Gene type: Transcription factor Metabolic gene Others DE type: Up Down Slightly_up Slightly_down Mixeded Others

GO Enrichment Analysis of Co-expressed Genes with

AT3G61130

GO-BP
GO-MF
GO-CC
RankGO TermAdjusted P value
1GO:0070681: glutaminyl-tRNAGln biosynthesis via transamidation0.00E+00
2GO:0033494: ferulate metabolic process0.00E+00
3GO:0046838: phosphorylated carbohydrate dephosphorylation0.00E+00
4GO:0001778: plasma membrane repair0.00E+00
5GO:0006642: triglyceride mobilization0.00E+00
6GO:2000042: negative regulation of double-strand break repair via homologous recombination0.00E+00
7GO:0099131: ATP hydrolysis coupled ion transmembrane transport0.00E+00
8GO:0007638: mechanosensory behavior0.00E+00
9GO:0035970: peptidyl-threonine dephosphorylation0.00E+00
10GO:0090042: tubulin deacetylation0.00E+00
11GO:0009913: epidermal cell differentiation1.70E-04
12GO:0016998: cell wall macromolecule catabolic process1.98E-04
13GO:0043007: maintenance of rDNA3.47E-04
14GO:0034337: RNA folding3.47E-04
15GO:0071596: ubiquitin-dependent protein catabolic process via the N-end rule pathway3.47E-04
16GO:0060627: regulation of vesicle-mediated transport3.47E-04
17GO:0015808: L-alanine transport3.47E-04
18GO:0043266: regulation of potassium ion transport3.47E-04
19GO:0010480: microsporocyte differentiation3.47E-04
20GO:0006824: cobalt ion transport3.47E-04
21GO:0000481: maturation of 5S rRNA3.47E-04
22GO:0046166: glyceraldehyde-3-phosphate biosynthetic process3.47E-04
23GO:0080051: cutin transport3.47E-04
24GO:0071461: cellular response to redox state3.47E-04
25GO:2000021: regulation of ion homeostasis3.47E-04
26GO:0008610: lipid biosynthetic process3.76E-04
27GO:0071482: cellular response to light stimulus4.61E-04
28GO:0010270: photosystem II oxygen evolving complex assembly7.56E-04
29GO:0015804: neutral amino acid transport7.56E-04
30GO:0010275: NAD(P)H dehydrogenase complex assembly7.56E-04
31GO:0010198: synergid death7.56E-04
32GO:0080005: photosystem stoichiometry adjustment7.56E-04
33GO:0010115: regulation of abscisic acid biosynthetic process7.56E-04
34GO:0015908: fatty acid transport7.56E-04
35GO:0045717: negative regulation of fatty acid biosynthetic process7.56E-04
36GO:0010541: acropetal auxin transport7.56E-04
37GO:0034755: iron ion transmembrane transport7.56E-04
38GO:0098712: L-glutamate import across plasma membrane7.56E-04
39GO:0046740: transport of virus in host, cell to cell7.56E-04
40GO:0006816: calcium ion transport8.76E-04
41GO:0015995: chlorophyll biosynthetic process1.00E-03
42GO:0032504: multicellular organism reproduction1.22E-03
43GO:0019563: glycerol catabolic process1.22E-03
44GO:0006518: peptide metabolic process1.22E-03
45GO:0010160: formation of animal organ boundary1.22E-03
46GO:0010020: chloroplast fission1.27E-03
47GO:0007169: transmembrane receptor protein tyrosine kinase signaling pathway1.36E-03
48GO:0010258: NADH dehydrogenase complex (plastoquinone) assembly1.76E-03
49GO:0007231: osmosensory signaling pathway1.76E-03
50GO:0051639: actin filament network formation1.76E-03
51GO:0009152: purine ribonucleotide biosynthetic process1.76E-03
52GO:0032456: endocytic recycling1.76E-03
53GO:0046653: tetrahydrofolate metabolic process1.76E-03
54GO:0009052: pentose-phosphate shunt, non-oxidative branch1.76E-03
55GO:0043481: anthocyanin accumulation in tissues in response to UV light1.76E-03
56GO:0006612: protein targeting to membrane1.76E-03
57GO:0006424: glutamyl-tRNA aminoacylation1.76E-03
58GO:0043572: plastid fission1.76E-03
59GO:0016556: mRNA modification1.76E-03
60GO:0055070: copper ion homeostasis1.76E-03
61GO:2001141: regulation of RNA biosynthetic process1.76E-03
62GO:0010222: stem vascular tissue pattern formation2.37E-03
63GO:0051764: actin crosslink formation2.37E-03
64GO:0006183: GTP biosynthetic process2.37E-03
65GO:0033500: carbohydrate homeostasis2.37E-03
66GO:0031122: cytoplasmic microtubule organization2.37E-03
67GO:0019287: isopentenyl diphosphate biosynthetic process, mevalonate pathway2.37E-03
68GO:0010021: amylopectin biosynthetic process2.37E-03
69GO:0009831: plant-type cell wall modification involved in multidimensional cell growth2.54E-03
70GO:0009664: plant-type cell wall organization2.83E-03
71GO:0035434: copper ion transmembrane transport3.03E-03
72GO:0010438: cellular response to sulfur starvation3.03E-03
73GO:0000304: response to singlet oxygen3.03E-03
74GO:0032543: mitochondrial translation3.03E-03
75GO:0016120: carotene biosynthetic process3.03E-03
76GO:0048497: maintenance of floral organ identity3.03E-03
77GO:0000413: protein peptidyl-prolyl isomerization3.24E-03
78GO:0010182: sugar mediated signaling pathway3.49E-03
79GO:0010405: arabinogalactan protein metabolic process3.74E-03
80GO:0006751: glutathione catabolic process3.74E-03
81GO:0006655: phosphatidylglycerol biosynthetic process3.74E-03
82GO:0060918: auxin transport3.74E-03
83GO:0010190: cytochrome b6f complex assembly3.74E-03
84GO:0006828: manganese ion transport3.74E-03
85GO:0018258: protein O-linked glycosylation via hydroxyproline3.74E-03
86GO:0009759: indole glucosinolate biosynthetic process3.74E-03
87GO:0006561: proline biosynthetic process3.74E-03
88GO:0009612: response to mechanical stimulus4.50E-03
89GO:2000033: regulation of seed dormancy process4.50E-03
90GO:0009624: response to nematode4.86E-03
91GO:0009828: plant-type cell wall loosening5.22E-03
92GO:0006955: immune response5.32E-03
93GO:0043090: amino acid import5.32E-03
94GO:0048437: floral organ development5.32E-03
95GO:0016559: peroxisome fission6.17E-03
96GO:0048564: photosystem I assembly6.17E-03
97GO:0045292: mRNA cis splicing, via spliceosome6.17E-03
98GO:0032508: DNA duplex unwinding6.17E-03
99GO:0032544: plastid translation7.08E-03
100GO:0010411: xyloglucan metabolic process7.35E-03
101GO:0000373: Group II intron splicing8.04E-03
102GO:0006633: fatty acid biosynthetic process8.67E-03
103GO:0016042: lipid catabolic process9.47E-03
104GO:0006468: protein phosphorylation9.59E-03
105GO:0006949: syncytium formation1.01E-02
106GO:0010162: seed dormancy process1.01E-02
107GO:0006535: cysteine biosynthetic process from serine1.01E-02
108GO:0019538: protein metabolic process1.01E-02
109GO:0009688: abscisic acid biosynthetic process1.01E-02
110GO:0043069: negative regulation of programmed cell death1.01E-02
111GO:0016051: carbohydrate biosynthetic process1.03E-02
112GO:0046856: phosphatidylinositol dephosphorylation1.12E-02
113GO:0000038: very long-chain fatty acid metabolic process1.12E-02
114GO:0043085: positive regulation of catalytic activity1.12E-02
115GO:1903507: negative regulation of nucleic acid-templated transcription1.12E-02
116GO:0006352: DNA-templated transcription, initiation1.12E-02
117GO:0009750: response to fructose1.12E-02
118GO:0048229: gametophyte development1.12E-02
119GO:0030001: metal ion transport1.18E-02
120GO:0008361: regulation of cell size1.23E-02
121GO:0006820: anion transport1.23E-02
122GO:0005983: starch catabolic process1.23E-02
123GO:0002213: defense response to insect1.23E-02
124GO:0016024: CDP-diacylglycerol biosynthetic process1.23E-02
125GO:0009718: anthocyanin-containing compound biosynthetic process1.34E-02
126GO:0010075: regulation of meristem growth1.34E-02
127GO:0006094: gluconeogenesis1.34E-02
128GO:0009767: photosynthetic electron transport chain1.34E-02
129GO:0010588: cotyledon vascular tissue pattern formation1.34E-02
130GO:0030048: actin filament-based movement1.34E-02
131GO:0010102: lateral root morphogenesis1.34E-02
132GO:0042546: cell wall biogenesis1.39E-02
133GO:0010540: basipetal auxin transport1.46E-02
134GO:0009934: regulation of meristem structural organization1.46E-02
135GO:0010143: cutin biosynthetic process1.46E-02
136GO:0019253: reductive pentose-phosphate cycle1.46E-02
137GO:0070588: calcium ion transmembrane transport1.59E-02
138GO:0009826: unidimensional cell growth1.62E-02
139GO:0042538: hyperosmotic salinity response1.68E-02
140GO:0000162: tryptophan biosynthetic process1.71E-02
141GO:0019344: cysteine biosynthetic process1.85E-02
142GO:0051017: actin filament bundle assembly1.85E-02
143GO:0006857: oligopeptide transport1.93E-02
144GO:0016575: histone deacetylation1.98E-02
145GO:0031408: oxylipin biosynthetic process2.12E-02
146GO:0006096: glycolytic process2.14E-02
147GO:2000022: regulation of jasmonic acid mediated signaling pathway2.26E-02
148GO:0035428: hexose transmembrane transport2.26E-02
149GO:0006730: one-carbon metabolic process2.26E-02
150GO:0071555: cell wall organization2.35E-02
151GO:0048443: stamen development2.55E-02
152GO:0015979: photosynthesis2.64E-02
153GO:0016117: carotenoid biosynthetic process2.70E-02
154GO:0009789: positive regulation of abscisic acid-activated signaling pathway2.70E-02
155GO:0045454: cell redox homeostasis2.80E-02
156GO:0048653: anther development2.85E-02
157GO:0000271: polysaccharide biosynthetic process2.85E-02
158GO:0080022: primary root development2.85E-02
159GO:0042335: cuticle development2.85E-02
160GO:0046323: glucose import3.01E-02
161GO:0009958: positive gravitropism3.01E-02
162GO:0045489: pectin biosynthetic process3.01E-02
163GO:0006662: glycerol ether metabolic process3.01E-02
164GO:0048825: cotyledon development3.33E-02
165GO:0019252: starch biosynthetic process3.33E-02
166GO:0071554: cell wall organization or biogenesis3.50E-02
167GO:0007264: small GTPase mediated signal transduction3.67E-02
168GO:0016032: viral process3.67E-02
169GO:1901657: glycosyl compound metabolic process3.84E-02
170GO:0009753: response to jasmonic acid3.96E-02
171GO:0009639: response to red or far red light4.01E-02
172GO:0008152: metabolic process4.10E-02
173GO:0016126: sterol biosynthetic process4.55E-02
174GO:0010027: thylakoid membrane organization4.55E-02
175GO:0009615: response to virus4.55E-02
176GO:0042128: nitrate assimilation4.91E-02
177GO:0009739: response to gibberellin4.95E-02
RankGO TermAdjusted P value
1GO:0019146: arabinose-5-phosphate isomerase activity0.00E+00
2GO:0047513: 1,2-alpha-L-fucosidase activity0.00E+00
3GO:0010301: xanthoxin dehydrogenase activity0.00E+00
4GO:0090471: 9,15,9'-tri-cis-zeta-carotene isomerase activity0.00E+00
5GO:0043014: alpha-tubulin binding0.00E+00
6GO:0051721: protein phosphatase 2A binding0.00E+00
7GO:0042903: tubulin deacetylase activity0.00E+00
8GO:0016788: hydrolase activity, acting on ester bonds1.83E-04
9GO:0047381: dodecanoyl-[acyl-carrier-protein] hydrolase activity3.47E-04
10GO:0004801: sedoheptulose-7-phosphate:D-glyceraldehyde-3-phosphate glyceronetransferase activity3.47E-04
11GO:0005227: calcium activated cation channel activity3.47E-04
12GO:0015194: L-serine transmembrane transporter activity3.47E-04
13GO:0004807: triose-phosphate isomerase activity3.47E-04
14GO:0050567: glutaminyl-tRNA synthase (glutamine-hydrolyzing) activity3.47E-04
15GO:0042834: peptidoglycan binding3.47E-04
16GO:0080132: fatty acid alpha-hydroxylase activity3.47E-04
17GO:0008568: microtubule-severing ATPase activity3.47E-04
18GO:0050308: sugar-phosphatase activity3.47E-04
19GO:0019203: carbohydrate phosphatase activity3.47E-04
20GO:0033946: xyloglucan-specific endo-beta-1,4-glucanase activity3.47E-04
21GO:0004163: diphosphomevalonate decarboxylase activity3.47E-04
22GO:0015245: fatty acid transporter activity3.47E-04
23GO:0004328: formamidase activity3.47E-04
24GO:0003755: peptidyl-prolyl cis-trans isomerase activity4.12E-04
25GO:0003839: gamma-glutamylcyclotransferase activity7.56E-04
26GO:0003938: IMP dehydrogenase activity7.56E-04
27GO:0033201: alpha-1,4-glucan synthase activity7.56E-04
28GO:0019171: 3-hydroxyacyl-[acyl-carrier-protein] dehydratase activity7.56E-04
29GO:0015180: L-alanine transmembrane transporter activity7.56E-04
30GO:1901981: phosphatidylinositol phosphate binding7.56E-04
31GO:0050017: L-3-cyanoalanine synthase activity7.56E-04
32GO:0008864: formyltetrahydrofolate deformylase activity1.22E-03
33GO:0016296: palmitoyl-[acyl-carrier-protein] hydrolase activity1.22E-03
34GO:0016295: myristoyl-[acyl-carrier-protein] hydrolase activity1.22E-03
35GO:0016531: copper chaperone activity1.22E-03
36GO:0004373: glycogen (starch) synthase activity1.22E-03
37GO:0019829: cation-transporting ATPase activity1.22E-03
38GO:0050734: hydroxycinnamoyltransferase activity1.22E-03
39GO:0003913: DNA photolyase activity1.22E-03
40GO:0015193: L-proline transmembrane transporter activity1.22E-03
41GO:0004751: ribose-5-phosphate isomerase activity1.22E-03
42GO:0030267: glyoxylate reductase (NADP) activity1.22E-03
43GO:0016742: hydroxymethyl-, formyl- and related transferase activity1.22E-03
44GO:0052689: carboxylic ester hydrolase activity1.53E-03
45GO:0001872: (1->3)-beta-D-glucan binding1.76E-03
46GO:0015186: L-glutamine transmembrane transporter activity1.76E-03
47GO:0004742: dihydrolipoyllysine-residue acetyltransferase activity1.76E-03
48GO:0015175: neutral amino acid transmembrane transporter activity1.76E-03
49GO:0005528: FK506 binding1.76E-03
50GO:0048487: beta-tubulin binding1.76E-03
51GO:0004445: inositol-polyphosphate 5-phosphatase activity1.76E-03
52GO:0016811: hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in linear amides1.76E-03
53GO:0016851: magnesium chelatase activity1.76E-03
54GO:0001053: plastid sigma factor activity2.37E-03
55GO:0016836: hydro-lyase activity2.37E-03
56GO:0016655: oxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor2.37E-03
57GO:0016987: sigma factor activity2.37E-03
58GO:0009011: starch synthase activity2.37E-03
59GO:0005313: L-glutamate transmembrane transporter activity2.37E-03
60GO:0052793: pectin acetylesterase activity2.37E-03
61GO:0008381: mechanically-gated ion channel activity3.03E-03
62GO:2001070: starch binding3.74E-03
63GO:0080030: methyl indole-3-acetate esterase activity3.74E-03
64GO:1990714: hydroxyproline O-galactosyltransferase activity3.74E-03
65GO:0034485: phosphatidylinositol-3,4,5-trisphosphate 5-phosphatase activity3.74E-03
66GO:0035673: oligopeptide transmembrane transporter activity3.74E-03
67GO:0004366: glycerol-3-phosphate O-acyltransferase activity3.74E-03
68GO:0008200: ion channel inhibitor activity3.74E-03
69GO:0016762: xyloglucan:xyloglucosyl transferase activity4.31E-03
70GO:0004124: cysteine synthase activity4.50E-03
71GO:0051920: peroxiredoxin activity4.50E-03
72GO:0051753: mannan synthase activity4.50E-03
73GO:0004616: phosphogluconate dehydrogenase (decarboxylating) activity4.50E-03
74GO:0004723: calcium-dependent protein serine/threonine phosphatase activity4.50E-03
75GO:0016787: hydrolase activity5.00E-03
76GO:0009881: photoreceptor activity5.32E-03
77GO:0043295: glutathione binding5.32E-03
78GO:0016209: antioxidant activity6.17E-03
79GO:0004033: aldo-keto reductase (NADP) activity6.17E-03
80GO:0016758: transferase activity, transferring hexosyl groups6.26E-03
81GO:0032041: NAD-dependent histone deacetylase activity (H3-K14 specific)7.08E-03
82GO:0005375: copper ion transmembrane transporter activity7.08E-03
83GO:0016798: hydrolase activity, acting on glycosyl bonds7.35E-03
84GO:0004721: phosphoprotein phosphatase activity7.35E-03
85GO:0008138: protein tyrosine/serine/threonine phosphatase activity8.04E-03
86GO:0004222: metalloendopeptidase activity8.99E-03
87GO:0005381: iron ion transmembrane transporter activity9.03E-03
88GO:0005384: manganese ion transmembrane transporter activity9.03E-03
89GO:0047617: acyl-CoA hydrolase activity9.03E-03
90GO:0008047: enzyme activator activity1.01E-02
91GO:0015020: glucuronosyltransferase activity1.01E-02
92GO:0047372: acylglycerol lipase activity1.12E-02
93GO:0008378: galactosyltransferase activity1.23E-02
94GO:0004439: phosphatidylinositol-4,5-bisphosphate 5-phosphatase activity1.23E-02
95GO:0015198: oligopeptide transporter activity1.23E-02
96GO:0005524: ATP binding1.26E-02
97GO:0042626: ATPase activity, coupled to transmembrane movement of substances1.33E-02
98GO:0004089: carbonate dehydratase activity1.34E-02
99GO:0015095: magnesium ion transmembrane transporter activity1.34E-02
100GO:0005262: calcium channel activity1.34E-02
101GO:0004565: beta-galactosidase activity1.34E-02
102GO:0004022: alcohol dehydrogenase (NAD) activity1.34E-02
103GO:0010329: auxin efflux transmembrane transporter activity1.34E-02
104GO:0015662: ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism1.34E-02
105GO:0005516: calmodulin binding1.42E-02
106GO:0003774: motor activity1.46E-02
107GO:0015293: symporter activity1.50E-02
108GO:0008289: lipid binding1.63E-02
109GO:0102336: 3-oxo-arachidoyl-CoA synthase activity1.71E-02
110GO:0102337: 3-oxo-cerotoyl-CoA synthase activity1.71E-02
111GO:0102338: 3-oxo-lignoceronyl-CoA synthase activity1.71E-02
112GO:0004407: histone deacetylase activity1.85E-02
113GO:0003714: transcription corepressor activity1.85E-02
114GO:0043424: protein histidine kinase binding1.98E-02
115GO:0008324: cation transmembrane transporter activity1.98E-02
116GO:0019706: protein-cysteine S-palmitoyltransferase activity2.12E-02
117GO:0004707: MAP kinase activity2.12E-02
118GO:0004176: ATP-dependent peptidase activity2.12E-02
119GO:0033612: receptor serine/threonine kinase binding2.12E-02
120GO:0047262: polygalacturonate 4-alpha-galacturonosyltransferase activity2.26E-02
121GO:0030570: pectate lyase activity2.40E-02
122GO:0047134: protein-disulfide reductase activity2.70E-02
123GO:0003713: transcription coactivator activity3.01E-02
124GO:0016740: transferase activity3.14E-02
125GO:0004791: thioredoxin-disulfide reductase activity3.17E-02
126GO:0005355: glucose transmembrane transporter activity3.17E-02
127GO:0016705: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen3.31E-02
128GO:0004674: protein serine/threonine kinase activity3.33E-02
129GO:0019901: protein kinase binding3.33E-02
130GO:0048038: quinone binding3.50E-02
131GO:0003924: GTPase activity3.63E-02
132GO:0016491: oxidoreductase activity3.71E-02
133GO:0016671: oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor3.84E-02
134GO:0051015: actin filament binding3.84E-02
135GO:0016301: kinase activity4.04E-02
136GO:0008237: metallopeptidase activity4.19E-02
137GO:0016413: O-acetyltransferase activity4.36E-02
138GO:0004672: protein kinase activity4.43E-02
139GO:0008017: microtubule binding4.64E-02
140GO:0008375: acetylglucosaminyltransferase activity4.91E-02
RankGO TermAdjusted P value
1GO:0009507: chloroplast1.77E-12
2GO:0009534: chloroplast thylakoid1.08E-08
3GO:0009570: chloroplast stroma3.25E-08
4GO:0009941: chloroplast envelope7.05E-08
5GO:0009535: chloroplast thylakoid membrane1.58E-05
6GO:0009543: chloroplast thylakoid lumen2.63E-05
7GO:0031977: thylakoid lumen2.72E-05
8GO:0005886: plasma membrane3.83E-05
9GO:0009533: chloroplast stromal thylakoid2.99E-04
10GO:0032541: cortical endoplasmic reticulum3.47E-04
11GO:0030956: glutamyl-tRNA(Gln) amidotransferase complex3.47E-04
12GO:0009897: external side of plasma membrane1.22E-03
13GO:0010007: magnesium chelatase complex1.22E-03
14GO:0031969: chloroplast membrane1.28E-03
15GO:0032432: actin filament bundle1.76E-03
16GO:0009898: cytoplasmic side of plasma membrane2.37E-03
17GO:0010287: plastoglobule6.05E-03
18GO:0009501: amyloplast6.17E-03
19GO:0010598: NAD(P)H dehydrogenase complex (plastoquinone)8.04E-03
20GO:0005618: cell wall8.68E-03
21GO:0009579: thylakoid9.51E-03
22GO:0016459: myosin complex1.01E-02
23GO:0005884: actin filament1.12E-02
24GO:0032040: small-subunit processome1.23E-02
25GO:0016021: integral component of membrane1.31E-02
26GO:0046658: anchored component of plasma membrane1.40E-02
27GO:0000139: Golgi membrane1.43E-02
28GO:0030659: cytoplasmic vesicle membrane1.46E-02
29GO:0030095: chloroplast photosystem II1.46E-02
30GO:0043234: protein complex1.71E-02
31GO:0005875: microtubule associated complex1.71E-02
32GO:0009654: photosystem II oxygen evolving complex1.98E-02
33GO:0019898: extrinsic component of membrane3.33E-02
34GO:0048046: apoplast3.94E-02
35GO:0031225: anchored component of membrane4.47E-02
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Gene type



Gene DE type