Gene type: Transcription factor Metabolic gene Others DE type: Up Down Slightly_up Slightly_down Mixeded Others

GO Enrichment Analysis of Co-expressed Genes with

AT3G60210

GO-BP
GO-MF
GO-CC
RankGO TermAdjusted P value
1GO:1904964: positive regulation of phytol biosynthetic process0.00E+00
2GO:0042493: response to drug0.00E+00
3GO:1905499: trichome papilla formation0.00E+00
4GO:0006437: tyrosyl-tRNA aminoacylation0.00E+00
5GO:0032194: ubiquinone biosynthetic process via 3,4-dihydroxy-5-polyprenylbenzoate0.00E+00
6GO:0006223: uracil salvage0.00E+00
7GO:0070681: glutaminyl-tRNAGln biosynthesis via transamidation0.00E+00
8GO:2000121: regulation of removal of superoxide radicals0.00E+00
9GO:0042821: pyridoxal biosynthetic process0.00E+00
10GO:0042820: vitamin B6 catabolic process0.00E+00
11GO:0070272: proton-transporting ATP synthase complex biogenesis0.00E+00
12GO:1904966: positive regulation of vitamin E biosynthetic process0.00E+00
13GO:0097164: ammonium ion metabolic process0.00E+00
14GO:0015995: chlorophyll biosynthetic process7.51E-08
15GO:0015979: photosynthesis9.55E-08
16GO:0042254: ribosome biogenesis2.12E-07
17GO:0010207: photosystem II assembly2.47E-07
18GO:0006412: translation5.40E-07
19GO:0032544: plastid translation8.10E-07
20GO:0010027: thylakoid membrane organization1.04E-06
21GO:0006633: fatty acid biosynthetic process2.71E-06
22GO:0042335: cuticle development3.62E-06
23GO:1902326: positive regulation of chlorophyll biosynthetic process1.11E-05
24GO:0009658: chloroplast organization1.84E-05
25GO:0009735: response to cytokinin2.33E-05
26GO:0006353: DNA-templated transcription, termination2.84E-05
27GO:0090391: granum assembly3.77E-05
28GO:0009765: photosynthesis, light harvesting1.40E-04
29GO:0006183: GTP biosynthetic process1.40E-04
30GO:0009828: plant-type cell wall loosening1.68E-04
31GO:0031365: N-terminal protein amino acid modification2.15E-04
32GO:0016123: xanthophyll biosynthetic process2.15E-04
33GO:0010411: xyloglucan metabolic process2.99E-04
34GO:0010190: cytochrome b6f complex assembly3.03E-04
35GO:0042372: phylloquinone biosynthetic process4.05E-04
36GO:1901259: chloroplast rRNA processing4.05E-04
37GO:0042371: vitamin K biosynthetic process5.03E-04
38GO:0043686: co-translational protein modification5.03E-04
39GO:1902458: positive regulation of stomatal opening5.03E-04
40GO:0034337: RNA folding5.03E-04
41GO:0071588: hydrogen peroxide mediated signaling pathway5.03E-04
42GO:0060627: regulation of vesicle-mediated transport5.03E-04
43GO:0009443: pyridoxal 5'-phosphate salvage5.03E-04
44GO:0010196: nonphotochemical quenching5.20E-04
45GO:0009831: plant-type cell wall modification involved in multidimensional cell growth5.26E-04
46GO:0042255: ribosome assembly6.48E-04
47GO:0042546: cell wall biogenesis8.12E-04
48GO:0006783: heme biosynthetic process9.43E-04
49GO:0080183: response to photooxidative stress1.08E-03
50GO:0009664: plant-type cell wall organization1.08E-03
51GO:0006529: asparagine biosynthetic process1.08E-03
52GO:0006729: tetrahydrobiopterin biosynthetic process1.08E-03
53GO:1903426: regulation of reactive oxygen species biosynthetic process1.08E-03
54GO:0006568: tryptophan metabolic process1.08E-03
55GO:2000123: positive regulation of stomatal complex development1.08E-03
56GO:0043039: tRNA aminoacylation1.08E-03
57GO:0042538: hyperosmotic salinity response1.08E-03
58GO:0070981: L-asparagine biosynthetic process1.08E-03
59GO:0032502: developmental process1.12E-03
60GO:0006949: syncytium formation1.29E-03
61GO:0006782: protoporphyrinogen IX biosynthetic process1.29E-03
62GO:0007267: cell-cell signaling1.41E-03
63GO:0006869: lipid transport1.53E-03
64GO:0071492: cellular response to UV-A1.77E-03
65GO:0006696: ergosterol biosynthetic process1.77E-03
66GO:0006065: UDP-glucuronate biosynthetic process1.77E-03
67GO:0046168: glycerol-3-phosphate catabolic process1.77E-03
68GO:0051604: protein maturation1.77E-03
69GO:0009826: unidimensional cell growth2.20E-03
70GO:0080158: chloroplast ribulose bisphosphate carboxylase complex biogenesis2.57E-03
71GO:0009413: response to flooding2.57E-03
72GO:0071484: cellular response to light intensity2.57E-03
73GO:0009052: pentose-phosphate shunt, non-oxidative branch2.57E-03
74GO:0009650: UV protection2.57E-03
75GO:0006241: CTP biosynthetic process2.57E-03
76GO:0006072: glycerol-3-phosphate metabolic process2.57E-03
77GO:0010731: protein glutathionylation2.57E-03
78GO:0006424: glutamyl-tRNA aminoacylation2.57E-03
79GO:0043433: negative regulation of sequence-specific DNA binding transcription factor activity2.57E-03
80GO:0046739: transport of virus in multicellular host2.57E-03
81GO:0006165: nucleoside diphosphate phosphorylation2.57E-03
82GO:0006228: UTP biosynthetic process2.57E-03
83GO:0050482: arachidonic acid secretion2.57E-03
84GO:0019344: cysteine biosynthetic process3.05E-03
85GO:0071555: cell wall organization3.14E-03
86GO:0034599: cellular response to oxidative stress3.30E-03
87GO:0010037: response to carbon dioxide3.46E-03
88GO:0015976: carbon utilization3.46E-03
89GO:0071486: cellular response to high light intensity3.46E-03
90GO:2000122: negative regulation of stomatal complex development3.46E-03
91GO:2000038: regulation of stomatal complex development3.46E-03
92GO:0006021: inositol biosynthetic process3.46E-03
93GO:0044206: UMP salvage3.46E-03
94GO:0009411: response to UV4.43E-03
95GO:0043097: pyrimidine nucleoside salvage4.44E-03
96GO:0006665: sphingolipid metabolic process4.44E-03
97GO:0010375: stomatal complex patterning4.44E-03
98GO:0034052: positive regulation of plant-type hypersensitive response4.44E-03
99GO:0032543: mitochondrial translation4.44E-03
100GO:0016120: carotene biosynthetic process4.44E-03
101GO:0010236: plastoquinone biosynthetic process4.44E-03
102GO:0045038: protein import into chloroplast thylakoid membrane4.44E-03
103GO:0045454: cell redox homeostasis4.72E-03
104GO:0019722: calcium-mediated signaling4.82E-03
105GO:0019288: isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway5.50E-03
106GO:0009117: nucleotide metabolic process5.50E-03
107GO:0006206: pyrimidine nucleobase metabolic process5.50E-03
108GO:0006014: D-ribose metabolic process5.50E-03
109GO:0046855: inositol phosphate dephosphorylation5.50E-03
110GO:0000413: protein peptidyl-prolyl isomerization5.65E-03
111GO:0010019: chloroplast-nucleus signaling pathway6.63E-03
112GO:0010555: response to mannitol6.63E-03
113GO:0009955: adaxial/abaxial pattern specification6.63E-03
114GO:0071470: cellular response to osmotic stress6.63E-03
115GO:0009612: response to mechanical stimulus6.63E-03
116GO:0009772: photosynthetic electron transport in photosystem II7.85E-03
117GO:0009645: response to low light intensity stimulus7.85E-03
118GO:0006400: tRNA modification7.85E-03
119GO:0010583: response to cyclopentenone8.06E-03
120GO:2000070: regulation of response to water deprivation9.14E-03
121GO:0006644: phospholipid metabolic process9.14E-03
122GO:0048564: photosystem I assembly9.14E-03
123GO:0009819: drought recovery9.14E-03
124GO:0009642: response to light intensity9.14E-03
125GO:0043068: positive regulation of programmed cell death9.14E-03
126GO:0017004: cytochrome complex assembly1.05E-02
127GO:0009932: cell tip growth1.05E-02
128GO:0015996: chlorophyll catabolic process1.05E-02
129GO:0007186: G-protein coupled receptor signaling pathway1.05E-02
130GO:0010497: plasmodesmata-mediated intercellular transport1.05E-02
131GO:0009245: lipid A biosynthetic process1.19E-02
132GO:0010206: photosystem II repair1.19E-02
133GO:0009627: systemic acquired resistance1.22E-02
134GO:0042128: nitrate assimilation1.22E-02
135GO:0042761: very long-chain fatty acid biosynthetic process1.34E-02
136GO:0018298: protein-chromophore linkage1.43E-02
137GO:0043069: negative regulation of programmed cell death1.50E-02
138GO:0009870: defense response signaling pathway, resistance gene-dependent1.50E-02
139GO:0006535: cysteine biosynthetic process from serine1.50E-02
140GO:0000038: very long-chain fatty acid metabolic process1.66E-02
141GO:0019684: photosynthesis, light reaction1.66E-02
142GO:0043085: positive regulation of catalytic activity1.66E-02
143GO:0006415: translational termination1.66E-02
144GO:0006790: sulfur compound metabolic process1.83E-02
145GO:0045037: protein import into chloroplast stroma1.83E-02
146GO:0050826: response to freezing2.01E-02
147GO:0009767: photosynthetic electron transport chain2.01E-02
148GO:0005975: carbohydrate metabolic process2.11E-02
149GO:0006631: fatty acid metabolic process2.17E-02
150GO:0006541: glutamine metabolic process2.18E-02
151GO:0010020: chloroplast fission2.18E-02
152GO:0007166: cell surface receptor signaling pathway2.36E-02
153GO:0046854: phosphatidylinositol phosphorylation2.37E-02
154GO:0009969: xyloglucan biosynthetic process2.37E-02
155GO:0019853: L-ascorbic acid biosynthetic process2.37E-02
156GO:0010167: response to nitrate2.37E-02
157GO:0010025: wax biosynthetic process2.56E-02
158GO:0009116: nucleoside metabolic process2.76E-02
159GO:0000027: ribosomal large subunit assembly2.76E-02
160GO:0051017: actin filament bundle assembly2.76E-02
161GO:0019953: sexual reproduction2.96E-02
162GO:0006418: tRNA aminoacylation for protein translation2.96E-02
163GO:0007017: microtubule-based process2.96E-02
164GO:0055114: oxidation-reduction process3.10E-02
165GO:0016998: cell wall macromolecule catabolic process3.16E-02
166GO:0048511: rhythmic process3.16E-02
167GO:0061077: chaperone-mediated protein folding3.16E-02
168GO:0031348: negative regulation of defense response3.38E-02
169GO:0009814: defense response, incompatible interaction3.38E-02
170GO:0006012: galactose metabolic process3.59E-02
171GO:0010091: trichome branching3.81E-02
172GO:0016117: carotenoid biosynthetic process4.04E-02
173GO:0009789: positive regulation of abscisic acid-activated signaling pathway4.04E-02
174GO:0008033: tRNA processing4.27E-02
175GO:0080022: primary root development4.27E-02
176GO:0010182: sugar mediated signaling pathway4.50E-02
177GO:0006662: glycerol ether metabolic process4.50E-02
178GO:0042752: regulation of circadian rhythm4.73E-02
179GO:0009646: response to absence of light4.73E-02
180GO:0019252: starch biosynthetic process4.97E-02
RankGO TermAdjusted P value
1GO:0046408: chlorophyll synthetase activity0.00E+00
2GO:0019146: arabinose-5-phosphate isomerase activity0.00E+00
3GO:0004318: enoyl-[acyl-carrier-protein] reductase (NADH) activity0.00E+00
4GO:0047889: ferredoxin-nitrate reductase activity0.00E+00
5GO:0033728: divinyl chlorophyllide a 8-vinyl-reductase activity0.00E+00
6GO:0047450: crotonoyl-[acyl-carrier-protein] hydratase activity0.00E+00
7GO:0050567: glutaminyl-tRNA synthase (glutamine-hydrolyzing) activity0.00E+00
8GO:0050236: pyridoxine:NADP 4-dehydrogenase activity0.00E+00
9GO:0016631: enoyl-[acyl-carrier-protein] reductase activity0.00E+00
10GO:0048307: ferredoxin-nitrite reductase activity0.00E+00
11GO:0050518: 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase activity0.00E+00
12GO:0051744: 3,8-divinyl protochlorophyllide a 8-vinyl reductase activity0.00E+00
13GO:0046428: 1,4-dihydroxy-2-naphthoate octaprenyltransferase activity0.00E+00
14GO:0050421: nitrite reductase (NO-forming) activity0.00E+00
15GO:0045435: lycopene epsilon cyclase activity0.00E+00
16GO:0004853: uroporphyrinogen decarboxylase activity0.00E+00
17GO:0019166: trans-2-enoyl-CoA reductase (NADPH) activity0.00E+00
18GO:0008756: o-succinylbenzoate-CoA ligase activity0.00E+00
19GO:0019843: rRNA binding2.25E-14
20GO:0003735: structural constituent of ribosome7.69E-09
21GO:0003755: peptidyl-prolyl cis-trans isomerase activity1.63E-05
22GO:0016851: magnesium chelatase activity8.09E-05
23GO:0016762: xyloglucan:xyloglucosyl transferase activity1.19E-04
24GO:0043495: protein anchor1.40E-04
25GO:0016168: chlorophyll binding2.51E-04
26GO:0016798: hydrolase activity, acting on glycosyl bonds2.99E-04
27GO:0005528: FK506 binding3.21E-04
28GO:0051920: peroxiredoxin activity4.05E-04
29GO:0010347: L-galactose-1-phosphate phosphatase activity5.03E-04
30GO:0004801: sedoheptulose-7-phosphate:D-glyceraldehyde-3-phosphate glyceronetransferase activity5.03E-04
31GO:0030794: (S)-coclaurine-N-methyltransferase activity5.03E-04
32GO:0004425: indole-3-glycerol-phosphate synthase activity5.03E-04
33GO:0004560: alpha-L-fucosidase activity5.03E-04
34GO:0080132: fatty acid alpha-hydroxylase activity5.03E-04
35GO:0009374: biotin binding5.03E-04
36GO:0004831: tyrosine-tRNA ligase activity5.03E-04
37GO:0004071: aspartate-ammonia ligase activity5.03E-04
38GO:0042586: peptide deformylase activity5.03E-04
39GO:0008124: 4-alpha-hydroxytetrahydrobiopterin dehydratase activity5.03E-04
40GO:0019899: enzyme binding5.20E-04
41GO:0022891: substrate-specific transmembrane transporter activity5.26E-04
42GO:0016209: antioxidant activity6.48E-04
43GO:0004066: asparagine synthase (glutamine-hydrolyzing) activity1.08E-03
44GO:0003938: IMP dehydrogenase activity1.08E-03
45GO:0052832: inositol monophosphate 3-phosphatase activity1.08E-03
46GO:0016630: protochlorophyllide reductase activity1.08E-03
47GO:0019171: 3-hydroxyacyl-[acyl-carrier-protein] dehydratase activity1.08E-03
48GO:0008934: inositol monophosphate 1-phosphatase activity1.08E-03
49GO:0052833: inositol monophosphate 4-phosphatase activity1.08E-03
50GO:0008289: lipid binding1.10E-03
51GO:0008378: galactosyltransferase activity1.71E-03
52GO:0004367: glycerol-3-phosphate dehydrogenase [NAD+] activity1.77E-03
53GO:0070402: NADPH binding1.77E-03
54GO:0003979: UDP-glucose 6-dehydrogenase activity1.77E-03
55GO:0005504: fatty acid binding1.77E-03
56GO:0004148: dihydrolipoyl dehydrogenase activity1.77E-03
57GO:0004751: ribose-5-phosphate isomerase activity1.77E-03
58GO:0045174: glutathione dehydrogenase (ascorbate) activity1.77E-03
59GO:0016788: hydrolase activity, acting on ester bonds2.43E-03
60GO:0008097: 5S rRNA binding2.57E-03
61GO:0035529: NADH pyrophosphatase activity2.57E-03
62GO:0016149: translation release factor activity, codon specific2.57E-03
63GO:0003865: 3-oxo-5-alpha-steroid 4-dehydrogenase activity2.57E-03
64GO:0004550: nucleoside diphosphate kinase activity2.57E-03
65GO:0102336: 3-oxo-arachidoyl-CoA synthase activity2.75E-03
66GO:0102337: 3-oxo-cerotoyl-CoA synthase activity2.75E-03
67GO:0102338: 3-oxo-lignoceronyl-CoA synthase activity2.75E-03
68GO:0004659: prenyltransferase activity3.46E-03
69GO:0004845: uracil phosphoribosyltransferase activity3.46E-03
70GO:0045430: chalcone isomerase activity3.46E-03
71GO:1990137: plant seed peroxidase activity3.46E-03
72GO:0052689: carboxylic ester hydrolase activity4.11E-03
73GO:0003989: acetyl-CoA carboxylase activity4.44E-03
74GO:0009922: fatty acid elongase activity4.44E-03
75GO:0003959: NADPH dehydrogenase activity4.44E-03
76GO:0004623: phospholipase A2 activity4.44E-03
77GO:0004040: amidase activity4.44E-03
78GO:0003727: single-stranded RNA binding4.82E-03
79GO:0008200: ion channel inhibitor activity5.50E-03
80GO:0080030: methyl indole-3-acetate esterase activity5.50E-03
81GO:0031177: phosphopantetheine binding5.50E-03
82GO:0016208: AMP binding5.50E-03
83GO:0004130: cytochrome-c peroxidase activity5.50E-03
84GO:0016462: pyrophosphatase activity5.50E-03
85GO:0016688: L-ascorbate peroxidase activity5.50E-03
86GO:0003690: double-stranded DNA binding6.61E-03
87GO:0004124: cysteine synthase activity6.63E-03
88GO:0051753: mannan synthase activity6.63E-03
89GO:0045156: electron transporter, transferring electrons within the cyclic electron transport pathway of photosynthesis activity6.63E-03
90GO:0004849: uridine kinase activity6.63E-03
91GO:0008441: 3'(2'),5'-bisphosphate nucleotidase activity6.63E-03
92GO:0000035: acyl binding6.63E-03
93GO:0004747: ribokinase activity6.63E-03
94GO:0008235: metalloexopeptidase activity7.85E-03
95GO:0043295: glutathione binding7.85E-03
96GO:0030674: protein binding, bridging9.14E-03
97GO:0000036: ACP phosphopantetheine attachment site binding involved in fatty acid biosynthetic process9.14E-03
98GO:0004034: aldose 1-epimerase activity9.14E-03
99GO:0004033: aldo-keto reductase (NADP) activity9.14E-03
100GO:0008865: fructokinase activity9.14E-03
101GO:0004601: peroxidase activity9.26E-03
102GO:0016722: oxidoreductase activity, oxidizing metal ions9.74E-03
103GO:0004553: hydrolase activity, hydrolyzing O-glycosyl compounds1.03E-02
104GO:0003747: translation release factor activity1.19E-02
105GO:0016627: oxidoreductase activity, acting on the CH-CH group of donors1.19E-02
106GO:0008047: enzyme activator activity1.50E-02
107GO:0016491: oxidoreductase activity1.57E-02
108GO:0004177: aminopeptidase activity1.66E-02
109GO:0008794: arsenate reductase (glutaredoxin) activity1.66E-02
110GO:0004675: transmembrane receptor protein serine/threonine kinase activity1.83E-02
111GO:0004089: carbonate dehydratase activity2.01E-02
112GO:0031072: heat shock protein binding2.01E-02
113GO:0005509: calcium ion binding2.02E-02
114GO:0051539: 4 iron, 4 sulfur cluster binding2.08E-02
115GO:0004364: glutathione transferase activity2.26E-02
116GO:0042802: identical protein binding2.70E-02
117GO:0051287: NAD binding2.85E-02
118GO:0004176: ATP-dependent peptidase activity3.16E-02
119GO:0047134: protein-disulfide reductase activity4.04E-02
120GO:0004812: aminoacyl-tRNA ligase activity4.04E-02
121GO:0004650: polygalacturonase activity4.11E-02
122GO:0003713: transcription coactivator activity4.50E-02
123GO:0015035: protein disulfide oxidoreductase activity4.63E-02
124GO:0004791: thioredoxin-disulfide reductase activity4.73E-02
125GO:0016853: isomerase activity4.73E-02
126GO:0019901: protein kinase binding4.97E-02
RankGO TermAdjusted P value
1GO:0005835: fatty acid synthase complex0.00E+00
2GO:0030956: glutamyl-tRNA(Gln) amidotransferase complex0.00E+00
3GO:0009515: granal stacked thylakoid0.00E+00
4GO:0009507: chloroplast8.49E-55
5GO:0009570: chloroplast stroma9.38E-40
6GO:0009535: chloroplast thylakoid membrane1.04E-31
7GO:0009941: chloroplast envelope1.10E-27
8GO:0009579: thylakoid1.27E-22
9GO:0009534: chloroplast thylakoid1.50E-16
10GO:0009543: chloroplast thylakoid lumen8.34E-16
11GO:0048046: apoplast2.32E-11
12GO:0031977: thylakoid lumen3.45E-11
13GO:0005840: ribosome3.59E-10
14GO:0009654: photosystem II oxygen evolving complex8.62E-07
15GO:0046658: anchored component of plasma membrane1.07E-05
16GO:0009505: plant-type cell wall1.49E-05
17GO:0005618: cell wall2.28E-05
18GO:0042651: thylakoid membrane2.46E-05
19GO:0010007: magnesium chelatase complex3.77E-05
20GO:0031225: anchored component of membrane3.82E-05
21GO:0019898: extrinsic component of membrane1.05E-04
22GO:0030095: chloroplast photosystem II2.03E-04
23GO:0005576: extracellular region3.62E-04
24GO:0009344: nitrite reductase complex [NAD(P)H]5.03E-04
25GO:0009923: fatty acid elongase complex5.03E-04
26GO:0009523: photosystem II9.44E-04
27GO:0000311: plastid large ribosomal subunit1.71E-03
28GO:0009317: acetyl-CoA carboxylase complex1.77E-03
29GO:0009528: plastid inner membrane1.77E-03
30GO:0009509: chromoplast1.77E-03
31GO:0009536: plastid1.85E-03
32GO:0009331: glycerol-3-phosphate dehydrogenase complex2.57E-03
33GO:0031969: chloroplast membrane3.44E-03
34GO:0009527: plastid outer membrane3.46E-03
35GO:0009526: plastid envelope3.46E-03
36GO:0015935: small ribosomal subunit3.71E-03
37GO:0009532: plastid stroma3.71E-03
38GO:0055035: plastid thylakoid membrane4.44E-03
39GO:0016020: membrane4.92E-03
40GO:0009533: chloroplast stromal thylakoid7.85E-03
41GO:0010319: stromule9.74E-03
42GO:0009295: nucleoid9.74E-03
43GO:0009539: photosystem II reaction center1.05E-02
44GO:0005811: lipid particle1.05E-02
45GO:0005763: mitochondrial small ribosomal subunit1.19E-02
46GO:0045298: tubulin complex1.19E-02
47GO:0009707: chloroplast outer membrane1.43E-02
48GO:0032040: small-subunit processome1.83E-02
49GO:0009508: plastid chromosome2.01E-02
50GO:0009506: plasmodesma3.10E-02
51GO:0031410: cytoplasmic vesicle3.38E-02
52GO:0015629: actin cytoskeleton3.59E-02
53GO:0016021: integral component of membrane3.84E-02
54GO:0009706: chloroplast inner membrane4.50E-02
55GO:0009522: photosystem I4.73E-02
<
Gene type



Gene DE type