GO Enrichment Analysis of Co-expressed Genes with
AT3G60620
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0090071: negative regulation of ribosome biogenesis | 0.00E+00 |
| 2 | GO:0042821: pyridoxal biosynthetic process | 0.00E+00 |
| 3 | GO:0070272: proton-transporting ATP synthase complex biogenesis | 0.00E+00 |
| 4 | GO:0097164: ammonium ion metabolic process | 0.00E+00 |
| 5 | GO:0006223: uracil salvage | 0.00E+00 |
| 6 | GO:0060416: response to growth hormone | 0.00E+00 |
| 7 | GO:0042820: vitamin B6 catabolic process | 0.00E+00 |
| 8 | GO:1905499: trichome papilla formation | 0.00E+00 |
| 9 | GO:0006399: tRNA metabolic process | 0.00E+00 |
| 10 | GO:0070125: mitochondrial translational elongation | 0.00E+00 |
| 11 | GO:0032194: ubiquinone biosynthetic process via 3,4-dihydroxy-5-polyprenylbenzoate | 0.00E+00 |
| 12 | GO:0010027: thylakoid membrane organization | 8.28E-06 |
| 13 | GO:0042372: phylloquinone biosynthetic process | 6.27E-05 |
| 14 | GO:0006353: DNA-templated transcription, termination | 1.08E-04 |
| 15 | GO:0032502: developmental process | 1.13E-04 |
| 16 | GO:0032544: plastid translation | 1.36E-04 |
| 17 | GO:0006438: valyl-tRNA aminoacylation | 1.52E-04 |
| 18 | GO:0009443: pyridoxal 5'-phosphate salvage | 1.52E-04 |
| 19 | GO:0042371: vitamin K biosynthetic process | 1.52E-04 |
| 20 | GO:0006436: tryptophanyl-tRNA aminoacylation | 1.52E-04 |
| 21 | GO:0015995: chlorophyll biosynthetic process | 2.20E-04 |
| 22 | GO:0070981: L-asparagine biosynthetic process | 3.47E-04 |
| 23 | GO:0018026: peptidyl-lysine monomethylation | 3.47E-04 |
| 24 | GO:0080148: negative regulation of response to water deprivation | 3.47E-04 |
| 25 | GO:0006529: asparagine biosynthetic process | 3.47E-04 |
| 26 | GO:0008616: queuosine biosynthetic process | 3.47E-04 |
| 27 | GO:0010207: photosystem II assembly | 4.07E-04 |
| 28 | GO:0015675: nickel cation transport | 5.68E-04 |
| 29 | GO:0006617: SRP-dependent cotranslational protein targeting to membrane, signal sequence recognition | 5.68E-04 |
| 30 | GO:0006518: peptide metabolic process | 5.68E-04 |
| 31 | GO:0051604: protein maturation | 5.68E-04 |
| 32 | GO:0006418: tRNA aminoacylation for protein translation | 6.20E-04 |
| 33 | GO:0009658: chloroplast organization | 6.49E-04 |
| 34 | GO:0006241: CTP biosynthetic process | 8.13E-04 |
| 35 | GO:0006165: nucleoside diphosphate phosphorylation | 8.13E-04 |
| 36 | GO:0006228: UTP biosynthetic process | 8.13E-04 |
| 37 | GO:0009052: pentose-phosphate shunt, non-oxidative branch | 8.13E-04 |
| 38 | GO:0046739: transport of virus in multicellular host | 8.13E-04 |
| 39 | GO:2001141: regulation of RNA biosynthetic process | 8.13E-04 |
| 40 | GO:0010239: chloroplast mRNA processing | 8.13E-04 |
| 41 | GO:0044206: UMP salvage | 1.08E-03 |
| 42 | GO:0006749: glutathione metabolic process | 1.08E-03 |
| 43 | GO:0006021: inositol biosynthetic process | 1.08E-03 |
| 44 | GO:0006808: regulation of nitrogen utilization | 1.08E-03 |
| 45 | GO:0006183: GTP biosynthetic process | 1.08E-03 |
| 46 | GO:0009793: embryo development ending in seed dormancy | 1.16E-03 |
| 47 | GO:0043097: pyrimidine nucleoside salvage | 1.36E-03 |
| 48 | GO:0010236: plastoquinone biosynthetic process | 1.36E-03 |
| 49 | GO:0045038: protein import into chloroplast thylakoid membrane | 1.36E-03 |
| 50 | GO:0006665: sphingolipid metabolic process | 1.36E-03 |
| 51 | GO:0006206: pyrimidine nucleobase metabolic process | 1.67E-03 |
| 52 | GO:0006655: phosphatidylglycerol biosynthetic process | 1.67E-03 |
| 53 | GO:0046855: inositol phosphate dephosphorylation | 1.67E-03 |
| 54 | GO:0042793: transcription from plastid promoter | 1.67E-03 |
| 55 | GO:0010190: cytochrome b6f complex assembly | 1.67E-03 |
| 56 | GO:0006633: fatty acid biosynthetic process | 1.91E-03 |
| 57 | GO:1901259: chloroplast rRNA processing | 2.01E-03 |
| 58 | GO:0017148: negative regulation of translation | 2.01E-03 |
| 59 | GO:0048280: vesicle fusion with Golgi apparatus | 2.01E-03 |
| 60 | GO:0030488: tRNA methylation | 2.01E-03 |
| 61 | GO:0010019: chloroplast-nucleus signaling pathway | 2.01E-03 |
| 62 | GO:0006614: SRP-dependent cotranslational protein targeting to membrane | 2.36E-03 |
| 63 | GO:0009772: photosynthetic electron transport in photosystem II | 2.36E-03 |
| 64 | GO:0042255: ribosome assembly | 2.73E-03 |
| 65 | GO:0006875: cellular metal ion homeostasis | 2.73E-03 |
| 66 | GO:0009690: cytokinin metabolic process | 2.73E-03 |
| 67 | GO:0006605: protein targeting | 2.73E-03 |
| 68 | GO:0009704: de-etiolation | 2.73E-03 |
| 69 | GO:0052543: callose deposition in cell wall | 2.73E-03 |
| 70 | GO:0048564: photosystem I assembly | 2.73E-03 |
| 71 | GO:0045292: mRNA cis splicing, via spliceosome | 2.73E-03 |
| 72 | GO:0010497: plasmodesmata-mediated intercellular transport | 3.12E-03 |
| 73 | GO:0009657: plastid organization | 3.12E-03 |
| 74 | GO:0017004: cytochrome complex assembly | 3.12E-03 |
| 75 | GO:0071482: cellular response to light stimulus | 3.12E-03 |
| 76 | GO:0000373: Group II intron splicing | 3.53E-03 |
| 77 | GO:0048589: developmental growth | 3.53E-03 |
| 78 | GO:0042761: very long-chain fatty acid biosynthetic process | 3.96E-03 |
| 79 | GO:0006779: porphyrin-containing compound biosynthetic process | 3.96E-03 |
| 80 | GO:0006896: Golgi to vacuole transport | 4.40E-03 |
| 81 | GO:0006782: protoporphyrinogen IX biosynthetic process | 4.40E-03 |
| 82 | GO:0006535: cysteine biosynthetic process from serine | 4.40E-03 |
| 83 | GO:0045036: protein targeting to chloroplast | 4.40E-03 |
| 84 | GO:0006415: translational termination | 4.86E-03 |
| 85 | GO:0009073: aromatic amino acid family biosynthetic process | 4.86E-03 |
| 86 | GO:0006352: DNA-templated transcription, initiation | 4.86E-03 |
| 87 | GO:0016024: CDP-diacylglycerol biosynthetic process | 5.34E-03 |
| 88 | GO:0045037: protein import into chloroplast stroma | 5.34E-03 |
| 89 | GO:0006790: sulfur compound metabolic process | 5.34E-03 |
| 90 | GO:0006541: glutamine metabolic process | 6.33E-03 |
| 91 | GO:0019853: L-ascorbic acid biosynthetic process | 6.86E-03 |
| 92 | GO:0046854: phosphatidylinositol phosphorylation | 6.86E-03 |
| 93 | GO:0010025: wax biosynthetic process | 7.40E-03 |
| 94 | GO:0007010: cytoskeleton organization | 7.95E-03 |
| 95 | GO:0019344: cysteine biosynthetic process | 7.95E-03 |
| 96 | GO:0009116: nucleoside metabolic process | 7.95E-03 |
| 97 | GO:0009742: brassinosteroid mediated signaling pathway | 8.23E-03 |
| 98 | GO:0008152: metabolic process | 9.12E-03 |
| 99 | GO:0016226: iron-sulfur cluster assembly | 9.69E-03 |
| 100 | GO:0009411: response to UV | 1.03E-02 |
| 101 | GO:0019722: calcium-mediated signaling | 1.09E-02 |
| 102 | GO:0010091: trichome branching | 1.09E-02 |
| 103 | GO:0009306: protein secretion | 1.09E-02 |
| 104 | GO:0042147: retrograde transport, endosome to Golgi | 1.16E-02 |
| 105 | GO:0016117: carotenoid biosynthetic process | 1.16E-02 |
| 106 | GO:0042335: cuticle development | 1.22E-02 |
| 107 | GO:0000271: polysaccharide biosynthetic process | 1.22E-02 |
| 108 | GO:0040008: regulation of growth | 1.28E-02 |
| 109 | GO:0045489: pectin biosynthetic process | 1.29E-02 |
| 110 | GO:0009741: response to brassinosteroid | 1.29E-02 |
| 111 | GO:0009646: response to absence of light | 1.36E-02 |
| 112 | GO:0009451: RNA modification | 1.38E-02 |
| 113 | GO:0006623: protein targeting to vacuole | 1.42E-02 |
| 114 | GO:0006891: intra-Golgi vesicle-mediated transport | 1.50E-02 |
| 115 | GO:0009567: double fertilization forming a zygote and endosperm | 1.71E-02 |
| 116 | GO:0007267: cell-cell signaling | 1.79E-02 |
| 117 | GO:0000910: cytokinesis | 1.86E-02 |
| 118 | GO:0016126: sterol biosynthetic process | 1.94E-02 |
| 119 | GO:0006888: ER to Golgi vesicle-mediated transport | 2.18E-02 |
| 120 | GO:0016311: dephosphorylation | 2.26E-02 |
| 121 | GO:0009817: defense response to fungus, incompatible interaction | 2.34E-02 |
| 122 | GO:0048481: plant ovule development | 2.34E-02 |
| 123 | GO:0048767: root hair elongation | 2.43E-02 |
| 124 | GO:0009813: flavonoid biosynthetic process | 2.43E-02 |
| 125 | GO:0009407: toxin catabolic process | 2.51E-02 |
| 126 | GO:0080167: response to karrikin | 2.59E-02 |
| 127 | GO:0048527: lateral root development | 2.60E-02 |
| 128 | GO:0016051: carbohydrate biosynthetic process | 2.78E-02 |
| 129 | GO:0009637: response to blue light | 2.78E-02 |
| 130 | GO:0006631: fatty acid metabolic process | 3.14E-02 |
| 131 | GO:0042542: response to hydrogen peroxide | 3.23E-02 |
| 132 | GO:0010114: response to red light | 3.32E-02 |
| 133 | GO:0009636: response to toxic substance | 3.61E-02 |
| 134 | GO:0032259: methylation | 3.65E-02 |
| 135 | GO:0042538: hyperosmotic salinity response | 3.91E-02 |
| 136 | GO:0009585: red, far-red light phototransduction | 4.11E-02 |
| 137 | GO:0051603: proteolysis involved in cellular protein catabolic process | 4.21E-02 |
| 138 | GO:0006096: glycolytic process | 4.63E-02 |
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0050236: pyridoxine:NADP 4-dehydrogenase activity | 0.00E+00 |
| 2 | GO:0000979: RNA polymerase II core promoter sequence-specific DNA binding | 0.00E+00 |
| 3 | GO:0051744: 3,8-divinyl protochlorophyllide a 8-vinyl reductase activity | 0.00E+00 |
| 4 | GO:0046428: 1,4-dihydroxy-2-naphthoate octaprenyltransferase activity | 0.00E+00 |
| 5 | GO:0019166: trans-2-enoyl-CoA reductase (NADPH) activity | 0.00E+00 |
| 6 | GO:0050613: delta14-sterol reductase activity | 0.00E+00 |
| 7 | GO:0008756: o-succinylbenzoate-CoA ligase activity | 0.00E+00 |
| 8 | GO:0004314: [acyl-carrier-protein] S-malonyltransferase activity | 0.00E+00 |
| 9 | GO:0005048: signal sequence binding | 0.00E+00 |
| 10 | GO:0009974: zeinoxanthin epsilon hydroxylase activity | 0.00E+00 |
| 11 | GO:0033728: divinyl chlorophyllide a 8-vinyl-reductase activity | 0.00E+00 |
| 12 | GO:0047450: crotonoyl-[acyl-carrier-protein] hydratase activity | 0.00E+00 |
| 13 | GO:0004071: aspartate-ammonia ligase activity | 1.52E-04 |
| 14 | GO:0009374: biotin binding | 1.52E-04 |
| 15 | GO:0015088: copper uptake transmembrane transporter activity | 1.52E-04 |
| 16 | GO:0004832: valine-tRNA ligase activity | 1.52E-04 |
| 17 | GO:0004830: tryptophan-tRNA ligase activity | 1.52E-04 |
| 18 | GO:0010347: L-galactose-1-phosphate phosphatase activity | 1.52E-04 |
| 19 | GO:0042286: glutamate-1-semialdehyde 2,1-aminomutase activity | 1.52E-04 |
| 20 | GO:0030794: (S)-coclaurine-N-methyltransferase activity | 1.52E-04 |
| 21 | GO:0004560: alpha-L-fucosidase activity | 1.52E-04 |
| 22 | GO:0050567: glutaminyl-tRNA synthase (glutamine-hydrolyzing) activity | 1.52E-04 |
| 23 | GO:0008934: inositol monophosphate 1-phosphatase activity | 3.47E-04 |
| 24 | GO:0052833: inositol monophosphate 4-phosphatase activity | 3.47E-04 |
| 25 | GO:0004066: asparagine synthase (glutamine-hydrolyzing) activity | 3.47E-04 |
| 26 | GO:0019171: 3-hydroxyacyl-[acyl-carrier-protein] dehydratase activity | 3.47E-04 |
| 27 | GO:0015099: nickel cation transmembrane transporter activity | 3.47E-04 |
| 28 | GO:0052832: inositol monophosphate 3-phosphatase activity | 3.47E-04 |
| 29 | GO:0008479: queuine tRNA-ribosyltransferase activity | 3.47E-04 |
| 30 | GO:0051536: iron-sulfur cluster binding | 5.64E-04 |
| 31 | GO:0017150: tRNA dihydrouridine synthase activity | 5.68E-04 |
| 32 | GO:0004148: dihydrolipoyl dehydrogenase activity | 5.68E-04 |
| 33 | GO:0005504: fatty acid binding | 5.68E-04 |
| 34 | GO:0004751: ribose-5-phosphate isomerase activity | 5.68E-04 |
| 35 | GO:0070402: NADPH binding | 5.68E-04 |
| 36 | GO:0016628: oxidoreductase activity, acting on the CH-CH group of donors, NAD or NADP as acceptor | 8.13E-04 |
| 37 | GO:0016851: magnesium chelatase activity | 8.13E-04 |
| 38 | GO:0016149: translation release factor activity, codon specific | 8.13E-04 |
| 39 | GO:0003865: 3-oxo-5-alpha-steroid 4-dehydrogenase activity | 8.13E-04 |
| 40 | GO:0004550: nucleoside diphosphate kinase activity | 8.13E-04 |
| 41 | GO:0043023: ribosomal large subunit binding | 8.13E-04 |
| 42 | GO:0008097: 5S rRNA binding | 8.13E-04 |
| 43 | GO:0001872: (1->3)-beta-D-glucan binding | 8.13E-04 |
| 44 | GO:0004742: dihydrolipoyllysine-residue acetyltransferase activity | 8.13E-04 |
| 45 | GO:0004812: aminoacyl-tRNA ligase activity | 9.45E-04 |
| 46 | GO:0016987: sigma factor activity | 1.08E-03 |
| 47 | GO:0045430: chalcone isomerase activity | 1.08E-03 |
| 48 | GO:0003841: 1-acylglycerol-3-phosphate O-acyltransferase activity | 1.08E-03 |
| 49 | GO:0004659: prenyltransferase activity | 1.08E-03 |
| 50 | GO:0016279: protein-lysine N-methyltransferase activity | 1.08E-03 |
| 51 | GO:0001053: plastid sigma factor activity | 1.08E-03 |
| 52 | GO:0004845: uracil phosphoribosyltransferase activity | 1.08E-03 |
| 53 | GO:0004040: amidase activity | 1.36E-03 |
| 54 | GO:0030414: peptidase inhibitor activity | 1.36E-03 |
| 55 | GO:0003989: acetyl-CoA carboxylase activity | 1.36E-03 |
| 56 | GO:0009922: fatty acid elongase activity | 1.36E-03 |
| 57 | GO:0016208: AMP binding | 1.67E-03 |
| 58 | GO:0008441: 3'(2'),5'-bisphosphate nucleotidase activity | 2.01E-03 |
| 59 | GO:0004849: uridine kinase activity | 2.01E-03 |
| 60 | GO:0004124: cysteine synthase activity | 2.01E-03 |
| 61 | GO:0015450: P-P-bond-hydrolysis-driven protein transmembrane transporter activity | 2.49E-03 |
| 62 | GO:0004033: aldo-keto reductase (NADP) activity | 2.73E-03 |
| 63 | GO:0008312: 7S RNA binding | 2.73E-03 |
| 64 | GO:0003747: translation release factor activity | 3.53E-03 |
| 65 | GO:0016627: oxidoreductase activity, acting on the CH-CH group of donors | 3.53E-03 |
| 66 | GO:0005381: iron ion transmembrane transporter activity | 3.96E-03 |
| 67 | GO:0003755: peptidyl-prolyl cis-trans isomerase activity | 4.72E-03 |
| 68 | GO:0031072: heat shock protein binding | 5.83E-03 |
| 69 | GO:0042803: protein homodimerization activity | 6.55E-03 |
| 70 | GO:0005528: FK506 binding | 7.95E-03 |
| 71 | GO:0004176: ATP-dependent peptidase activity | 9.10E-03 |
| 72 | GO:0016758: transferase activity, transferring hexosyl groups | 9.46E-03 |
| 73 | GO:0047262: polygalacturonate 4-alpha-galacturonosyltransferase activity | 9.69E-03 |
| 74 | GO:0019843: rRNA binding | 9.73E-03 |
| 75 | GO:0030170: pyridoxal phosphate binding | 1.08E-02 |
| 76 | GO:0003727: single-stranded RNA binding | 1.09E-02 |
| 77 | GO:0010181: FMN binding | 1.36E-02 |
| 78 | GO:0016491: oxidoreductase activity | 1.70E-02 |
| 79 | GO:0008483: transaminase activity | 1.79E-02 |
| 80 | GO:0008237: metallopeptidase activity | 1.79E-02 |
| 81 | GO:0005200: structural constituent of cytoskeleton | 1.79E-02 |
| 82 | GO:0008168: methyltransferase activity | 2.01E-02 |
| 83 | GO:0016740: transferase activity | 2.15E-02 |
| 84 | GO:0030247: polysaccharide binding | 2.18E-02 |
| 85 | GO:0008236: serine-type peptidase activity | 2.26E-02 |
| 86 | GO:0004222: metalloendopeptidase activity | 2.51E-02 |
| 87 | GO:0003746: translation elongation factor activity | 2.78E-02 |
| 88 | GO:0052689: carboxylic ester hydrolase activity | 2.86E-02 |
| 89 | GO:0003993: acid phosphatase activity | 2.86E-02 |
| 90 | GO:0000149: SNARE binding | 2.95E-02 |
| 91 | GO:0005525: GTP binding | 3.12E-02 |
| 92 | GO:0004364: glutathione transferase activity | 3.23E-02 |
| 93 | GO:0005484: SNAP receptor activity | 3.32E-02 |
| 94 | GO:0004185: serine-type carboxypeptidase activity | 3.32E-02 |
| 95 | GO:0043621: protein self-association | 3.52E-02 |
| 96 | GO:0003924: GTPase activity | 3.81E-02 |
| 97 | GO:0003899: DNA-directed 5'-3' RNA polymerase activity | 4.11E-02 |
| 98 | GO:0004519: endonuclease activity | 4.14E-02 |
| 99 | GO:0003690: double-stranded DNA binding | 4.21E-02 |
| 100 | GO:0004650: polygalacturonase activity | 4.95E-02 |
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0009507: chloroplast | 2.83E-32 |
| 2 | GO:0009941: chloroplast envelope | 1.82E-15 |
| 3 | GO:0009570: chloroplast stroma | 4.22E-15 |
| 4 | GO:0009536: plastid | 5.37E-05 |
| 5 | GO:0009535: chloroplast thylakoid membrane | 6.74E-05 |
| 6 | GO:0030956: glutamyl-tRNA(Gln) amidotransferase complex | 1.52E-04 |
| 7 | GO:0009923: fatty acid elongase complex | 1.52E-04 |
| 8 | GO:0080085: signal recognition particle, chloroplast targeting | 3.47E-04 |
| 9 | GO:0000427: plastid-encoded plastid RNA polymerase complex | 3.47E-04 |
| 10 | GO:0009508: plastid chromosome | 3.61E-04 |
| 11 | GO:0009509: chromoplast | 5.68E-04 |
| 12 | GO:0009317: acetyl-CoA carboxylase complex | 5.68E-04 |
| 13 | GO:0031969: chloroplast membrane | 8.97E-04 |
| 14 | GO:0031897: Tic complex | 1.08E-03 |
| 15 | GO:0009526: plastid envelope | 1.08E-03 |
| 16 | GO:0009579: thylakoid | 1.17E-03 |
| 17 | GO:0055035: plastid thylakoid membrane | 1.36E-03 |
| 18 | GO:0009543: chloroplast thylakoid lumen | 1.43E-03 |
| 19 | GO:0009295: nucleoid | 1.71E-03 |
| 20 | GO:0009707: chloroplast outer membrane | 2.49E-03 |
| 21 | GO:0012507: ER to Golgi transport vesicle membrane | 2.73E-03 |
| 22 | GO:0046658: anchored component of plasma membrane | 3.07E-03 |
| 23 | GO:0005786: signal recognition particle, endoplasmic reticulum targeting | 3.12E-03 |
| 24 | GO:0030176: integral component of endoplasmic reticulum membrane | 6.86E-03 |
| 25 | GO:0009706: chloroplast inner membrane | 7.76E-03 |
| 26 | GO:0009504: cell plate | 1.42E-02 |
| 27 | GO:0005778: peroxisomal membrane | 1.79E-02 |
| 28 | GO:0009534: chloroplast thylakoid | 2.12E-02 |
| 29 | GO:0048046: apoplast | 2.73E-02 |
| 30 | GO:0031225: anchored component of membrane | 2.92E-02 |
| 31 | GO:0031902: late endosome membrane | 3.14E-02 |
| 32 | GO:0031977: thylakoid lumen | 3.14E-02 |
| 33 | GO:0031201: SNARE complex | 3.14E-02 |
| 34 | GO:0005856: cytoskeleton | 3.61E-02 |
| 35 | GO:0005840: ribosome | 4.27E-02 |
| 36 | GO:0009506: plasmodesma | 4.65E-02 |