co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT3G60320

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0006399: tRNA metabolic process	0.00E+00
2	GO:1900000: regulation of anthocyanin catabolic process	0.00E+00
3	GO:0006428: isoleucyl-tRNA aminoacylation	0.00E+00
4	GO:0006833: water transport	4.63E-06
5	GO:0034220: ion transmembrane transport	2.22E-05
6	GO:0010444: guard mother cell differentiation	2.89E-04
7	GO:0006723: cuticle hydrocarbon biosynthetic process	3.40E-04
8	GO:0042547: cell wall modification involved in multidimensional cell growth	3.40E-04
9	GO:0034628: 'de novo' NAD biosynthetic process from aspartate	3.40E-04
10	GO:0010729: positive regulation of hydrogen peroxide biosynthetic process	3.40E-04
11	GO:0070509: calcium ion import	3.40E-04
12	GO:0007263: nitric oxide mediated signal transduction	3.40E-04
13	GO:0046520: sphingoid biosynthetic process	3.40E-04
14	GO:0009735: response to cytokinin	4.14E-04
15	GO:0006412: translation	4.54E-04
16	GO:0010583: response to cyclopentenone	5.35E-04
17	GO:0006779: porphyrin-containing compound biosynthetic process	6.32E-04
18	GO:0043069: negative regulation of programmed cell death	7.37E-04
19	GO:0006782: protoporphyrinogen IX biosynthetic process	7.37E-04
20	GO:0031648: protein destabilization	7.40E-04
21	GO:0080151: positive regulation of salicylic acid mediated signaling pathway	7.40E-04
22	GO:0006521: regulation of cellular amino acid metabolic process	7.40E-04
23	GO:0006695: cholesterol biosynthetic process	7.40E-04
24	GO:0016126: sterol biosynthetic process	7.86E-04
25	GO:0000038: very long-chain fatty acid metabolic process	8.49E-04
26	GO:0042254: ribosome biogenesis	8.60E-04
27	GO:0009742: brassinosteroid mediated signaling pathway	9.18E-04
28	GO:0015995: chlorophyll biosynthetic process	9.63E-04
29	GO:0000160: phosphorelay signal transduction system	1.16E-03
30	GO:0051176: positive regulation of sulfur metabolic process	1.20E-03
31	GO:1901527: abscisic acid-activated signaling pathway involved in stomatal movement	1.20E-03
32	GO:0043447: alkane biosynthetic process	1.20E-03
33	GO:0006013: mannose metabolic process	1.20E-03
34	GO:0006617: SRP-dependent cotranslational protein targeting to membrane, signal sequence recognition	1.20E-03
35	GO:0015840: urea transport	1.20E-03
36	GO:0007169: transmembrane receptor protein tyrosine kinase signaling pathway	1.28E-03
37	GO:0010025: wax biosynthetic process	1.54E-03
38	GO:0006633: fatty acid biosynthetic process	1.67E-03
39	GO:0005992: trehalose biosynthetic process	1.70E-03
40	GO:2001141: regulation of RNA biosynthetic process	1.72E-03
41	GO:1902476: chloride transmembrane transport	1.72E-03
42	GO:0034059: response to anoxia	1.72E-03
43	GO:0080170: hydrogen peroxide transmembrane transport	1.72E-03
44	GO:0009416: response to light stimulus	1.85E-03
45	GO:0006810: transport	1.88E-03
46	GO:0045490: pectin catabolic process	1.92E-03
47	GO:0019287: isopentenyl diphosphate biosynthetic process, mevalonate pathway	2.31E-03
48	GO:0030104: water homeostasis	2.31E-03
49	GO:0006564: L-serine biosynthetic process	2.96E-03
50	GO:0045038: protein import into chloroplast thylakoid membrane	2.96E-03
51	GO:0009435: NAD biosynthetic process	2.96E-03
52	GO:0009247: glycolipid biosynthetic process	2.96E-03
53	GO:0046785: microtubule polymerization	2.96E-03
54	GO:0009736: cytokinin-activated signaling pathway	2.97E-03
55	GO:0042631: cellular response to water deprivation	3.13E-03
56	GO:0042335: cuticle development	3.13E-03
57	GO:0009741: response to brassinosteroid	3.38E-03
58	GO:0009826: unidimensional cell growth	3.54E-03
59	GO:0006354: DNA-templated transcription, elongation	3.65E-03
60	GO:0006751: glutathione catabolic process	3.65E-03
61	GO:0042549: photosystem II stabilization	3.65E-03
62	GO:0016554: cytidine to uridine editing	3.65E-03
63	GO:1902456: regulation of stomatal opening	3.65E-03
64	GO:0032973: amino acid export	3.65E-03
65	GO:0006086: acetyl-CoA biosynthetic process from pyruvate	3.65E-03
66	GO:0000741: karyogamy	3.65E-03
67	GO:0016132: brassinosteroid biosynthetic process	4.17E-03
68	GO:0000079: regulation of cyclin-dependent protein serine/threonine kinase activity	4.40E-03
69	GO:0042372: phylloquinone biosynthetic process	4.40E-03
70	GO:0000462: maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)	4.40E-03
71	GO:0006694: steroid biosynthetic process	4.40E-03
72	GO:0051510: regulation of unidimensional cell growth	5.19E-03
73	GO:0009610: response to symbiotic fungus	5.19E-03
74	GO:0009772: photosynthetic electron transport in photosystem II	5.19E-03
75	GO:0043090: amino acid import	5.19E-03
76	GO:0030497: fatty acid elongation	5.19E-03
77	GO:0006614: SRP-dependent cotranslational protein targeting to membrane	5.19E-03
78	GO:0006821: chloride transport	5.19E-03
79	GO:0050829: defense response to Gram-negative bacterium	5.19E-03
80	GO:0006605: protein targeting	6.03E-03
81	GO:0019375: galactolipid biosynthetic process	6.03E-03
82	GO:0010027: thylakoid membrane organization	6.03E-03
83	GO:0009231: riboflavin biosynthetic process	6.03E-03
84	GO:0007155: cell adhesion	6.03E-03
85	GO:0008610: lipid biosynthetic process	6.03E-03
86	GO:0006402: mRNA catabolic process	6.03E-03
87	GO:0009690: cytokinin metabolic process	6.03E-03
88	GO:0032544: plastid translation	6.92E-03
89	GO:0009808: lignin metabolic process	6.92E-03
90	GO:0009932: cell tip growth	6.92E-03
91	GO:0071482: cellular response to light stimulus	6.92E-03
92	GO:0010411: xyloglucan metabolic process	7.10E-03
93	GO:0006783: heme biosynthetic process	7.85E-03
94	GO:0009060: aerobic respiration	7.85E-03
95	GO:0051865: protein autoubiquitination	7.85E-03
96	GO:0045337: farnesyl diphosphate biosynthetic process	7.85E-03
97	GO:0010206: photosystem II repair	7.85E-03
98	GO:0080144: amino acid homeostasis	7.85E-03
99	GO:0033384: geranyl diphosphate biosynthetic process	7.85E-03
100	GO:0010205: photoinhibition	8.82E-03
101	GO:1900865: chloroplast RNA modification	8.82E-03
102	GO:0007568: aging	9.11E-03
103	GO:0007623: circadian rhythm	9.37E-03
104	GO:0009870: defense response signaling pathway, resistance gene-dependent	9.84E-03
105	GO:0006535: cysteine biosynthetic process from serine	9.84E-03
106	GO:0055085: transmembrane transport	9.96E-03
107	GO:0055114: oxidation-reduction process	1.06E-02
108	GO:0006352: DNA-templated transcription, initiation	1.09E-02
109	GO:0009073: aromatic amino acid family biosynthetic process	1.09E-02
110	GO:0006631: fatty acid metabolic process	1.19E-02
111	GO:0015706: nitrate transport	1.20E-02
112	GO:0010114: response to red light	1.29E-02
113	GO:0009640: photomorphogenesis	1.29E-02
114	GO:2000028: regulation of photoperiodism, flowering	1.31E-02
115	GO:0050826: response to freezing	1.31E-02
116	GO:0009718: anthocyanin-containing compound biosynthetic process	1.31E-02
117	GO:0009725: response to hormone	1.31E-02
118	GO:0030048: actin filament-based movement	1.31E-02
119	GO:0042546: cell wall biogenesis	1.34E-02
120	GO:0010207: photosystem II assembly	1.43E-02
121	GO:0010030: positive regulation of seed germination	1.55E-02
122	GO:0010167: response to nitrate	1.55E-02
123	GO:0006636: unsaturated fatty acid biosynthetic process	1.67E-02
124	GO:0019762: glucosinolate catabolic process	1.67E-02
125	GO:0019344: cysteine biosynthetic process	1.80E-02
126	GO:0006857: oligopeptide transport	1.87E-02
127	GO:0007049: cell cycle	1.88E-02
128	GO:0006418: tRNA aminoacylation for protein translation	1.93E-02
129	GO:0007017: microtubule-based process	1.93E-02
130	GO:0031408: oxylipin biosynthetic process	2.07E-02
131	GO:0048316: seed development	2.13E-02
132	GO:0080167: response to karrikin	2.14E-02
133	GO:0009626: plant-type hypersensitive response	2.20E-02
134	GO:0009814: defense response, incompatible interaction	2.21E-02
135	GO:0016226: iron-sulfur cluster assembly	2.21E-02
136	GO:2000022: regulation of jasmonic acid mediated signaling pathway	2.21E-02
137	GO:0042545: cell wall modification	2.42E-02
138	GO:0009306: protein secretion	2.49E-02
139	GO:0006284: base-excision repair	2.49E-02
140	GO:0019722: calcium-mediated signaling	2.49E-02
141	GO:0042127: regulation of cell proliferation	2.49E-02
142	GO:0009789: positive regulation of abscisic acid-activated signaling pathway	2.64E-02
143	GO:0051726: regulation of cell cycle	2.64E-02
144	GO:0000413: protein peptidyl-prolyl isomerization	2.79E-02
145	GO:0010087: phloem or xylem histogenesis	2.79E-02
146	GO:0042391: regulation of membrane potential	2.79E-02
147	GO:0010197: polar nucleus fusion	2.94E-02
148	GO:0010305: leaf vascular tissue pattern formation	2.94E-02
149	GO:0009791: post-embryonic development	3.25E-02
150	GO:0048510: regulation of timing of transition from vegetative to reproductive phase	3.42E-02
151	GO:0002229: defense response to oomycetes	3.42E-02
152	GO:0048235: pollen sperm cell differentiation	3.58E-02
153	GO:0030163: protein catabolic process	3.75E-02
154	GO:0010090: trichome morphogenesis	3.75E-02
155	GO:0009567: double fertilization forming a zygote and endosperm	3.92E-02
156	GO:0008152: metabolic process	3.93E-02
157	GO:0007267: cell-cell signaling	4.09E-02
158	GO:0071805: potassium ion transmembrane transport	4.09E-02
159	GO:0040008: regulation of growth	4.10E-02
160	GO:0042128: nitrate assimilation	4.80E-02
161	GO:0007166: cell surface receptor signaling pathway	4.89E-02

Rank	GO Term	Adjusted P value
1	GO:0047661: amino-acid racemase activity	0.00E+00
2	GO:0008756: o-succinylbenzoate-CoA ligase activity	0.00E+00
3	GO:0005048: signal sequence binding	0.00E+00
4	GO:0050614: delta24-sterol reductase activity	0.00E+00
5	GO:0005222: intracellular cAMP activated cation channel activity	0.00E+00
6	GO:0047513: 1,2-alpha-L-fucosidase activity	0.00E+00
7	GO:0080132: fatty acid alpha-hydroxylase activity	0.00E+00
8	GO:0008987: quinolinate synthetase A activity	0.00E+00
9	GO:0009979: 16:0 monogalactosyldiacylglycerol desaturase activity	0.00E+00
10	GO:0004822: isoleucine-tRNA ligase activity	0.00E+00
11	GO:0004421: hydroxymethylglutaryl-CoA synthase activity	0.00E+00
12	GO:0008807: carboxyvinyl-carboxyphosphonate phosphorylmutase activity	0.00E+00
13	GO:0019843: rRNA binding	5.83E-09
14	GO:0015250: water channel activity	4.59E-06
15	GO:0003735: structural constituent of ribosome	3.60E-05
16	GO:0009922: fatty acid elongase activity	1.13E-04
17	GO:0005221: intracellular cyclic nucleotide activated cation channel activity	3.40E-04
18	GO:0000248: C-5 sterol desaturase activity	3.40E-04
19	GO:0000170: sphingosine hydroxylase activity	3.40E-04
20	GO:0004729: oxygen-dependent protoporphyrinogen oxidase activity	3.40E-04
21	GO:0047807: cytokinin 7-beta-glucosyltransferase activity	3.40E-04
22	GO:0004655: porphobilinogen synthase activity	3.40E-04
23	GO:0080062: cytokinin 9-beta-glucosyltransferase activity	3.40E-04
24	GO:0009671: nitrate:proton symporter activity	3.40E-04
25	GO:0015200: methylammonium transmembrane transporter activity	3.40E-04
26	GO:0000156: phosphorelay response regulator activity	5.81E-04
27	GO:0016722: oxidoreductase activity, oxidizing metal ions	6.78E-04
28	GO:0016597: amino acid binding	7.31E-04
29	GO:0004805: trehalose-phosphatase activity	7.37E-04
30	GO:0003839: gamma-glutamylcyclotransferase activity	7.40E-04
31	GO:0004617: phosphoglycerate dehydrogenase activity	7.40E-04
32	GO:0008686: 3,4-dihydroxy-2-butanone-4-phosphate synthase activity	7.40E-04
33	GO:0046509: 1,2-diacylglycerol 3-beta-galactosyltransferase activity	7.40E-04
34	GO:0042284: sphingolipid delta-4 desaturase activity	7.40E-04
35	GO:0047274: galactinol-sucrose galactosyltransferase activity	1.20E-03
36	GO:0002161: aminoacyl-tRNA editing activity	1.20E-03
37	GO:0004148: dihydrolipoyl dehydrogenase activity	1.20E-03
38	GO:0003935: GTP cyclohydrolase II activity	1.20E-03
39	GO:0102337: 3-oxo-cerotoyl-CoA synthase activity	1.54E-03
40	GO:0102338: 3-oxo-lignoceronyl-CoA synthase activity	1.54E-03
41	GO:0102336: 3-oxo-arachidoyl-CoA synthase activity	1.54E-03
42	GO:0001872: (1->3)-beta-D-glucan binding	1.72E-03
43	GO:0035250: UDP-galactosyltransferase activity	1.72E-03
44	GO:0015204: urea transmembrane transporter activity	2.31E-03
45	GO:0001053: plastid sigma factor activity	2.31E-03
46	GO:0004739: pyruvate dehydrogenase (acetyl-transferring) activity	2.31E-03
47	GO:0016987: sigma factor activity	2.31E-03
48	GO:0004506: squalene monooxygenase activity	2.31E-03
49	GO:0005253: anion channel activity	2.31E-03
50	GO:0030570: pectate lyase activity	2.46E-03
51	GO:0003755: peptidyl-prolyl cis-trans isomerase activity	2.48E-03
52	GO:0008725: DNA-3-methyladenine glycosylase activity	2.96E-03
53	GO:0003959: NADPH dehydrogenase activity	2.96E-03
54	GO:0016773: phosphotransferase activity, alcohol group as acceptor	2.96E-03
55	GO:0008519: ammonium transmembrane transporter activity	3.65E-03
56	GO:0005247: voltage-gated chloride channel activity	3.65E-03
57	GO:0016208: AMP binding	3.65E-03
58	GO:0016762: xyloglucan:xyloglucosyl transferase activity	4.17E-03
59	GO:0016491: oxidoreductase activity	4.37E-03
60	GO:0004559: alpha-mannosidase activity	4.40E-03
61	GO:0005242: inward rectifier potassium channel activity	4.40E-03
62	GO:0004124: cysteine synthase activity	4.40E-03
63	GO:0005261: cation channel activity	4.40E-03
64	GO:0008312: 7S RNA binding	6.03E-03
65	GO:0016717: oxidoreductase activity, acting on paired donors, with oxidation of a pair of donors resulting in the reduction of molecular oxygen to two molecules of water	6.92E-03
66	GO:0016798: hydrolase activity, acting on glycosyl bonds	7.10E-03
67	GO:0004337: geranyltranstransferase activity	7.85E-03
68	GO:0004675: transmembrane receptor protein serine/threonine kinase activity	8.57E-03
69	GO:0004693: cyclin-dependent protein serine/threonine kinase activity	8.69E-03
70	GO:0015112: nitrate transmembrane transporter activity	8.82E-03
71	GO:0003824: catalytic activity	8.93E-03
72	GO:0008047: enzyme activator activity	9.84E-03
73	GO:0003993: acid phosphatase activity	1.05E-02
74	GO:0004553: hydrolase activity, hydrolyzing O-glycosyl compounds	1.07E-02
75	GO:0004161: dimethylallyltranstransferase activity	1.09E-02
76	GO:0000049: tRNA binding	1.20E-02
77	GO:0046983: protein dimerization activity	1.31E-02
78	GO:0031072: heat shock protein binding	1.31E-02
79	GO:0005262: calcium channel activity	1.31E-02
80	GO:0004565: beta-galactosidase activity	1.31E-02
81	GO:0003774: motor activity	1.43E-02
82	GO:0030552: cAMP binding	1.55E-02
83	GO:0030553: cGMP binding	1.55E-02
84	GO:0008146: sulfotransferase activity	1.55E-02
85	GO:0051287: NAD binding	1.57E-02
86	GO:0004672: protein kinase activity	1.57E-02
87	GO:0003899: DNA-directed 5'-3' RNA polymerase activity	1.75E-02
88	GO:0005528: FK506 binding	1.80E-02
89	GO:0005216: ion channel activity	1.93E-02
90	GO:0015079: potassium ion transmembrane transporter activity	1.93E-02
91	GO:0045330: aspartyl esterase activity	1.93E-02
92	GO:0005506: iron ion binding	2.16E-02
93	GO:0004650: polygalacturonase activity	2.27E-02
94	GO:0030599: pectinesterase activity	2.34E-02
95	GO:0008514: organic anion transmembrane transporter activity	2.49E-02
96	GO:0003756: protein disulfide isomerase activity	2.49E-02
97	GO:0005215: transporter activity	2.63E-02
98	GO:0004812: aminoacyl-tRNA ligase activity	2.64E-02
99	GO:0030551: cyclic nucleotide binding	2.79E-02
100	GO:0010181: FMN binding	3.10E-02
101	GO:0019901: protein kinase binding	3.25E-02
102	GO:0016829: lyase activity	3.37E-02
103	GO:0048038: quinone binding	3.42E-02
104	GO:0003924: GTPase activity	3.49E-02
105	GO:0005200: structural constituent of cytoskeleton	4.09E-02
106	GO:0005525: GTP binding	4.60E-02
107	GO:0008194: UDP-glycosyltransferase activity	4.79E-02
108	GO:0102483: scopolin beta-glucosidase activity	4.98E-02
109	GO:0030247: polysaccharide binding	4.98E-02

Rank	GO Term	Adjusted P value
1	GO:0044391: ribosomal subunit	0.00E+00
2	GO:0009570: chloroplast stroma	3.59E-13
3	GO:0009941: chloroplast envelope	3.12E-11
4	GO:0009507: chloroplast	8.33E-10
5	GO:0031225: anchored component of membrane	4.00E-08
6	GO:0009505: plant-type cell wall	4.25E-06
7	GO:0046658: anchored component of plasma membrane	1.38E-05
8	GO:0009506: plasmodesma	2.03E-05
9	GO:0009534: chloroplast thylakoid	4.08E-05
10	GO:0009295: nucleoid	6.49E-05
11	GO:0000312: plastid small ribosomal subunit	8.72E-05
12	GO:0042807: central vacuole	2.89E-04
13	GO:0043674: columella	3.40E-04
14	GO:0000428: DNA-directed RNA polymerase complex	3.40E-04
15	GO:0048046: apoplast	3.63E-04
16	GO:0016020: membrane	3.65E-04
17	GO:0005576: extracellular region	5.71E-04
18	GO:0080085: signal recognition particle, chloroplast targeting	7.40E-04
19	GO:0005840: ribosome	8.43E-04
20	GO:0000311: plastid large ribosomal subunit	9.69E-04
21	GO:0005886: plasma membrane	9.69E-04
22	GO:0005887: integral component of plasma membrane	1.09E-03
23	GO:0009543: chloroplast thylakoid lumen	1.18E-03
24	GO:0009509: chromoplast	1.20E-03
25	GO:0005618: cell wall	1.26E-03
26	GO:0042646: plastid nucleoid	1.72E-03
27	GO:0009535: chloroplast thylakoid membrane	1.87E-03
28	GO:0005773: vacuole	2.97E-03
29	GO:0034707: chloride channel complex	3.65E-03
30	GO:0016363: nuclear matrix	4.40E-03
31	GO:0005762: mitochondrial large ribosomal subunit	4.40E-03
32	GO:0009533: chloroplast stromal thylakoid	5.19E-03
33	GO:0005774: vacuolar membrane	5.68E-03
34	GO:0005786: signal recognition particle, endoplasmic reticulum targeting	6.92E-03
35	GO:0000326: protein storage vacuole	6.92E-03
36	GO:0045298: tubulin complex	7.85E-03
37	GO:0009705: plant-type vacuole membrane	9.37E-03
38	GO:0016459: myosin complex	9.84E-03
39	GO:0055028: cortical microtubule	9.84E-03
40	GO:0031977: thylakoid lumen	1.19E-02
41	GO:0009508: plastid chromosome	1.31E-02
42	GO:0022627: cytosolic small ribosomal subunit	1.34E-02
43	GO:0005789: endoplasmic reticulum membrane	1.69E-02
44	GO:0009654: photosystem II oxygen evolving complex	1.93E-02
45	GO:0009536: plastid	3.12E-02
46	GO:0019898: extrinsic component of membrane	3.25E-02
47	GO:0071944: cell periphery	3.75E-02
48	GO:0005778: peroxisomal membrane	4.09E-02
49	GO:0030529: intracellular ribonucleoprotein complex	4.44E-02