GO Enrichment Analysis of Co-expressed Genes with
AT3G61870
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0046838: phosphorylated carbohydrate dephosphorylation | 0.00E+00 |
| 2 | GO:0035970: peptidyl-threonine dephosphorylation | 0.00E+00 |
| 3 | GO:0090042: tubulin deacetylation | 0.00E+00 |
| 4 | GO:0018023: peptidyl-lysine trimethylation | 0.00E+00 |
| 5 | GO:0009773: photosynthetic electron transport in photosystem I | 1.45E-07 |
| 6 | GO:0006546: glycine catabolic process | 2.51E-05 |
| 7 | GO:0071482: cellular response to light stimulus | 1.78E-04 |
| 8 | GO:0043266: regulation of potassium ion transport | 1.82E-04 |
| 9 | GO:0000481: maturation of 5S rRNA | 1.82E-04 |
| 10 | GO:0071461: cellular response to redox state | 1.82E-04 |
| 11 | GO:2000021: regulation of ion homeostasis | 1.82E-04 |
| 12 | GO:0034337: RNA folding | 1.82E-04 |
| 13 | GO:0010206: photosystem II repair | 2.17E-04 |
| 14 | GO:0015979: photosynthesis | 3.04E-04 |
| 15 | GO:0015995: chlorophyll biosynthetic process | 3.07E-04 |
| 16 | GO:0080005: photosystem stoichiometry adjustment | 4.10E-04 |
| 17 | GO:0018026: peptidyl-lysine monomethylation | 4.10E-04 |
| 18 | GO:0030388: fructose 1,6-bisphosphate metabolic process | 4.10E-04 |
| 19 | GO:0010270: photosystem II oxygen evolving complex assembly | 4.10E-04 |
| 20 | GO:0010275: NAD(P)H dehydrogenase complex assembly | 4.10E-04 |
| 21 | GO:0009767: photosynthetic electron transport chain | 4.63E-04 |
| 22 | GO:0010207: photosystem II assembly | 5.21E-04 |
| 23 | GO:0006518: peptide metabolic process | 6.69E-04 |
| 24 | GO:0006000: fructose metabolic process | 6.69E-04 |
| 25 | GO:0061077: chaperone-mediated protein folding | 8.65E-04 |
| 26 | GO:0043572: plastid fission | 9.55E-04 |
| 27 | GO:2001141: regulation of RNA biosynthetic process | 9.55E-04 |
| 28 | GO:0046836: glycolipid transport | 9.55E-04 |
| 29 | GO:0010258: NADH dehydrogenase complex (plastoquinone) assembly | 9.55E-04 |
| 30 | GO:0006020: inositol metabolic process | 9.55E-04 |
| 31 | GO:0009152: purine ribonucleotide biosynthetic process | 9.55E-04 |
| 32 | GO:0046653: tetrahydrofolate metabolic process | 9.55E-04 |
| 33 | GO:0006021: inositol biosynthetic process | 1.27E-03 |
| 34 | GO:0010021: amylopectin biosynthetic process | 1.27E-03 |
| 35 | GO:0019464: glycine decarboxylation via glycine cleavage system | 1.27E-03 |
| 36 | GO:0000413: protein peptidyl-prolyl isomerization | 1.29E-03 |
| 37 | GO:0019252: starch biosynthetic process | 1.60E-03 |
| 38 | GO:0010236: plastoquinone biosynthetic process | 1.61E-03 |
| 39 | GO:0016120: carotene biosynthetic process | 1.61E-03 |
| 40 | GO:0006655: phosphatidylglycerol biosynthetic process | 1.98E-03 |
| 41 | GO:0042549: photosystem II stabilization | 1.98E-03 |
| 42 | GO:0006828: manganese ion transport | 1.98E-03 |
| 43 | GO:0046855: inositol phosphate dephosphorylation | 1.98E-03 |
| 44 | GO:0032259: methylation | 2.22E-03 |
| 45 | GO:0006458: 'de novo' protein folding | 2.38E-03 |
| 46 | GO:0010189: vitamin E biosynthetic process | 2.38E-03 |
| 47 | GO:0042026: protein refolding | 2.38E-03 |
| 48 | GO:0006810: transport | 2.64E-03 |
| 49 | GO:0010196: nonphotochemical quenching | 2.80E-03 |
| 50 | GO:0009704: de-etiolation | 3.24E-03 |
| 51 | GO:0032508: DNA duplex unwinding | 3.24E-03 |
| 52 | GO:0005978: glycogen biosynthetic process | 3.24E-03 |
| 53 | GO:0006002: fructose 6-phosphate metabolic process | 3.71E-03 |
| 54 | GO:0006783: heme biosynthetic process | 4.20E-03 |
| 55 | GO:0010205: photoinhibition | 4.71E-03 |
| 56 | GO:0006779: porphyrin-containing compound biosynthetic process | 4.71E-03 |
| 57 | GO:0009658: chloroplast organization | 5.15E-03 |
| 58 | GO:0006782: protoporphyrinogen IX biosynthetic process | 5.24E-03 |
| 59 | GO:1903507: negative regulation of nucleic acid-templated transcription | 5.79E-03 |
| 60 | GO:0006352: DNA-templated transcription, initiation | 5.79E-03 |
| 61 | GO:0006816: calcium ion transport | 5.79E-03 |
| 62 | GO:0006790: sulfur compound metabolic process | 6.35E-03 |
| 63 | GO:0005983: starch catabolic process | 6.35E-03 |
| 64 | GO:0016024: CDP-diacylglycerol biosynthetic process | 6.35E-03 |
| 65 | GO:0010628: positive regulation of gene expression | 6.94E-03 |
| 66 | GO:0006094: gluconeogenesis | 6.94E-03 |
| 67 | GO:0005986: sucrose biosynthetic process | 6.94E-03 |
| 68 | GO:0010020: chloroplast fission | 7.55E-03 |
| 69 | GO:0019253: reductive pentose-phosphate cycle | 7.55E-03 |
| 70 | GO:0071732: cellular response to nitric oxide | 8.18E-03 |
| 71 | GO:0046854: phosphatidylinositol phosphorylation | 8.18E-03 |
| 72 | GO:0005985: sucrose metabolic process | 8.18E-03 |
| 73 | GO:0006636: unsaturated fatty acid biosynthetic process | 8.82E-03 |
| 74 | GO:0016575: histone deacetylation | 1.02E-02 |
| 75 | GO:2000022: regulation of jasmonic acid mediated signaling pathway | 1.16E-02 |
| 76 | GO:0071369: cellular response to ethylene stimulus | 1.23E-02 |
| 77 | GO:0008152: metabolic process | 1.26E-02 |
| 78 | GO:0016117: carotenoid biosynthetic process | 1.38E-02 |
| 79 | GO:0006633: fatty acid biosynthetic process | 1.58E-02 |
| 80 | GO:1901657: glycosyl compound metabolic process | 1.96E-02 |
| 81 | GO:0071281: cellular response to iron ion | 1.96E-02 |
| 82 | GO:0010027: thylakoid membrane organization | 2.32E-02 |
| 83 | GO:0009817: defense response to fungus, incompatible interaction | 2.81E-02 |
| 84 | GO:0055114: oxidation-reduction process | 2.97E-02 |
| 85 | GO:0005975: carbohydrate metabolic process | 3.05E-02 |
| 86 | GO:0007568: aging | 3.11E-02 |
| 87 | GO:0006508: proteolysis | 3.15E-02 |
| 88 | GO:0006457: protein folding | 3.17E-02 |
| 89 | GO:0009853: photorespiration | 3.32E-02 |
| 90 | GO:0006855: drug transmembrane transport | 4.44E-02 |
| 91 | GO:0031347: regulation of defense response | 4.56E-02 |
| 92 | GO:0006812: cation transport | 4.68E-02 |
| 93 | GO:0042538: hyperosmotic salinity response | 4.68E-02 |
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0102550: 2-methyl-6-geranylgeranyl-1,4-benzoquinol methyltransferase activity | 0.00E+00 |
| 2 | GO:0090471: 9,15,9'-tri-cis-zeta-carotene isomerase activity | 0.00E+00 |
| 3 | GO:0043014: alpha-tubulin binding | 0.00E+00 |
| 4 | GO:0102193: protein-ribulosamine 3-kinase activity | 0.00E+00 |
| 5 | GO:0046406: magnesium protoporphyrin IX methyltransferase activity | 0.00E+00 |
| 6 | GO:0051721: protein phosphatase 2A binding | 0.00E+00 |
| 7 | GO:0047538: 2-carboxy-D-arabinitol-1-phosphatase activity | 0.00E+00 |
| 8 | GO:0042903: tubulin deacetylase activity | 0.00E+00 |
| 9 | GO:0003755: peptidyl-prolyl cis-trans isomerase activity | 1.89E-07 |
| 10 | GO:0005528: FK506 binding | 8.17E-07 |
| 11 | GO:0004856: xylulokinase activity | 1.82E-04 |
| 12 | GO:0009496: plastoquinol--plastocyanin reductase activity | 1.82E-04 |
| 13 | GO:0046028: electron transporter, transferring electrons from cytochrome b6/f complex of photosystem II activity | 1.82E-04 |
| 14 | GO:0019203: carbohydrate phosphatase activity | 1.82E-04 |
| 15 | GO:0030785: [ribulose-bisphosphate carboxylase]-lysine N-methyltransferase activity | 1.82E-04 |
| 16 | GO:0051741: 2-methyl-6-phytyl-1,4-benzoquinone methyltransferase activity | 1.82E-04 |
| 17 | GO:0005227: calcium activated cation channel activity | 1.82E-04 |
| 18 | GO:0050308: sugar-phosphatase activity | 1.82E-04 |
| 19 | GO:0045485: omega-6 fatty acid desaturase activity | 1.82E-04 |
| 20 | GO:0004222: metalloendopeptidase activity | 4.00E-04 |
| 21 | GO:0019171: 3-hydroxyacyl-[acyl-carrier-protein] dehydratase activity | 4.10E-04 |
| 22 | GO:0008883: glutamyl-tRNA reductase activity | 4.10E-04 |
| 23 | GO:0004047: aminomethyltransferase activity | 4.10E-04 |
| 24 | GO:0052832: inositol monophosphate 3-phosphatase activity | 4.10E-04 |
| 25 | GO:0033201: alpha-1,4-glucan synthase activity | 4.10E-04 |
| 26 | GO:0042132: fructose 1,6-bisphosphate 1-phosphatase activity | 4.10E-04 |
| 27 | GO:0008934: inositol monophosphate 1-phosphatase activity | 4.10E-04 |
| 28 | GO:0052833: inositol monophosphate 4-phosphatase activity | 4.10E-04 |
| 29 | GO:0016787: hydrolase activity | 5.17E-04 |
| 30 | GO:0045158: electron transporter, transferring electrons within cytochrome b6/f complex of photosystem II activity | 6.69E-04 |
| 31 | GO:0030267: glyoxylate reductase (NADP) activity | 6.69E-04 |
| 32 | GO:0016742: hydroxymethyl-, formyl- and related transferase activity | 6.69E-04 |
| 33 | GO:0008864: formyltetrahydrofolate deformylase activity | 6.69E-04 |
| 34 | GO:0004373: glycogen (starch) synthase activity | 6.69E-04 |
| 35 | GO:0004176: ATP-dependent peptidase activity | 8.65E-04 |
| 36 | GO:0048487: beta-tubulin binding | 9.55E-04 |
| 37 | GO:0017089: glycolipid transporter activity | 9.55E-04 |
| 38 | GO:0004375: glycine dehydrogenase (decarboxylating) activity | 9.55E-04 |
| 39 | GO:0019201: nucleotide kinase activity | 9.55E-04 |
| 40 | GO:0016851: magnesium chelatase activity | 9.55E-04 |
| 41 | GO:0009011: starch synthase activity | 1.27E-03 |
| 42 | GO:0008878: glucose-1-phosphate adenylyltransferase activity | 1.27E-03 |
| 43 | GO:0016279: protein-lysine N-methyltransferase activity | 1.27E-03 |
| 44 | GO:0001053: plastid sigma factor activity | 1.27E-03 |
| 45 | GO:0016836: hydro-lyase activity | 1.27E-03 |
| 46 | GO:0051861: glycolipid binding | 1.27E-03 |
| 47 | GO:0016655: oxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor | 1.27E-03 |
| 48 | GO:0016987: sigma factor activity | 1.27E-03 |
| 49 | GO:0016773: phosphotransferase activity, alcohol group as acceptor | 1.61E-03 |
| 50 | GO:2001070: starch binding | 1.98E-03 |
| 51 | GO:0004366: glycerol-3-phosphate O-acyltransferase activity | 1.98E-03 |
| 52 | GO:0042578: phosphoric ester hydrolase activity | 1.98E-03 |
| 53 | GO:0016491: oxidoreductase activity | 2.12E-03 |
| 54 | GO:0008237: metallopeptidase activity | 2.19E-03 |
| 55 | GO:0004017: adenylate kinase activity | 2.38E-03 |
| 56 | GO:0004616: phosphogluconate dehydrogenase (decarboxylating) activity | 2.38E-03 |
| 57 | GO:0004723: calcium-dependent protein serine/threonine phosphatase activity | 2.38E-03 |
| 58 | GO:0045156: electron transporter, transferring electrons within the cyclic electron transport pathway of photosynthesis activity | 2.38E-03 |
| 59 | GO:0008441: 3'(2'),5'-bisphosphate nucleotidase activity | 2.38E-03 |
| 60 | GO:0008236: serine-type peptidase activity | 3.04E-03 |
| 61 | GO:0004033: aldo-keto reductase (NADP) activity | 3.24E-03 |
| 62 | GO:0032041: NAD-dependent histone deacetylase activity (H3-K14 specific) | 3.71E-03 |
| 63 | GO:0005509: calcium ion binding | 3.99E-03 |
| 64 | GO:0008138: protein tyrosine/serine/threonine phosphatase activity | 4.20E-03 |
| 65 | GO:0005384: manganese ion transmembrane transporter activity | 4.71E-03 |
| 66 | GO:0008168: methyltransferase activity | 4.91E-03 |
| 67 | GO:0044183: protein binding involved in protein folding | 5.79E-03 |
| 68 | GO:0047372: acylglycerol lipase activity | 5.79E-03 |
| 69 | GO:0004022: alcohol dehydrogenase (NAD) activity | 6.94E-03 |
| 70 | GO:0015095: magnesium ion transmembrane transporter activity | 6.94E-03 |
| 71 | GO:0004407: histone deacetylase activity | 9.48E-03 |
| 72 | GO:0003714: transcription corepressor activity | 9.48E-03 |
| 73 | GO:0043424: protein histidine kinase binding | 1.02E-02 |
| 74 | GO:0004252: serine-type endopeptidase activity | 1.39E-02 |
| 75 | GO:0048038: quinone binding | 1.79E-02 |
| 76 | GO:0008483: transaminase activity | 2.14E-02 |
| 77 | GO:0004721: phosphoprotein phosphatase activity | 2.61E-02 |
| 78 | GO:0102483: scopolin beta-glucosidase activity | 2.61E-02 |
| 79 | GO:0008757: S-adenosylmethionine-dependent methyltransferase activity | 2.71E-02 |
| 80 | GO:0015238: drug transmembrane transporter activity | 2.91E-02 |
| 81 | GO:0016614: oxidoreductase activity, acting on CH-OH group of donors | 3.11E-02 |
| 82 | GO:0008233: peptidase activity | 3.27E-02 |
| 83 | GO:0008422: beta-glucosidase activity | 3.54E-02 |
| 84 | GO:0050661: NADP binding | 3.65E-02 |
| 85 | GO:0051537: 2 iron, 2 sulfur cluster binding | 4.21E-02 |
| 86 | GO:0043621: protein self-association | 4.21E-02 |
| 87 | GO:0003899: DNA-directed 5'-3' RNA polymerase activity | 4.92E-02 |
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0009507: chloroplast | 7.02E-55 |
| 2 | GO:0009534: chloroplast thylakoid | 1.47E-26 |
| 3 | GO:0009535: chloroplast thylakoid membrane | 3.08E-21 |
| 4 | GO:0009941: chloroplast envelope | 7.89E-20 |
| 5 | GO:0009570: chloroplast stroma | 4.44E-18 |
| 6 | GO:0009543: chloroplast thylakoid lumen | 3.42E-17 |
| 7 | GO:0009579: thylakoid | 3.16E-11 |
| 8 | GO:0031977: thylakoid lumen | 5.27E-11 |
| 9 | GO:0031969: chloroplast membrane | 2.44E-06 |
| 10 | GO:0010598: NAD(P)H dehydrogenase complex (plastoquinone) | 4.68E-06 |
| 11 | GO:0009706: chloroplast inner membrane | 1.71E-05 |
| 12 | GO:0009654: photosystem II oxygen evolving complex | 4.33E-05 |
| 13 | GO:0019898: extrinsic component of membrane | 1.33E-04 |
| 14 | GO:0009344: nitrite reductase complex [NAD(P)H] | 1.82E-04 |
| 15 | GO:0030095: chloroplast photosystem II | 5.21E-04 |
| 16 | GO:0010007: magnesium chelatase complex | 6.69E-04 |
| 17 | GO:0005960: glycine cleavage complex | 9.55E-04 |
| 18 | GO:0009512: cytochrome b6f complex | 1.61E-03 |
| 19 | GO:0009533: chloroplast stromal thylakoid | 2.80E-03 |
| 20 | GO:0009501: amyloplast | 3.24E-03 |
| 21 | GO:0032040: small-subunit processome | 6.35E-03 |
| 22 | GO:0043234: protein complex | 8.82E-03 |
| 23 | GO:0010287: plastoglobule | 1.19E-02 |
| 24 | GO:0010319: stromule | 2.14E-02 |
| 25 | GO:0009536: plastid | 2.23E-02 |