GO Enrichment Analysis of Co-expressed Genes with
AT3G60380
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0090042: tubulin deacetylation | 0.00E+00 |
| 2 | GO:0000372: Group I intron splicing | 0.00E+00 |
| 3 | GO:0006003: fructose 2,6-bisphosphate metabolic process | 0.00E+00 |
| 4 | GO:0006399: tRNA metabolic process | 0.00E+00 |
| 5 | GO:0090706: specification of plant organ position | 0.00E+00 |
| 6 | GO:0061635: regulation of protein complex stability | 0.00E+00 |
| 7 | GO:0006428: isoleucyl-tRNA aminoacylation | 0.00E+00 |
| 8 | GO:0006000: fructose metabolic process | 5.61E-06 |
| 9 | GO:0080170: hydrogen peroxide transmembrane transport | 1.30E-05 |
| 10 | GO:0015994: chlorophyll metabolic process | 2.40E-05 |
| 11 | GO:0045038: protein import into chloroplast thylakoid membrane | 3.89E-05 |
| 12 | GO:0006002: fructose 6-phosphate metabolic process | 1.72E-04 |
| 13 | GO:0000476: maturation of 4.5S rRNA | 1.77E-04 |
| 14 | GO:0000967: rRNA 5'-end processing | 1.77E-04 |
| 15 | GO:0010480: microsporocyte differentiation | 1.77E-04 |
| 16 | GO:0000481: maturation of 5S rRNA | 1.77E-04 |
| 17 | GO:0042547: cell wall modification involved in multidimensional cell growth | 1.77E-04 |
| 18 | GO:0034628: 'de novo' NAD biosynthetic process from aspartate | 1.77E-04 |
| 19 | GO:0043609: regulation of carbon utilization | 1.77E-04 |
| 20 | GO:0010028: xanthophyll cycle | 1.77E-04 |
| 21 | GO:0034337: RNA folding | 1.77E-04 |
| 22 | GO:0010450: inflorescence meristem growth | 1.77E-04 |
| 23 | GO:0046901: tetrahydrofolylpolyglutamate biosynthetic process | 1.77E-04 |
| 24 | GO:0034755: iron ion transmembrane transport | 4.01E-04 |
| 25 | GO:0016122: xanthophyll metabolic process | 4.01E-04 |
| 26 | GO:0080151: positive regulation of salicylic acid mediated signaling pathway | 4.01E-04 |
| 27 | GO:0030388: fructose 1,6-bisphosphate metabolic process | 4.01E-04 |
| 28 | GO:0034470: ncRNA processing | 4.01E-04 |
| 29 | GO:0010275: NAD(P)H dehydrogenase complex assembly | 4.01E-04 |
| 30 | GO:0006094: gluconeogenesis | 4.47E-04 |
| 31 | GO:0006013: mannose metabolic process | 6.55E-04 |
| 32 | GO:0006617: SRP-dependent cotranslational protein targeting to membrane, signal sequence recognition | 6.55E-04 |
| 33 | GO:0051176: positive regulation of sulfur metabolic process | 6.55E-04 |
| 34 | GO:0045493: xylan catabolic process | 6.55E-04 |
| 35 | GO:0045165: cell fate commitment | 6.55E-04 |
| 36 | GO:0009226: nucleotide-sugar biosynthetic process | 9.34E-04 |
| 37 | GO:2001141: regulation of RNA biosynthetic process | 9.34E-04 |
| 38 | GO:1902476: chloride transmembrane transport | 9.34E-04 |
| 39 | GO:0030104: water homeostasis | 1.24E-03 |
| 40 | GO:0045727: positive regulation of translation | 1.24E-03 |
| 41 | GO:0034220: ion transmembrane transport | 1.25E-03 |
| 42 | GO:0006412: translation | 1.40E-03 |
| 43 | GO:1902183: regulation of shoot apical meristem development | 1.57E-03 |
| 44 | GO:0009435: NAD biosynthetic process | 1.57E-03 |
| 45 | GO:0010158: abaxial cell fate specification | 1.57E-03 |
| 46 | GO:0009247: glycolipid biosynthetic process | 1.57E-03 |
| 47 | GO:0032973: amino acid export | 1.94E-03 |
| 48 | GO:0000741: karyogamy | 1.94E-03 |
| 49 | GO:0006086: acetyl-CoA biosynthetic process from pyruvate | 1.94E-03 |
| 50 | GO:0006354: DNA-templated transcription, elongation | 1.94E-03 |
| 51 | GO:0006751: glutathione catabolic process | 1.94E-03 |
| 52 | GO:0000470: maturation of LSU-rRNA | 1.94E-03 |
| 53 | GO:0000462: maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) | 2.32E-03 |
| 54 | GO:0006821: chloride transport | 2.74E-03 |
| 55 | GO:0051510: regulation of unidimensional cell growth | 2.74E-03 |
| 56 | GO:0043090: amino acid import | 2.74E-03 |
| 57 | GO:0048437: floral organ development | 2.74E-03 |
| 58 | GO:0006614: SRP-dependent cotranslational protein targeting to membrane | 2.74E-03 |
| 59 | GO:0006402: mRNA catabolic process | 3.17E-03 |
| 60 | GO:0019375: galactolipid biosynthetic process | 3.17E-03 |
| 61 | GO:0032508: DNA duplex unwinding | 3.17E-03 |
| 62 | GO:0010492: maintenance of shoot apical meristem identity | 3.17E-03 |
| 63 | GO:0032544: plastid translation | 3.63E-03 |
| 64 | GO:0010093: specification of floral organ identity | 3.63E-03 |
| 65 | GO:0071482: cellular response to light stimulus | 3.63E-03 |
| 66 | GO:0048507: meristem development | 4.10E-03 |
| 67 | GO:0010206: photosystem II repair | 4.10E-03 |
| 68 | GO:0080144: amino acid homeostasis | 4.10E-03 |
| 69 | GO:2000024: regulation of leaf development | 4.10E-03 |
| 70 | GO:0000373: Group II intron splicing | 4.10E-03 |
| 71 | GO:0009060: aerobic respiration | 4.10E-03 |
| 72 | GO:0006098: pentose-phosphate shunt | 4.10E-03 |
| 73 | GO:0010205: photoinhibition | 4.60E-03 |
| 74 | GO:0009735: response to cytokinin | 4.69E-03 |
| 75 | GO:0055062: phosphate ion homeostasis | 5.11E-03 |
| 76 | GO:0009737: response to abscisic acid | 5.12E-03 |
| 77 | GO:0019684: photosynthesis, light reaction | 5.65E-03 |
| 78 | GO:0009089: lysine biosynthetic process via diaminopimelate | 5.65E-03 |
| 79 | GO:0006879: cellular iron ion homeostasis | 5.65E-03 |
| 80 | GO:0006352: DNA-templated transcription, initiation | 5.65E-03 |
| 81 | GO:0009750: response to fructose | 5.65E-03 |
| 82 | GO:0048229: gametophyte development | 5.65E-03 |
| 83 | GO:0009698: phenylpropanoid metabolic process | 5.65E-03 |
| 84 | GO:0015706: nitrate transport | 6.20E-03 |
| 85 | GO:0005983: starch catabolic process | 6.20E-03 |
| 86 | GO:0007169: transmembrane receptor protein tyrosine kinase signaling pathway | 6.77E-03 |
| 87 | GO:0006364: rRNA processing | 6.78E-03 |
| 88 | GO:0030048: actin filament-based movement | 6.78E-03 |
| 89 | GO:2000028: regulation of photoperiodism, flowering | 6.78E-03 |
| 90 | GO:0009718: anthocyanin-containing compound biosynthetic process | 6.78E-03 |
| 91 | GO:0010075: regulation of meristem growth | 6.78E-03 |
| 92 | GO:0009767: photosynthetic electron transport chain | 6.78E-03 |
| 93 | GO:0005986: sucrose biosynthetic process | 6.78E-03 |
| 94 | GO:0009933: meristem structural organization | 7.37E-03 |
| 95 | GO:0009934: regulation of meristem structural organization | 7.37E-03 |
| 96 | GO:0010030: positive regulation of seed germination | 7.98E-03 |
| 97 | GO:0010167: response to nitrate | 7.98E-03 |
| 98 | GO:0006096: glycolytic process | 8.02E-03 |
| 99 | GO:0006810: transport | 8.45E-03 |
| 100 | GO:0006636: unsaturated fatty acid biosynthetic process | 8.61E-03 |
| 101 | GO:0006833: water transport | 8.61E-03 |
| 102 | GO:0009944: polarity specification of adaxial/abaxial axis | 9.26E-03 |
| 103 | GO:0016575: histone deacetylation | 9.92E-03 |
| 104 | GO:0006418: tRNA aminoacylation for protein translation | 9.92E-03 |
| 105 | GO:0006629: lipid metabolic process | 1.06E-02 |
| 106 | GO:0061077: chaperone-mediated protein folding | 1.06E-02 |
| 107 | GO:0009814: defense response, incompatible interaction | 1.13E-02 |
| 108 | GO:0016226: iron-sulfur cluster assembly | 1.13E-02 |
| 109 | GO:0006730: one-carbon metabolic process | 1.13E-02 |
| 110 | GO:0009789: positive regulation of abscisic acid-activated signaling pathway | 1.35E-02 |
| 111 | GO:0042744: hydrogen peroxide catabolic process | 1.38E-02 |
| 112 | GO:0048653: anther development | 1.43E-02 |
| 113 | GO:0042631: cellular response to water deprivation | 1.43E-02 |
| 114 | GO:0010154: fruit development | 1.50E-02 |
| 115 | GO:0010197: polar nucleus fusion | 1.50E-02 |
| 116 | GO:0009741: response to brassinosteroid | 1.50E-02 |
| 117 | GO:0007018: microtubule-based movement | 1.58E-02 |
| 118 | GO:0009791: post-embryonic development | 1.66E-02 |
| 119 | GO:0045490: pectin catabolic process | 1.68E-02 |
| 120 | GO:0009451: RNA modification | 1.71E-02 |
| 121 | GO:0000302: response to reactive oxygen species | 1.75E-02 |
| 122 | GO:0030163: protein catabolic process | 1.91E-02 |
| 123 | GO:0071805: potassium ion transmembrane transport | 2.09E-02 |
| 124 | GO:0009416: response to light stimulus | 2.20E-02 |
| 125 | GO:0001666: response to hypoxia | 2.27E-02 |
| 126 | GO:0010027: thylakoid membrane organization | 2.27E-02 |
| 127 | GO:0042128: nitrate assimilation | 2.45E-02 |
| 128 | GO:0010411: xyloglucan metabolic process | 2.55E-02 |
| 129 | GO:0015995: chlorophyll biosynthetic process | 2.55E-02 |
| 130 | GO:0009658: chloroplast organization | 2.60E-02 |
| 131 | GO:0016311: dephosphorylation | 2.64E-02 |
| 132 | GO:0048481: plant ovule development | 2.74E-02 |
| 133 | GO:0005975: carbohydrate metabolic process | 2.90E-02 |
| 134 | GO:0006499: N-terminal protein myristoylation | 2.94E-02 |
| 135 | GO:0009637: response to blue light | 3.24E-02 |
| 136 | GO:0034599: cellular response to oxidative stress | 3.35E-02 |
| 137 | GO:0046777: protein autophosphorylation | 3.44E-02 |
| 138 | GO:0006839: mitochondrial transport | 3.56E-02 |
| 139 | GO:0015979: photosynthesis | 3.67E-02 |
| 140 | GO:0006631: fatty acid metabolic process | 3.67E-02 |
| 141 | GO:0010114: response to red light | 3.88E-02 |
| 142 | GO:0009644: response to high light intensity | 4.11E-02 |
| 143 | GO:0006855: drug transmembrane transport | 4.33E-02 |
| 144 | GO:0016042: lipid catabolic process | 4.60E-02 |
| 145 | GO:0009585: red, far-red light phototransduction | 4.80E-02 |
| 146 | GO:0006813: potassium ion transport | 4.80E-02 |
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0061634: alpha-D-xyloside xylohydrolase | 0.00E+00 |
| 2 | GO:0004822: isoleucine-tRNA ligase activity | 0.00E+00 |
| 3 | GO:0004331: fructose-2,6-bisphosphate 2-phosphatase activity | 0.00E+00 |
| 4 | GO:0003873: 6-phosphofructo-2-kinase activity | 0.00E+00 |
| 5 | GO:0043014: alpha-tubulin binding | 0.00E+00 |
| 6 | GO:0080176: xyloglucan 1,6-alpha-xylosidase activity | 0.00E+00 |
| 7 | GO:0005048: signal sequence binding | 0.00E+00 |
| 8 | GO:0047513: 1,2-alpha-L-fucosidase activity | 0.00E+00 |
| 9 | GO:0016754: sinapoylglucose-malate O-sinapoyltransferase activity | 0.00E+00 |
| 10 | GO:0046422: violaxanthin de-epoxidase activity | 0.00E+00 |
| 11 | GO:0008987: quinolinate synthetase A activity | 0.00E+00 |
| 12 | GO:0051721: protein phosphatase 2A binding | 0.00E+00 |
| 13 | GO:0042903: tubulin deacetylase activity | 0.00E+00 |
| 14 | GO:0019843: rRNA binding | 8.35E-11 |
| 15 | GO:0005528: FK506 binding | 3.50E-05 |
| 16 | GO:0003755: peptidyl-prolyl cis-trans isomerase activity | 7.90E-05 |
| 17 | GO:0016787: hydrolase activity | 1.20E-04 |
| 18 | GO:0009671: nitrate:proton symporter activity | 1.77E-04 |
| 19 | GO:0045485: omega-6 fatty acid desaturase activity | 1.77E-04 |
| 20 | GO:0003735: structural constituent of ribosome | 3.93E-04 |
| 21 | GO:0004563: beta-N-acetylhexosaminidase activity | 4.01E-04 |
| 22 | GO:0008839: 4-hydroxy-tetrahydrodipicolinate reductase | 4.01E-04 |
| 23 | GO:0047746: chlorophyllase activity | 4.01E-04 |
| 24 | GO:0003839: gamma-glutamylcyclotransferase activity | 4.01E-04 |
| 25 | GO:0004326: tetrahydrofolylpolyglutamate synthase activity | 4.01E-04 |
| 26 | GO:0046509: 1,2-diacylglycerol 3-beta-galactosyltransferase activity | 4.01E-04 |
| 27 | GO:0000095: S-adenosyl-L-methionine transmembrane transporter activity | 4.01E-04 |
| 28 | GO:0042132: fructose 1,6-bisphosphate 1-phosphatase activity | 4.01E-04 |
| 29 | GO:0047158: sinapoylglucose-sinapoylglucose O-sinapoyltransferase activity | 4.01E-04 |
| 30 | GO:0015929: hexosaminidase activity | 4.01E-04 |
| 31 | GO:0004565: beta-galactosidase activity | 4.47E-04 |
| 32 | GO:0008266: poly(U) RNA binding | 5.04E-04 |
| 33 | GO:0002161: aminoacyl-tRNA editing activity | 6.55E-04 |
| 34 | GO:0035250: UDP-galactosyltransferase activity | 9.34E-04 |
| 35 | GO:0048487: beta-tubulin binding | 9.34E-04 |
| 36 | GO:0009044: xylan 1,4-beta-xylosidase activity | 1.24E-03 |
| 37 | GO:0004607: phosphatidylcholine-sterol O-acyltransferase activity | 1.24E-03 |
| 38 | GO:0005253: anion channel activity | 1.24E-03 |
| 39 | GO:0046556: alpha-L-arabinofuranosidase activity | 1.24E-03 |
| 40 | GO:0001053: plastid sigma factor activity | 1.24E-03 |
| 41 | GO:0008574: ATP-dependent microtubule motor activity, plus-end-directed | 1.24E-03 |
| 42 | GO:0004739: pyruvate dehydrogenase (acetyl-transferring) activity | 1.24E-03 |
| 43 | GO:0016987: sigma factor activity | 1.24E-03 |
| 44 | GO:0008374: O-acyltransferase activity | 1.57E-03 |
| 45 | GO:0042578: phosphoric ester hydrolase activity | 1.94E-03 |
| 46 | GO:0005247: voltage-gated chloride channel activity | 1.94E-03 |
| 47 | GO:2001070: starch binding | 1.94E-03 |
| 48 | GO:0004332: fructose-bisphosphate aldolase activity | 1.94E-03 |
| 49 | GO:0004130: cytochrome-c peroxidase activity | 1.94E-03 |
| 50 | GO:0004559: alpha-mannosidase activity | 2.32E-03 |
| 51 | GO:0045156: electron transporter, transferring electrons within the cyclic electron transport pathway of photosynthesis activity | 2.32E-03 |
| 52 | GO:0015250: water channel activity | 2.38E-03 |
| 53 | GO:0003729: mRNA binding | 2.53E-03 |
| 54 | GO:0004033: aldo-keto reductase (NADP) activity | 3.17E-03 |
| 55 | GO:0008312: 7S RNA binding | 3.17E-03 |
| 56 | GO:0032041: NAD-dependent histone deacetylase activity (H3-K14 specific) | 3.63E-03 |
| 57 | GO:0003723: RNA binding | 3.95E-03 |
| 58 | GO:0015112: nitrate transmembrane transporter activity | 4.60E-03 |
| 59 | GO:0005381: iron ion transmembrane transporter activity | 4.60E-03 |
| 60 | GO:0008047: enzyme activator activity | 5.11E-03 |
| 61 | GO:0000049: tRNA binding | 6.20E-03 |
| 62 | GO:0003899: DNA-directed 5'-3' RNA polymerase activity | 6.78E-03 |
| 63 | GO:0016298: lipase activity | 7.02E-03 |
| 64 | GO:0003774: motor activity | 7.37E-03 |
| 65 | GO:0008146: sulfotransferase activity | 7.98E-03 |
| 66 | GO:0004407: histone deacetylase activity | 9.26E-03 |
| 67 | GO:0015079: potassium ion transmembrane transporter activity | 9.92E-03 |
| 68 | GO:0033612: receptor serine/threonine kinase binding | 1.06E-02 |
| 69 | GO:0030570: pectate lyase activity | 1.20E-02 |
| 70 | GO:0004812: aminoacyl-tRNA ligase activity | 1.35E-02 |
| 71 | GO:0004252: serine-type endopeptidase activity | 1.35E-02 |
| 72 | GO:0050662: coenzyme binding | 1.58E-02 |
| 73 | GO:0004601: peroxidase activity | 2.60E-02 |
| 74 | GO:0008236: serine-type peptidase activity | 2.64E-02 |
| 75 | GO:0000982: transcription factor activity, RNA polymerase II core promoter proximal region sequence-specific binding | 2.64E-02 |
| 76 | GO:0016788: hydrolase activity, acting on ester bonds | 2.65E-02 |
| 77 | GO:0015238: drug transmembrane transporter activity | 2.84E-02 |
| 78 | GO:0030246: carbohydrate binding | 3.19E-02 |
| 79 | GO:0000987: core promoter proximal region sequence-specific DNA binding | 3.35E-02 |
| 80 | GO:0051539: 4 iron, 4 sulfur cluster binding | 3.56E-02 |
| 81 | GO:0052689: carboxylic ester hydrolase activity | 3.56E-02 |
| 82 | GO:0004185: serine-type carboxypeptidase activity | 3.88E-02 |
| 83 | GO:0004871: signal transducer activity | 4.03E-02 |
| 84 | GO:0043621: protein self-association | 4.11E-02 |
| 85 | GO:0035091: phosphatidylinositol binding | 4.11E-02 |
| 86 | GO:0015293: symporter activity | 4.22E-02 |
| 87 | GO:0005509: calcium ion binding | 4.77E-02 |
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0005943: phosphatidylinositol 3-kinase complex, class IA | 0.00E+00 |
| 2 | GO:0009507: chloroplast | 5.22E-19 |
| 3 | GO:0009570: chloroplast stroma | 4.00E-16 |
| 4 | GO:0009941: chloroplast envelope | 2.13E-12 |
| 5 | GO:0009543: chloroplast thylakoid lumen | 2.62E-09 |
| 6 | GO:0009534: chloroplast thylakoid | 8.83E-08 |
| 7 | GO:0009535: chloroplast thylakoid membrane | 6.25E-07 |
| 8 | GO:0009579: thylakoid | 1.00E-06 |
| 9 | GO:0080085: signal recognition particle, chloroplast targeting | 1.52E-06 |
| 10 | GO:0005786: signal recognition particle, endoplasmic reticulum targeting | 1.72E-04 |
| 11 | GO:0000428: DNA-directed RNA polymerase complex | 1.77E-04 |
| 12 | GO:0009344: nitrite reductase complex [NAD(P)H] | 1.77E-04 |
| 13 | GO:0009547: plastid ribosome | 1.77E-04 |
| 14 | GO:0043674: columella | 1.77E-04 |
| 15 | GO:0000311: plastid large ribosomal subunit | 3.93E-04 |
| 16 | GO:0000312: plastid small ribosomal subunit | 5.04E-04 |
| 17 | GO:0030095: chloroplast photosystem II | 5.04E-04 |
| 18 | GO:0031977: thylakoid lumen | 5.71E-04 |
| 19 | GO:0009654: photosystem II oxygen evolving complex | 7.64E-04 |
| 20 | GO:0042646: plastid nucleoid | 9.34E-04 |
| 21 | GO:0005840: ribosome | 1.26E-03 |
| 22 | GO:0019898: extrinsic component of membrane | 1.55E-03 |
| 23 | GO:0009505: plant-type cell wall | 1.80E-03 |
| 24 | GO:0034707: chloride channel complex | 1.94E-03 |
| 25 | GO:0009295: nucleoid | 2.12E-03 |
| 26 | GO:0005762: mitochondrial large ribosomal subunit | 2.32E-03 |
| 27 | GO:0016363: nuclear matrix | 2.32E-03 |
| 28 | GO:0030529: intracellular ribonucleoprotein complex | 2.38E-03 |
| 29 | GO:0042807: central vacuole | 2.74E-03 |
| 30 | GO:0009533: chloroplast stromal thylakoid | 2.74E-03 |
| 31 | GO:0010598: NAD(P)H dehydrogenase complex (plastoquinone) | 4.10E-03 |
| 32 | GO:0016459: myosin complex | 5.11E-03 |
| 33 | GO:0032040: small-subunit processome | 6.20E-03 |
| 34 | GO:0009706: chloroplast inner membrane | 9.66E-03 |
| 35 | GO:0009532: plastid stroma | 1.06E-02 |
| 36 | GO:0005773: vacuole | 1.13E-02 |
| 37 | GO:0010287: plastoglobule | 1.15E-02 |
| 38 | GO:0005871: kinesin complex | 1.35E-02 |
| 39 | GO:0048046: apoplast | 1.45E-02 |
| 40 | GO:0005576: extracellular region | 1.66E-02 |
| 41 | GO:0009705: plant-type vacuole membrane | 1.68E-02 |
| 42 | GO:0022627: cytosolic small ribosomal subunit | 2.22E-02 |
| 43 | GO:0015934: large ribosomal subunit | 3.04E-02 |
| 44 | GO:0016020: membrane | 3.34E-02 |
| 45 | GO:0005618: cell wall | 4.52E-02 |