co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT3G61630

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0010499: proteasomal ubiquitin-independent protein catabolic process	0.00E+00
2	GO:0043462: regulation of ATPase activity	0.00E+00
3	GO:0009991: response to extracellular stimulus	0.00E+00
4	GO:0008202: steroid metabolic process	5.35E-05
5	GO:0010265: SCF complex assembly	6.26E-05
6	GO:0046167: glycerol-3-phosphate biosynthetic process	6.26E-05
7	GO:0006805: xenobiotic metabolic process	6.26E-05
8	GO:0000303: response to superoxide	6.26E-05
9	GO:0034214: protein hexamerization	6.26E-05
10	GO:0009867: jasmonic acid mediated signaling pathway	6.42E-05
11	GO:1902000: homogentisate catabolic process	1.52E-04
12	GO:0031648: protein destabilization	1.52E-04
13	GO:0071395: cellular response to jasmonic acid stimulus	1.52E-04
14	GO:0006641: triglyceride metabolic process	1.52E-04
15	GO:0019374: galactolipid metabolic process	1.52E-04
16	GO:0051603: proteolysis involved in cellular protein catabolic process	1.52E-04
17	GO:0031348: negative regulation of defense response	2.29E-04
18	GO:0019563: glycerol catabolic process	2.57E-04
19	GO:0045039: protein import into mitochondrial inner membrane	2.57E-04
20	GO:0009072: aromatic amino acid family metabolic process	2.57E-04
21	GO:0006556: S-adenosylmethionine biosynthetic process	2.57E-04
22	GO:0009845: seed germination	3.54E-04
23	GO:0070676: intralumenal vesicle formation	3.73E-04
24	GO:0006072: glycerol-3-phosphate metabolic process	3.73E-04
25	GO:0006809: nitric oxide biosynthetic process	3.73E-04
26	GO:0009399: nitrogen fixation	3.73E-04
27	GO:0010188: response to microbial phytotoxin	4.99E-04
28	GO:0006542: glutamine biosynthetic process	4.99E-04
29	GO:0010363: regulation of plant-type hypersensitive response	4.99E-04
30	GO:0046686: response to cadmium ion	7.67E-04
31	GO:0045899: positive regulation of RNA polymerase II transcriptional preinitiation complex assembly	7.73E-04
32	GO:0006751: glutathione catabolic process	7.73E-04
33	GO:0070814: hydrogen sulfide biosynthetic process	7.73E-04
34	GO:0010358: leaf shaping	7.73E-04
35	GO:0010043: response to zinc ion	9.06E-04
36	GO:0000911: cytokinesis by cell plate formation	9.20E-04
37	GO:0009723: response to ethylene	9.97E-04
38	GO:0015937: coenzyme A biosynthetic process	1.07E-03
39	GO:0006955: immune response	1.07E-03
40	GO:0046470: phosphatidylcholine metabolic process	1.07E-03
41	GO:0071446: cellular response to salicylic acid stimulus	1.07E-03
42	GO:0006631: fatty acid metabolic process	1.16E-03
43	GO:0016559: peroxisome fission	1.24E-03
44	GO:0006644: phospholipid metabolic process	1.24E-03
45	GO:0051707: response to other organism	1.26E-03
46	GO:0030968: endoplasmic reticulum unfolded protein response	1.41E-03
47	GO:0007338: single fertilization	1.58E-03
48	GO:0016042: lipid catabolic process	1.70E-03
49	GO:2000280: regulation of root development	1.77E-03
50	GO:0000103: sulfate assimilation	1.96E-03
51	GO:0019538: protein metabolic process	1.96E-03
52	GO:0010072: primary shoot apical meristem specification	2.17E-03
53	GO:0072593: reactive oxygen species metabolic process	2.17E-03
54	GO:0000266: mitochondrial fission	2.37E-03
55	GO:0012501: programmed cell death	2.37E-03
56	GO:0009873: ethylene-activated signaling pathway	2.43E-03
57	GO:0010102: lateral root morphogenesis	2.58E-03
58	GO:0007034: vacuolar transport	2.80E-03
59	GO:0009887: animal organ morphogenesis	2.80E-03
60	GO:0002237: response to molecule of bacterial origin	2.80E-03
61	GO:0010053: root epidermal cell differentiation	3.03E-03
62	GO:0009825: multidimensional cell growth	3.03E-03
63	GO:2000377: regulation of reactive oxygen species metabolic process	3.49E-03
64	GO:0030150: protein import into mitochondrial matrix	3.49E-03
65	GO:0006468: protein phosphorylation	3.79E-03
66	GO:0040008: regulation of growth	3.88E-03
67	GO:0030433: ubiquitin-dependent ERAD pathway	4.24E-03
68	GO:0007005: mitochondrion organization	4.24E-03
69	GO:0006730: one-carbon metabolic process	4.24E-03
70	GO:0009693: ethylene biosynthetic process	4.50E-03
71	GO:0006470: protein dephosphorylation	4.64E-03
72	GO:0009617: response to bacterium	4.84E-03
73	GO:0009789: positive regulation of abscisic acid-activated signaling pathway	5.03E-03
74	GO:0010087: phloem or xylem histogenesis	5.31E-03
75	GO:0006511: ubiquitin-dependent protein catabolic process	5.35E-03
76	GO:0010154: fruit development	5.59E-03
77	GO:0042752: regulation of circadian rhythm	5.88E-03
78	GO:0010193: response to ozone	6.46E-03
79	GO:0010583: response to cyclopentenone	6.76E-03
80	GO:0016032: viral process	6.76E-03
81	GO:0007049: cell cycle	7.00E-03
82	GO:0071281: cellular response to iron ion	7.07E-03
83	GO:0006464: cellular protein modification process	7.38E-03
84	GO:0009567: double fertilization forming a zygote and endosperm	7.38E-03
85	GO:0016192: vesicle-mediated transport	8.18E-03
86	GO:0046777: protein autophosphorylation	8.31E-03
87	GO:0009911: positive regulation of flower development	8.35E-03
88	GO:0009788: negative regulation of abscisic acid-activated signaling pathway	8.68E-03
89	GO:0009816: defense response to bacterium, incompatible interaction	8.68E-03
90	GO:0006979: response to oxidative stress	8.97E-03
91	GO:0042128: nitrate assimilation	9.01E-03
92	GO:0048573: photoperiodism, flowering	9.36E-03
93	GO:0006950: response to stress	9.36E-03
94	GO:0045892: negative regulation of transcription, DNA-templated	9.46E-03
95	GO:0009817: defense response to fungus, incompatible interaction	1.01E-02
96	GO:0006869: lipid transport	1.02E-02
97	GO:0009407: toxin catabolic process	1.08E-02
98	GO:0048527: lateral root development	1.11E-02
99	GO:0010119: regulation of stomatal movement	1.11E-02
100	GO:0007568: aging	1.11E-02
101	GO:0009651: response to salt stress	1.13E-02
102	GO:0009408: response to heat	1.15E-02
103	GO:0015031: protein transport	1.21E-02
104	GO:0008152: metabolic process	1.27E-02
105	GO:0009636: response to toxic substance	1.54E-02
106	GO:0009734: auxin-activated signaling pathway	1.62E-02
107	GO:0042787: protein ubiquitination involved in ubiquitin-dependent protein catabolic process	1.63E-02
108	GO:0009846: pollen germination	1.67E-02
109	GO:0009738: abscisic acid-activated signaling pathway	1.98E-02
110	GO:0035556: intracellular signal transduction	2.16E-02
111	GO:0016310: phosphorylation	2.76E-02
112	GO:0009790: embryo development	2.95E-02
113	GO:0006633: fatty acid biosynthetic process	3.11E-02
114	GO:0050832: defense response to fungus	3.50E-02
115	GO:0007166: cell surface receptor signaling pathway	3.66E-02
116	GO:0010468: regulation of gene expression	3.77E-02
117	GO:0009733: response to auxin	4.63E-02
118	GO:0006970: response to osmotic stress	4.78E-02
119	GO:0009860: pollen tube growth	4.78E-02

Rank	GO Term	Adjusted P value
1	GO:0004370: glycerol kinase activity	0.00E+00
2	GO:0016504: peptidase activator activity	0.00E+00
3	GO:0016034: maleylacetoacetate isomerase activity	0.00E+00
4	GO:0070577: lysine-acetylated histone binding	0.00E+00
5	GO:0033550: MAP kinase tyrosine phosphatase activity	0.00E+00
6	GO:0005524: ATP binding	6.61E-07
7	GO:0004620: phospholipase activity	2.06E-05
8	GO:0008142: oxysterol binding	3.49E-05
9	GO:0004713: protein tyrosine kinase activity	6.42E-05
10	GO:0019200: carbohydrate kinase activity	1.52E-04
11	GO:0004594: pantothenate kinase activity	1.52E-04
12	GO:0032934: sterol binding	1.52E-04
13	GO:0004298: threonine-type endopeptidase activity	2.08E-04
14	GO:0003840: gamma-glutamyltransferase activity	2.57E-04
15	GO:0036374: glutathione hydrolase activity	2.57E-04
16	GO:0004781: sulfate adenylyltransferase (ATP) activity	2.57E-04
17	GO:0004478: methionine adenosyltransferase activity	2.57E-04
18	GO:0016756: glutathione gamma-glutamylcysteinyltransferase activity	3.73E-04
19	GO:0070628: proteasome binding	4.99E-04
20	GO:0016887: ATPase activity	5.08E-04
21	GO:0004356: glutamate-ammonia ligase activity	6.32E-04
22	GO:0005546: phosphatidylinositol-4,5-bisphosphate binding	6.32E-04
23	GO:0047714: galactolipase activity	7.73E-04
24	GO:0036402: proteasome-activating ATPase activity	7.73E-04
25	GO:0008113: peptide-methionine (S)-S-oxide reductase activity	9.20E-04
26	GO:0102391: decanoate--CoA ligase activity	9.20E-04
27	GO:0003950: NAD+ ADP-ribosyltransferase activity	9.20E-04
28	GO:0004467: long-chain fatty acid-CoA ligase activity	1.07E-03
29	GO:0004712: protein serine/threonine/tyrosine kinase activity	1.07E-03
30	GO:0102425: myricetin 3-O-glucosyltransferase activity	1.07E-03
31	GO:0102360: daphnetin 3-O-glucosyltransferase activity	1.07E-03
32	GO:0047893: flavonol 3-O-glucosyltransferase activity	1.24E-03
33	GO:0005515: protein binding	1.38E-03
34	GO:0004630: phospholipase D activity	1.41E-03
35	GO:0008970: phosphatidylcholine 1-acylhydrolase activity	1.41E-03
36	GO:0070290: N-acylphosphatidylethanolamine-specific phospholipase D activity	1.41E-03
37	GO:0045309: protein phosphorylated amino acid binding	1.77E-03
38	GO:0047617: acyl-CoA hydrolase activity	1.77E-03
39	GO:0019904: protein domain specific binding	2.17E-03
40	GO:0008794: arsenate reductase (glutaredoxin) activity	2.17E-03
41	GO:0031072: heat shock protein binding	2.58E-03
42	GO:0015266: protein channel activity	2.58E-03
43	GO:0017025: TBP-class protein binding	3.03E-03
44	GO:0004672: protein kinase activity	3.22E-03
45	GO:0004725: protein tyrosine phosphatase activity	3.26E-03
46	GO:0035251: UDP-glucosyltransferase activity	3.98E-03
47	GO:0008194: UDP-glycosyltransferase activity	4.54E-03
48	GO:0030276: clathrin binding	5.59E-03
49	GO:0001085: RNA polymerase II transcription factor binding	5.59E-03
50	GO:0004674: protein serine/threonine kinase activity	5.71E-03
51	GO:0004197: cysteine-type endopeptidase activity	6.76E-03
52	GO:0008233: peptidase activity	7.64E-03
53	GO:0004806: triglyceride lipase activity	9.36E-03
54	GO:0004871: signal transducer activity	9.75E-03
55	GO:0015450: P-P-bond-hydrolysis-driven protein transmembrane transporter activity	1.01E-02
56	GO:0004722: protein serine/threonine phosphatase activity	1.02E-02
57	GO:0005096: GTPase activator activity	1.04E-02
58	GO:0001228: transcriptional activator activity, RNA polymerase II transcription regulatory region sequence-specific binding	1.11E-02
59	GO:0004364: glutathione transferase activity	1.38E-02
60	GO:0008234: cysteine-type peptidase activity	1.89E-02
61	GO:0031625: ubiquitin protein ligase binding	1.89E-02
62	GO:0080043: quercetin 3-O-glucosyltransferase activity	2.11E-02
63	GO:0080044: quercetin 7-O-glucosyltransferase activity	2.11E-02
64	GO:0051082: unfolded protein binding	2.25E-02
65	GO:0015035: protein disulfide oxidoreductase activity	2.30E-02
66	GO:0016787: hydrolase activity	2.33E-02
67	GO:0016758: transferase activity, transferring hexosyl groups	2.60E-02
68	GO:0000977: RNA polymerase II regulatory region sequence-specific DNA binding	2.90E-02
69	GO:0015144: carbohydrate transmembrane transporter activity	3.01E-02
70	GO:0008565: protein transporter activity	3.01E-02
71	GO:0005351: sugar:proton symporter activity	3.27E-02
72	GO:0042802: identical protein binding	3.95E-02
73	GO:0004601: peroxidase activity	4.54E-02
74	GO:0003682: chromatin binding	4.72E-02

Rank	GO Term	Adjusted P value
1	GO:0005839: proteasome core complex	4.68E-06
2	GO:0005829: cytosol	8.35E-06
3	GO:0005886: plasma membrane	4.59E-05
4	GO:0000502: proteasome complex	1.45E-04
5	GO:0005741: mitochondrial outer membrane	2.08E-04
6	GO:0030136: clathrin-coated vesicle	2.97E-04
7	GO:0031461: cullin-RING ubiquitin ligase complex	3.73E-04
8	GO:0000164: protein phosphatase type 1 complex	6.32E-04
9	GO:0005771: multivesicular body	7.73E-04
10	GO:0031597: cytosolic proteasome complex	9.20E-04
11	GO:0000815: ESCRT III complex	9.20E-04
12	GO:0016363: nuclear matrix	9.20E-04
13	GO:0000794: condensed nuclear chromosome	1.07E-03
14	GO:0031595: nuclear proteasome complex	1.07E-03
15	GO:0005819: spindle	1.07E-03
16	GO:0031305: integral component of mitochondrial inner membrane	1.24E-03
17	GO:0030131: clathrin adaptor complex	1.24E-03
18	GO:0030665: clathrin-coated vesicle membrane	1.77E-03
19	GO:0008540: proteasome regulatory particle, base subcomplex	1.77E-03
20	GO:0005635: nuclear envelope	1.79E-03
21	GO:0016602: CCAAT-binding factor complex	2.58E-03
22	GO:0005764: lysosome	2.80E-03
23	GO:0009524: phragmoplast	3.11E-03
24	GO:0005744: mitochondrial inner membrane presequence translocase complex	4.76E-03
25	GO:0005770: late endosome	5.59E-03
26	GO:0005778: peroxisomal membrane	7.70E-03
27	GO:0005667: transcription factor complex	9.01E-03
28	GO:0005737: cytoplasm	9.47E-03
29	GO:0000151: ubiquitin ligase complex	1.01E-02
30	GO:0005618: cell wall	1.45E-02
31	GO:0031966: mitochondrial membrane	1.67E-02
32	GO:0010008: endosome membrane	2.02E-02
33	GO:0005834: heterotrimeric G-protein complex	2.07E-02
34	GO:0005773: vacuole	2.24E-02
35	GO:0005777: peroxisome	2.35E-02
36	GO:0005783: endoplasmic reticulum	3.35E-02
37	GO:0005615: extracellular space	3.60E-02
38	GO:0005774: vacuolar membrane	4.23E-02
39	GO:0005634: nucleus	4.32E-02
40	GO:0080008: Cul4-RING E3 ubiquitin ligase complex	4.84E-02