Gene type: Transcription factor Metabolic gene Others DE type: Up Down Slightly_up Slightly_down Mixeded Others

GO Enrichment Analysis of Co-expressed Genes with

AT3G60540

GO-BP
GO-MF
GO-CC
RankGO TermAdjusted P value
1GO:0072722: response to amitrole0.00E+00
2GO:0006042: glucosamine biosynthetic process0.00E+00
3GO:1901137: carbohydrate derivative biosynthetic process0.00E+00
4GO:0045047: protein targeting to ER0.00E+00
5GO:0002376: immune system process0.00E+00
6GO:0006616: SRP-dependent cotranslational protein targeting to membrane, translocation0.00E+00
7GO:0006721: terpenoid metabolic process0.00E+00
8GO:0019307: mannose biosynthetic process0.00E+00
9GO:0006457: protein folding1.80E-12
10GO:0034976: response to endoplasmic reticulum stress8.47E-12
11GO:0009627: systemic acquired resistance3.41E-09
12GO:0046686: response to cadmium ion1.05E-08
13GO:0010150: leaf senescence1.80E-07
14GO:0018279: protein N-linked glycosylation via asparagine9.17E-07
15GO:0000162: tryptophan biosynthetic process2.94E-06
16GO:0042742: defense response to bacterium3.44E-06
17GO:0031204: posttranslational protein targeting to membrane, translocation3.96E-06
18GO:0045454: cell redox homeostasis4.37E-06
19GO:0009617: response to bacterium5.01E-06
20GO:0030968: endoplasmic reticulum unfolded protein response1.09E-05
21GO:0006979: response to oxidative stress2.27E-05
22GO:0072334: UDP-galactose transmembrane transport3.17E-05
23GO:0009697: salicylic acid biosynthetic process8.98E-05
24GO:0009651: response to salt stress1.25E-04
25GO:0006099: tricarboxylic acid cycle1.50E-04
26GO:0052033: pathogen-associated molecular pattern dependent induction by symbiont of host innate immune response1.78E-04
27GO:0009306: protein secretion2.05E-04
28GO:0034975: protein folding in endoplasmic reticulum2.94E-04
29GO:0006047: UDP-N-acetylglucosamine metabolic process2.94E-04
30GO:0016487: farnesol metabolic process2.94E-04
31GO:0030091: protein repair2.94E-04
32GO:0009700: indole phytoalexin biosynthetic process2.94E-04
33GO:0043687: post-translational protein modification2.94E-04
34GO:0010230: alternative respiration2.94E-04
35GO:0006605: protein targeting2.94E-04
36GO:0043266: regulation of potassium ion transport2.94E-04
37GO:0050691: regulation of defense response to virus by host2.94E-04
38GO:0051775: response to redox state2.94E-04
39GO:0042964: thioredoxin reduction2.94E-04
40GO:0046244: salicylic acid catabolic process2.94E-04
41GO:0010266: response to vitamin B12.94E-04
42GO:0019276: UDP-N-acetylgalactosamine metabolic process2.94E-04
43GO:0006102: isocitrate metabolic process2.94E-04
44GO:0010120: camalexin biosynthetic process3.62E-04
45GO:0000302: response to reactive oxygen species3.75E-04
46GO:0046685: response to arsenic-containing substance4.36E-04
47GO:0015780: nucleotide-sugar transport4.36E-04
48GO:0009553: embryo sac development5.83E-04
49GO:0006511: ubiquitin-dependent protein catabolic process6.27E-04
50GO:0080151: positive regulation of salicylic acid mediated signaling pathway6.45E-04
51GO:0031349: positive regulation of defense response6.45E-04
52GO:0033512: L-lysine catabolic process to acetyl-CoA via saccharopine6.45E-04
53GO:0030003: cellular cation homeostasis6.45E-04
54GO:0009682: induced systemic resistance6.94E-04
55GO:0002237: response to molecule of bacterial origin1.01E-03
56GO:0006011: UDP-glucose metabolic process1.04E-03
57GO:0010272: response to silver ion1.04E-03
58GO:0006421: asparaginyl-tRNA aminoacylation1.04E-03
59GO:0006048: UDP-N-acetylglucosamine biosynthetic process1.04E-03
60GO:0006954: inflammatory response1.04E-03
61GO:0006013: mannose metabolic process1.04E-03
62GO:0002230: positive regulation of defense response to virus by host1.04E-03
63GO:0055074: calcium ion homeostasis1.04E-03
64GO:0072661: protein targeting to plasma membrane1.04E-03
65GO:0006487: protein N-linked glycosylation1.39E-03
66GO:0042542: response to hydrogen peroxide1.48E-03
67GO:0002239: response to oomycetes1.50E-03
68GO:0033014: tetrapyrrole biosynthetic process1.50E-03
69GO:0015700: arsenite transport1.50E-03
70GO:1902290: positive regulation of defense response to oomycetes1.50E-03
71GO:0010116: positive regulation of abscisic acid biosynthetic process1.50E-03
72GO:0009298: GDP-mannose biosynthetic process1.50E-03
73GO:0051707: response to other organism1.56E-03
74GO:0009751: response to salicylic acid1.61E-03
75GO:0031348: negative regulation of defense response1.83E-03
76GO:0071456: cellular response to hypoxia1.83E-03
77GO:0031347: regulation of defense response1.98E-03
78GO:0009625: response to insect2.00E-03
79GO:0051365: cellular response to potassium ion starvation2.01E-03
80GO:0010483: pollen tube reception2.01E-03
81GO:0019287: isopentenyl diphosphate biosynthetic process, mevalonate pathway2.01E-03
82GO:0000956: nuclear-transcribed mRNA catabolic process2.01E-03
83GO:0015031: protein transport2.54E-03
84GO:0000304: response to singlet oxygen2.56E-03
85GO:0046283: anthocyanin-containing compound metabolic process2.56E-03
86GO:0009409: response to cold2.92E-03
87GO:0048316: seed development2.93E-03
88GO:0009920: cell plate formation involved in plant-type cell wall biogenesis3.16E-03
89GO:0047484: regulation of response to osmotic stress3.16E-03
90GO:0042372: phylloquinone biosynthetic process3.81E-03
91GO:0009423: chorismate biosynthetic process3.81E-03
92GO:0010555: response to mannitol3.81E-03
93GO:0030163: protein catabolic process3.85E-03
94GO:0010200: response to chitin3.97E-03
95GO:0006952: defense response4.47E-03
96GO:0006122: mitochondrial electron transport, ubiquinol to cytochrome c4.49E-03
97GO:1900057: positive regulation of leaf senescence4.49E-03
98GO:1902074: response to salt4.49E-03
99GO:0009414: response to water deprivation4.68E-03
100GO:0055114: oxidation-reduction process4.71E-03
101GO:0009615: response to virus4.88E-03
102GO:0009787: regulation of abscisic acid-activated signaling pathway5.21E-03
103GO:0018401: peptidyl-proline hydroxylation to 4-hydroxy-L-proline5.21E-03
104GO:0009819: drought recovery5.21E-03
105GO:0006875: cellular metal ion homeostasis5.21E-03
106GO:0031540: regulation of anthocyanin biosynthetic process5.21E-03
107GO:0055075: potassium ion homeostasis5.21E-03
108GO:0006906: vesicle fusion5.45E-03
109GO:0009699: phenylpropanoid biosynthetic process5.98E-03
110GO:0019430: removal of superoxide radicals5.98E-03
111GO:0010204: defense response signaling pathway, resistance gene-independent5.98E-03
112GO:0006783: heme biosynthetic process6.77E-03
113GO:0010112: regulation of systemic acquired resistance6.77E-03
114GO:0009408: response to heat6.81E-03
115GO:0006499: N-terminal protein myristoylation7.03E-03
116GO:0007568: aging7.37E-03
117GO:0010043: response to zinc ion7.37E-03
118GO:1900426: positive regulation of defense response to bacterium7.60E-03
119GO:0010205: photoinhibition7.60E-03
120GO:0043067: regulation of programmed cell death7.60E-03
121GO:0009862: systemic acquired resistance, salicylic acid mediated signaling pathway7.60E-03
122GO:0006032: chitin catabolic process8.48E-03
123GO:0006816: calcium ion transport9.38E-03
124GO:0009089: lysine biosynthetic process via diaminopimelate9.38E-03
125GO:0052544: defense response by callose deposition in cell wall9.38E-03
126GO:0009073: aromatic amino acid family biosynthetic process9.38E-03
127GO:0000272: polysaccharide catabolic process9.38E-03
128GO:0006887: exocytosis9.61E-03
129GO:0006790: sulfur compound metabolic process1.03E-02
130GO:0002213: defense response to insect1.03E-02
131GO:0006094: gluconeogenesis1.13E-02
132GO:0018107: peptidyl-threonine phosphorylation1.13E-02
133GO:0010075: regulation of meristem growth1.13E-02
134GO:0009934: regulation of meristem structural organization1.23E-02
135GO:0006541: glutamine metabolic process1.23E-02
136GO:0009846: pollen germination1.31E-02
137GO:0019853: L-ascorbic acid biosynthetic process1.33E-02
138GO:0046854: phosphatidylinositol phosphorylation1.33E-02
139GO:0006486: protein glycosylation1.41E-02
140GO:0051603: proteolysis involved in cellular protein catabolic process1.46E-02
141GO:0009863: salicylic acid mediated signaling pathway1.55E-02
142GO:0080147: root hair cell development1.55E-02
143GO:2000377: regulation of reactive oxygen species metabolic process1.55E-02
144GO:0009555: pollen development1.62E-02
145GO:0006874: cellular calcium ion homeostasis1.66E-02
146GO:0016192: vesicle-mediated transport1.75E-02
147GO:0009626: plant-type hypersensitive response1.78E-02
148GO:0016998: cell wall macromolecule catabolic process1.78E-02
149GO:0015992: proton transport1.78E-02
150GO:0030433: ubiquitin-dependent ERAD pathway1.90E-02
151GO:0019748: secondary metabolic process1.90E-02
152GO:0009411: response to UV2.02E-02
153GO:0010227: floral organ abscission2.02E-02
154GO:0009737: response to abscisic acid2.12E-02
155GO:0006886: intracellular protein transport2.14E-02
156GO:0019722: calcium-mediated signaling2.14E-02
157GO:0010118: stomatal movement2.40E-02
158GO:0042631: cellular response to water deprivation2.40E-02
159GO:0000413: protein peptidyl-prolyl isomerization2.40E-02
160GO:0006468: protein phosphorylation2.42E-02
161GO:0010154: fruit development2.53E-02
162GO:0010197: polar nucleus fusion2.53E-02
163GO:0048868: pollen tube development2.53E-02
164GO:0009646: response to absence of light2.66E-02
165GO:0009851: auxin biosynthetic process2.80E-02
166GO:0009790: embryo development2.94E-02
167GO:0002229: defense response to oomycetes2.94E-02
168GO:0010193: response to ozone2.94E-02
169GO:0009630: gravitropism3.08E-02
170GO:0007264: small GTPase mediated signal transduction3.08E-02
171GO:0009567: double fertilization forming a zygote and endosperm3.37E-02
172GO:0006464: cellular protein modification process3.37E-02
173GO:0016126: sterol biosynthetic process3.82E-02
174GO:0043161: proteasome-mediated ubiquitin-dependent protein catabolic process3.88E-02
175GO:0050832: defense response to fungus3.91E-02
176GO:0009788: negative regulation of abscisic acid-activated signaling pathway3.97E-02
177GO:0009816: defense response to bacterium, incompatible interaction3.97E-02
178GO:0015995: chlorophyll biosynthetic process4.29E-02
179GO:0006950: response to stress4.29E-02
180GO:0016311: dephosphorylation4.44E-02
181GO:0016049: cell growth4.44E-02
182GO:0009817: defense response to fungus, incompatible interaction4.61E-02
183GO:0008219: cell death4.61E-02
184GO:0009735: response to cytokinin4.86E-02
RankGO TermAdjusted P value
1GO:0004615: phosphomannomutase activity0.00E+00
2GO:0050269: coniferyl-aldehyde dehydrogenase activity0.00E+00
3GO:0047720: indoleacetaldoxime dehydratase activity0.00E+00
4GO:0004631: phosphomevalonate kinase activity0.00E+00
5GO:0010298: dihydrocamalexic acid decarboxylase activity0.00E+00
6GO:0003980: UDP-glucose:glycoprotein glucosyltransferase activity0.00E+00
7GO:0016312: inositol bisphosphate phosphatase activity0.00E+00
8GO:0004107: chorismate synthase activity0.00E+00
9GO:0015165: pyrimidine nucleotide-sugar transmembrane transporter activity0.00E+00
10GO:0047886: farnesol dehydrogenase activity0.00E+00
11GO:0004360: glutamine-fructose-6-phosphate transaminase (isomerizing) activity0.00E+00
12GO:0003756: protein disulfide isomerase activity8.82E-11
13GO:0004298: threonine-type endopeptidase activity2.21E-09
14GO:0005459: UDP-galactose transmembrane transporter activity9.17E-07
15GO:0004579: dolichyl-diphosphooligosaccharide-protein glycotransferase activity9.17E-07
16GO:0008233: peptidase activity2.10E-06
17GO:0051082: unfolded protein binding7.06E-06
18GO:0004449: isocitrate dehydrogenase (NAD+) activity3.17E-05
19GO:0005460: UDP-glucose transmembrane transporter activity3.17E-05
20GO:0016004: phospholipase activator activity5.68E-05
21GO:0033743: peptide-methionine (R)-S-oxide reductase activity1.78E-04
22GO:0052630: UDP-N-acetylgalactosamine diphosphorylase activity2.94E-04
23GO:0008886: glyceraldehyde-3-phosphate dehydrogenase (NADP+) (non-phosphorylating) activity2.94E-04
24GO:0004425: indole-3-glycerol-phosphate synthase activity2.94E-04
25GO:0033984: indole-3-glycerol-phosphate lyase activity2.94E-04
26GO:0097367: carbohydrate derivative binding2.94E-04
27GO:0004048: anthranilate phosphoribosyltransferase activity2.94E-04
28GO:0004591: oxoglutarate dehydrogenase (succinyl-transferring) activity2.94E-04
29GO:0015157: oligosaccharide transmembrane transporter activity2.94E-04
30GO:0048037: cofactor binding2.94E-04
31GO:0008909: isochorismate synthase activity2.94E-04
32GO:0004325: ferrochelatase activity2.94E-04
33GO:0003977: UDP-N-acetylglucosamine diphosphorylase activity2.94E-04
34GO:0010285: L,L-diaminopimelate aminotransferase activity2.94E-04
35GO:0004149: dihydrolipoyllysine-residue succinyltransferase activity2.94E-04
36GO:0005509: calcium ion binding3.63E-04
37GO:0015105: arsenite transmembrane transporter activity6.45E-04
38GO:0004775: succinate-CoA ligase (ADP-forming) activity6.45E-04
39GO:0004338: glucan exo-1,3-beta-glucosidase activity6.45E-04
40GO:0004776: succinate-CoA ligase (GDP-forming) activity6.45E-04
41GO:0005507: copper ion binding6.96E-04
42GO:0015450: P-P-bond-hydrolysis-driven protein transmembrane transporter activity8.44E-04
43GO:0000030: mannosyltransferase activity1.04E-03
44GO:0004441: inositol-1,4-bisphosphate 1-phosphatase activity1.04E-03
45GO:0004148: dihydrolipoyl dehydrogenase activity1.04E-03
46GO:0004816: asparagine-tRNA ligase activity1.04E-03
47GO:0003983: UTP:glucose-1-phosphate uridylyltransferase activity1.04E-03
48GO:0004049: anthranilate synthase activity1.04E-03
49GO:0004190: aspartic-type endopeptidase activity1.13E-03
50GO:0004365: glyceraldehyde-3-phosphate dehydrogenase (NAD+) (phosphorylating) activity1.50E-03
51GO:0035529: NADH pyrophosphatase activity1.50E-03
52GO:0051287: NAD binding1.98E-03
53GO:0004834: tryptophan synthase activity2.01E-03
54GO:0005086: ARF guanyl-nucleotide exchange factor activity2.01E-03
55GO:0016820: hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances2.01E-03
56GO:0004576: oligosaccharyl transferase activity2.01E-03
57GO:0047631: ADP-ribose diphosphatase activity2.56E-03
58GO:0030976: thiamine pyrophosphate binding3.16E-03
59GO:0000210: NAD+ diphosphatase activity3.16E-03
60GO:0004029: aldehyde dehydrogenase (NAD) activity3.16E-03
61GO:0004674: protein serine/threonine kinase activity3.23E-03
62GO:0008441: 3'(2'),5'-bisphosphate nucleotidase activity3.81E-03
63GO:0005261: cation channel activity3.81E-03
64GO:0004602: glutathione peroxidase activity3.81E-03
65GO:0004656: procollagen-proline 4-dioxygenase activity3.81E-03
66GO:0008113: peptide-methionine (S)-S-oxide reductase activity3.81E-03
67GO:0008483: transaminase activity4.35E-03
68GO:0005338: nucleotide-sugar transmembrane transporter activity4.49E-03
69GO:0008121: ubiquinol-cytochrome-c reductase activity4.49E-03
70GO:0008320: protein transmembrane transporter activity4.49E-03
71GO:0030247: polysaccharide binding5.75E-03
72GO:0008135: translation factor activity, RNA binding5.98E-03
73GO:0050897: cobalt ion binding7.37E-03
74GO:0004028: 3-chloroallyl aldehyde dehydrogenase activity7.60E-03
75GO:0003746: translation elongation factor activity8.08E-03
76GO:0016706: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors8.08E-03
77GO:0004568: chitinase activity8.48E-03
78GO:0000149: SNARE binding8.83E-03
79GO:0004129: cytochrome-c oxidase activity9.38E-03
80GO:0005484: SNAP receptor activity1.04E-02
81GO:0005525: GTP binding1.08E-02
82GO:0005262: calcium channel activity1.13E-02
83GO:0004022: alcohol dehydrogenase (NAD) activity1.13E-02
84GO:0031072: heat shock protein binding1.13E-02
85GO:0042973: glucan endo-1,3-beta-D-glucosidase activity1.23E-02
86GO:0008061: chitin binding1.33E-02
87GO:0004970: ionotropic glutamate receptor activity1.33E-02
88GO:0005217: intracellular ligand-gated ion channel activity1.33E-02
89GO:0031418: L-ascorbic acid binding1.55E-02
90GO:0004540: ribonuclease activity1.78E-02
91GO:0016779: nucleotidyltransferase activity1.90E-02
92GO:0016301: kinase activity2.02E-02
93GO:0008810: cellulase activity2.02E-02
94GO:0015035: protein disulfide oxidoreductase activity2.07E-02
95GO:0016746: transferase activity, transferring acyl groups2.07E-02
96GO:0016709: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, NAD(P)H as one donor, and incorporation of one atom of oxygen2.27E-02
97GO:0004791: thioredoxin-disulfide reductase activity2.66E-02
98GO:0016853: isomerase activity2.66E-02
99GO:0050662: coenzyme binding2.66E-02
100GO:0010181: FMN binding2.66E-02
101GO:0008565: protein transporter activity3.02E-02
102GO:0016671: oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor3.22E-02
103GO:0015297: antiporter activity3.32E-02
104GO:0015250: water channel activity3.82E-02
105GO:0051213: dioxygenase activity3.82E-02
106GO:0004806: triglyceride lipase activity4.29E-02
107GO:0004683: calmodulin-dependent protein kinase activity4.29E-02
108GO:0042802: identical protein binding4.41E-02
109GO:0008757: S-adenosylmethionine-dependent methyltransferase activity4.44E-02
110GO:0005506: iron ion binding4.47E-02
111GO:0015238: drug transmembrane transporter activity4.77E-02
RankGO TermAdjusted P value
1GO:0005784: Sec61 translocon complex0.00E+00
2GO:0031205: endoplasmic reticulum Sec complex0.00E+00
3GO:0000327: lytic vacuole within protein storage vacuole0.00E+00
4GO:0005783: endoplasmic reticulum7.14E-24
5GO:0005788: endoplasmic reticulum lumen3.79E-18
6GO:0005839: proteasome core complex2.21E-09
7GO:0000502: proteasome complex4.55E-09
8GO:0005774: vacuolar membrane4.37E-08
9GO:0019773: proteasome core complex, alpha-subunit complex1.33E-07
10GO:0008250: oligosaccharyltransferase complex9.17E-07
11GO:0005789: endoplasmic reticulum membrane3.91E-06
12GO:0005886: plasma membrane8.49E-06
13GO:0005773: vacuole1.81E-05
14GO:0005829: cytosol3.07E-05
15GO:0009507: chloroplast7.38E-05
16GO:0030176: integral component of endoplasmic reticulum membrane7.60E-05
17GO:0045252: oxoglutarate dehydrogenase complex2.94E-04
18GO:0031901: early endosome membrane4.36E-04
19GO:0048046: apoplast5.15E-04
20GO:0005740: mitochondrial envelope6.02E-04
21GO:0030134: ER to Golgi transport vesicle6.45E-04
22GO:0016021: integral component of membrane8.31E-04
23GO:0016020: membrane8.83E-04
24GO:0005750: mitochondrial respiratory chain complex III1.01E-03
25GO:0005794: Golgi apparatus1.30E-03
26GO:1990726: Lsm1-7-Pat1 complex1.50E-03
27GO:0030660: Golgi-associated vesicle membrane2.01E-03
28GO:0071556: integral component of lumenal side of endoplasmic reticulum membrane2.01E-03
29GO:0016471: vacuolar proton-transporting V-type ATPase complex2.01E-03
30GO:0009505: plant-type cell wall2.46E-03
31GO:0005746: mitochondrial respiratory chain2.56E-03
32GO:0032588: trans-Golgi network membrane3.16E-03
33GO:0016592: mediator complex3.61E-03
34GO:0030173: integral component of Golgi membrane3.81E-03
35GO:0031595: nuclear proteasome complex4.49E-03
36GO:0005623: cell4.91E-03
37GO:0005688: U6 snRNP5.21E-03
38GO:0071458: integral component of cytoplasmic side of endoplasmic reticulum membrane5.21E-03
39GO:0046540: U4/U6 x U5 tri-snRNP complex5.98E-03
40GO:0000326: protein storage vacuole5.98E-03
41GO:0005765: lysosomal membrane9.38E-03
42GO:0008541: proteasome regulatory particle, lid subcomplex9.38E-03
43GO:0031201: SNARE complex9.61E-03
44GO:0009506: plasmodesma1.01E-02
45GO:0022626: cytosolic ribosome1.52E-02
46GO:0005741: mitochondrial outer membrane1.78E-02
47GO:0009536: plastid2.19E-02
48GO:0009504: cell plate2.80E-02
49GO:0005759: mitochondrial matrix3.17E-02
50GO:0032580: Golgi cisterna membrane3.37E-02
51GO:0046658: anchored component of plasma membrane4.59E-02
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Gene type



Gene DE type