Gene type: Transcription factor Metabolic gene Others DE type: Up Down Slightly_up Slightly_down Mixeded Others

GO Enrichment Analysis of Co-expressed Genes with

AT3G60130

GO-BP
GO-MF
GO-CC
RankGO TermAdjusted P value
1GO:0033231: carbohydrate export0.00E+00
2GO:1901698: response to nitrogen compound0.00E+00
3GO:2000121: regulation of removal of superoxide radicals0.00E+00
4GO:0006399: tRNA metabolic process0.00E+00
5GO:0042593: glucose homeostasis0.00E+00
6GO:0006412: translation5.84E-11
7GO:0042254: ribosome biogenesis6.68E-08
8GO:0032544: plastid translation1.04E-05
9GO:0015979: photosynthesis3.13E-05
10GO:0045454: cell redox homeostasis3.61E-05
11GO:0009735: response to cytokinin4.34E-05
12GO:0015995: chlorophyll biosynthetic process7.13E-05
13GO:0006833: water transport8.67E-05
14GO:0010444: guard mother cell differentiation2.27E-04
15GO:0034220: ion transmembrane transport2.47E-04
16GO:1902334: fructose export from vacuole to cytoplasm2.89E-04
17GO:0015755: fructose transport2.89E-04
18GO:0046520: sphingoid biosynthetic process2.89E-04
19GO:1904966: positive regulation of vitamin E biosynthetic process2.89E-04
20GO:0010442: guard cell morphogenesis2.89E-04
21GO:1904964: positive regulation of phytol biosynthetic process2.89E-04
22GO:0071588: hydrogen peroxide mediated signaling pathway2.89E-04
23GO:0009932: cell tip growth3.53E-04
24GO:0006783: heme biosynthetic process4.25E-04
25GO:0006782: protoporphyrinogen IX biosynthetic process5.88E-04
26GO:0052541: plant-type cell wall cellulose metabolic process6.34E-04
27GO:1902326: positive regulation of chlorophyll biosynthetic process6.34E-04
28GO:0060919: auxin influx6.34E-04
29GO:0006521: regulation of cellular amino acid metabolic process6.34E-04
30GO:0009750: response to fructose6.77E-04
31GO:0015706: nitrate transport7.74E-04
32GO:0010207: photosystem II assembly9.86E-04
33GO:0015714: phosphoenolpyruvate transport1.03E-03
34GO:0015840: urea transport1.03E-03
35GO:0071705: nitrogen compound transport1.03E-03
36GO:0055114: oxidation-reduction process1.05E-03
37GO:0010167: response to nitrate1.10E-03
38GO:0000027: ribosomal large subunit assembly1.35E-03
39GO:0006241: CTP biosynthetic process1.47E-03
40GO:0080170: hydrogen peroxide transmembrane transport1.47E-03
41GO:0043433: negative regulation of sequence-specific DNA binding transcription factor activity1.47E-03
42GO:0006165: nucleoside diphosphate phosphorylation1.47E-03
43GO:0006228: UTP biosynthetic process1.47E-03
44GO:0080158: chloroplast ribulose bisphosphate carboxylase complex biogenesis1.47E-03
45GO:2001141: regulation of RNA biosynthetic process1.47E-03
46GO:1902476: chloride transmembrane transport1.47E-03
47GO:0051513: regulation of monopolar cell growth1.47E-03
48GO:0071249: cellular response to nitrate1.97E-03
49GO:0006183: GTP biosynthetic process1.97E-03
50GO:2000122: negative regulation of stomatal complex development1.97E-03
51GO:0030104: water homeostasis1.97E-03
52GO:0015713: phosphoglycerate transport1.97E-03
53GO:0010037: response to carbon dioxide1.97E-03
54GO:0015976: carbon utilization1.97E-03
55GO:0070417: cellular response to cold2.30E-03
56GO:0042335: cuticle development2.48E-03
57GO:0034052: positive regulation of plant-type hypersensitive response2.52E-03
58GO:0009658: chloroplast organization2.61E-03
59GO:0009734: auxin-activated signaling pathway2.89E-03
60GO:0007035: vacuolar acidification3.11E-03
61GO:0032973: amino acid export3.11E-03
62GO:0042549: photosystem II stabilization3.11E-03
63GO:0016132: brassinosteroid biosynthetic process3.30E-03
64GO:0010583: response to cyclopentenone3.52E-03
65GO:0042372: phylloquinone biosynthetic process3.74E-03
66GO:1901259: chloroplast rRNA processing3.74E-03
67GO:0006694: steroid biosynthetic process3.74E-03
68GO:0009854: oxidative photosynthetic carbon pathway3.74E-03
69GO:0010019: chloroplast-nucleus signaling pathway3.74E-03
70GO:0000079: regulation of cyclin-dependent protein serine/threonine kinase activity3.74E-03
71GO:0009955: adaxial/abaxial pattern specification3.74E-03
72GO:0009416: response to light stimulus4.34E-03
73GO:0030497: fatty acid elongation4.41E-03
74GO:0006821: chloride transport4.41E-03
75GO:0050829: defense response to Gram-negative bacterium4.41E-03
76GO:0009610: response to symbiotic fungus4.41E-03
77GO:0009772: photosynthetic electron transport in photosystem II4.41E-03
78GO:0043090: amino acid import4.41E-03
79GO:0016126: sterol biosynthetic process4.76E-03
80GO:0010027: thylakoid membrane organization4.76E-03
81GO:0043068: positive regulation of programmed cell death5.12E-03
82GO:0042255: ribosome assembly5.12E-03
83GO:0046620: regulation of organ growth5.12E-03
84GO:0006605: protein targeting5.12E-03
85GO:0007155: cell adhesion5.12E-03
86GO:0009627: systemic acquired resistance5.32E-03
87GO:0010411: xyloglucan metabolic process5.61E-03
88GO:0071482: cellular response to light stimulus5.87E-03
89GO:0009808: lignin metabolic process5.87E-03
90GO:0055085: transmembrane transport6.58E-03
91GO:0009245: lipid A biosynthetic process6.65E-03
92GO:0080144: amino acid homeostasis6.65E-03
93GO:0045490: pectin catabolic process6.93E-03
94GO:0010205: photoinhibition7.48E-03
95GO:0006779: porphyrin-containing compound biosynthetic process7.48E-03
96GO:0034599: cellular response to oxidative stress8.24E-03
97GO:0006995: cellular response to nitrogen starvation8.33E-03
98GO:0009870: defense response signaling pathway, resistance gene-dependent8.33E-03
99GO:0006535: cysteine biosynthetic process from serine8.33E-03
100GO:0048829: root cap development8.33E-03
101GO:0006949: syncytium formation8.33E-03
102GO:0009698: phenylpropanoid metabolic process9.22E-03
103GO:0043085: positive regulation of catalytic activity9.22E-03
104GO:0006352: DNA-templated transcription, initiation9.22E-03
105GO:0048765: root hair cell differentiation9.22E-03
106GO:0030148: sphingolipid biosynthetic process9.22E-03
107GO:0010015: root morphogenesis9.22E-03
108GO:0000038: very long-chain fatty acid metabolic process9.22E-03
109GO:0006810: transport9.90E-03
110GO:0009926: auxin polar transport1.02E-02
111GO:0042546: cell wall biogenesis1.06E-02
112GO:0008643: carbohydrate transport1.10E-02
113GO:0050826: response to freezing1.11E-02
114GO:0009826: unidimensional cell growth1.15E-02
115GO:0010030: positive regulation of seed germination1.31E-02
116GO:0010053: root epidermal cell differentiation1.31E-02
117GO:0010025: wax biosynthetic process1.41E-02
118GO:0006636: unsaturated fatty acid biosynthetic process1.41E-02
119GO:0006071: glycerol metabolic process1.41E-02
120GO:0045333: cellular respiration1.52E-02
121GO:0005992: trehalose biosynthetic process1.52E-02
122GO:0006487: protein N-linked glycosylation1.52E-02
123GO:0019344: cysteine biosynthetic process1.52E-02
124GO:0080167: response to karrikin1.59E-02
125GO:0010026: trichome differentiation1.63E-02
126GO:0061077: chaperone-mediated protein folding1.75E-02
127GO:0031408: oxylipin biosynthetic process1.75E-02
128GO:0003333: amino acid transmembrane transport1.75E-02
129GO:0015992: proton transport1.75E-02
130GO:0051260: protein homooligomerization1.75E-02
131GO:0048511: rhythmic process1.75E-02
132GO:0009733: response to auxin1.80E-02
133GO:0009740: gibberellic acid mediated signaling pathway1.85E-02
134GO:0009814: defense response, incompatible interaction1.86E-02
135GO:0035428: hexose transmembrane transport1.86E-02
136GO:0042545: cell wall modification1.90E-02
137GO:0009831: plant-type cell wall modification involved in multidimensional cell growth1.98E-02
138GO:0009411: response to UV1.98E-02
139GO:0051726: regulation of cell cycle2.08E-02
140GO:0006284: base-excision repair2.10E-02
141GO:0019722: calcium-mediated signaling2.10E-02
142GO:0042127: regulation of cell proliferation2.10E-02
143GO:0009306: protein secretion2.10E-02
144GO:0000413: protein peptidyl-prolyl isomerization2.35E-02
145GO:0010087: phloem or xylem histogenesis2.35E-02
146GO:0010305: leaf vascular tissue pattern formation2.48E-02
147GO:0006662: glycerol ether metabolic process2.48E-02
148GO:0046323: glucose import2.48E-02
149GO:0042752: regulation of circadian rhythm2.61E-02
150GO:0009646: response to absence of light2.61E-02
151GO:0009749: response to glucose2.75E-02
152GO:0042744: hydrogen peroxide catabolic process2.80E-02
153GO:0071554: cell wall organization or biogenesis2.88E-02
154GO:0000302: response to reactive oxygen species2.88E-02
155GO:0032502: developmental process3.02E-02
156GO:0006633: fatty acid biosynthetic process3.09E-02
157GO:1901657: glycosyl compound metabolic process3.16E-02
158GO:0040008: regulation of growth3.24E-02
159GO:0009828: plant-type cell wall loosening3.31E-02
160GO:0009567: double fertilization forming a zygote and endosperm3.31E-02
161GO:0007623: circadian rhythm3.39E-02
162GO:0007267: cell-cell signaling3.45E-02
163GO:0009739: response to gibberellin3.79E-02
164GO:0008380: RNA splicing4.04E-02
165GO:0016311: dephosphorylation4.37E-02
166GO:0071555: cell wall organization4.41E-02
167GO:0018298: protein-chromophore linkage4.53E-02
168GO:0010311: lateral root formation4.69E-02
169GO:0000160: phosphorelay signal transduction system4.69E-02
170GO:0009834: plant-type secondary cell wall biogenesis4.85E-02
RankGO TermAdjusted P value
1GO:0033728: divinyl chlorophyllide a 8-vinyl-reductase activity0.00E+00
2GO:0016754: sinapoylglucose-malate O-sinapoyltransferase activity0.00E+00
3GO:0008887: glycerate kinase activity0.00E+00
4GO:0009979: 16:0 monogalactosyldiacylglycerol desaturase activity0.00E+00
5GO:0051744: 3,8-divinyl protochlorophyllide a 8-vinyl reductase activity0.00E+00
6GO:0008756: o-succinylbenzoate-CoA ligase activity0.00E+00
7GO:0015284: fructose uniporter activity0.00E+00
8GO:0050614: delta24-sterol reductase activity0.00E+00
9GO:0003735: structural constituent of ribosome7.12E-13
10GO:0019843: rRNA binding2.91E-12
11GO:0015250: water channel activity5.21E-05
12GO:0005528: FK506 binding1.02E-04
13GO:0051920: peroxiredoxin activity1.74E-04
14GO:0003755: peptidyl-prolyl cis-trans isomerase activity2.68E-04
15GO:0016209: antioxidant activity2.87E-04
16GO:0050567: glutaminyl-tRNA synthase (glutamine-hydrolyzing) activity2.89E-04
17GO:0015121: phosphoenolpyruvate:phosphate antiporter activity2.89E-04
18GO:0052631: sphingolipid delta-8 desaturase activity2.89E-04
19GO:0004655: porphobilinogen synthase activity2.89E-04
20GO:0009671: nitrate:proton symporter activity2.89E-04
21GO:0004853: uroporphyrinogen decarboxylase activity2.89E-04
22GO:0015200: methylammonium transmembrane transporter activity2.89E-04
23GO:0000248: C-5 sterol desaturase activity2.89E-04
24GO:0000170: sphingosine hydroxylase activity2.89E-04
25GO:0047158: sinapoylglucose-sinapoylglucose O-sinapoyltransferase activity6.34E-04
26GO:0042284: sphingolipid delta-4 desaturase activity6.34E-04
27GO:0005353: fructose transmembrane transporter activity6.34E-04
28GO:0010277: chlorophyllide a oxygenase [overall] activity1.03E-03
29GO:0004148: dihydrolipoyl dehydrogenase activity1.03E-03
30GO:0051119: sugar transmembrane transporter activity1.10E-03
31GO:0003830: beta-1,4-mannosylglycoprotein 4-beta-N-acetylglucosaminyltransferase activity1.47E-03
32GO:0004550: nucleoside diphosphate kinase activity1.47E-03
33GO:0051537: 2 iron, 2 sulfur cluster binding1.67E-03
34GO:0004045: aminoacyl-tRNA hydrolase activity1.97E-03
35GO:0016987: sigma factor activity1.97E-03
36GO:0010328: auxin influx transmembrane transporter activity1.97E-03
37GO:0004506: squalene monooxygenase activity1.97E-03
38GO:0043495: protein anchor1.97E-03
39GO:0005253: anion channel activity1.97E-03
40GO:0015204: urea transmembrane transporter activity1.97E-03
41GO:0015120: phosphoglycerate transmembrane transporter activity1.97E-03
42GO:0001053: plastid sigma factor activity1.97E-03
43GO:0009922: fatty acid elongase activity2.52E-03
44GO:0003959: NADPH dehydrogenase activity2.52E-03
45GO:0016773: phosphotransferase activity, alcohol group as acceptor2.52E-03
46GO:0004040: amidase activity2.52E-03
47GO:0016651: oxidoreductase activity, acting on NAD(P)H2.52E-03
48GO:0008725: DNA-3-methyladenine glycosylase activity2.52E-03
49GO:0004130: cytochrome-c peroxidase activity3.11E-03
50GO:0031177: phosphopantetheine binding3.11E-03
51GO:0016208: AMP binding3.11E-03
52GO:0016688: L-ascorbate peroxidase activity3.11E-03
53GO:0008519: ammonium transmembrane transporter activity3.11E-03
54GO:0005247: voltage-gated chloride channel activity3.11E-03
55GO:0048038: quinone binding3.30E-03
56GO:0016762: xyloglucan:xyloglucosyl transferase activity3.30E-03
57GO:0015035: protein disulfide oxidoreductase activity3.58E-03
58GO:0000035: acyl binding3.74E-03
59GO:0004124: cysteine synthase activity3.74E-03
60GO:0016722: oxidoreductase activity, oxidizing metal ions4.24E-03
61GO:0019899: enzyme binding4.41E-03
62GO:0016597: amino acid binding4.50E-03
63GO:0000036: ACP phosphopantetheine attachment site binding involved in fatty acid biosynthetic process5.12E-03
64GO:0016798: hydrolase activity, acting on glycosyl bonds5.61E-03
65GO:0016717: oxidoreductase activity, acting on paired donors, with oxidation of a pair of donors resulting in the reduction of molecular oxygen to two molecules of water5.87E-03
66GO:0008889: glycerophosphodiester phosphodiesterase activity6.65E-03
67GO:0004693: cyclin-dependent protein serine/threonine kinase activity6.85E-03
68GO:0009055: electron carrier activity7.30E-03
69GO:0015112: nitrate transmembrane transporter activity7.48E-03
70GO:0016491: oxidoreductase activity8.01E-03
71GO:0003993: acid phosphatase activity8.24E-03
72GO:0004805: trehalose-phosphatase activity8.33E-03
73GO:0008047: enzyme activator activity8.33E-03
74GO:0046961: proton-transporting ATPase activity, rotational mechanism9.22E-03
75GO:0008794: arsenate reductase (glutaredoxin) activity9.22E-03
76GO:0004089: carbonate dehydratase activity1.11E-02
77GO:0004601: peroxidase activity1.21E-02
78GO:0016788: hydrolase activity, acting on ester bonds1.24E-02
79GO:0102336: 3-oxo-arachidoyl-CoA synthase activity1.41E-02
80GO:0102337: 3-oxo-cerotoyl-CoA synthase activity1.41E-02
81GO:0102338: 3-oxo-lignoceronyl-CoA synthase activity1.41E-02
82GO:0015171: amino acid transmembrane transporter activity1.52E-02
83GO:0045330: aspartyl esterase activity1.52E-02
84GO:0004650: polygalacturonase activity1.79E-02
85GO:0030599: pectinesterase activity1.85E-02
86GO:0030570: pectate lyase activity1.98E-02
87GO:0022891: substrate-specific transmembrane transporter activity1.98E-02
88GO:0003727: single-stranded RNA binding2.10E-02
89GO:0008514: organic anion transmembrane transporter activity2.10E-02
90GO:0047134: protein-disulfide reductase activity2.23E-02
91GO:0004553: hydrolase activity, hydrolyzing O-glycosyl compounds2.36E-02
92GO:0005355: glucose transmembrane transporter activity2.61E-02
93GO:0004791: thioredoxin-disulfide reductase activity2.61E-02
94GO:0005507: copper ion binding2.64E-02
95GO:0019901: protein kinase binding2.75E-02
96GO:0015144: carbohydrate transmembrane transporter activity2.94E-02
97GO:0000156: phosphorelay response regulator activity3.16E-02
98GO:0016671: oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor3.16E-02
99GO:0016759: cellulose synthase activity3.31E-02
100GO:0005351: sugar:proton symporter activity3.31E-02
101GO:0016413: O-acetyltransferase activity3.60E-02
102GO:0016168: chlorophyll binding3.90E-02
103GO:0008375: acetylglucosaminyltransferase activity4.05E-02
104GO:0102483: scopolin beta-glucosidase activity4.21E-02
105GO:0015450: P-P-bond-hydrolysis-driven protein transmembrane transporter activity4.53E-02
RankGO TermAdjusted P value
1GO:0009575: chromoplast stroma0.00E+00
2GO:0044391: ribosomal subunit0.00E+00
3GO:0009507: chloroplast5.21E-26
4GO:0009570: chloroplast stroma2.33E-22
5GO:0009941: chloroplast envelope3.73E-19
6GO:0009535: chloroplast thylakoid membrane1.32E-16
7GO:0009579: thylakoid3.15E-15
8GO:0009543: chloroplast thylakoid lumen2.91E-12
9GO:0005840: ribosome4.91E-12
10GO:0009505: plant-type cell wall2.10E-10
11GO:0031977: thylakoid lumen8.27E-10
12GO:0009534: chloroplast thylakoid2.13E-09
13GO:0016020: membrane1.12E-05
14GO:0000311: plastid large ribosomal subunit4.09E-05
15GO:0048046: apoplast4.19E-05
16GO:0031225: anchored component of membrane4.33E-05
17GO:0046658: anchored component of plasma membrane6.30E-05
18GO:0009654: photosystem II oxygen evolving complex1.18E-04
19GO:0005576: extracellular region1.89E-04
20GO:0005618: cell wall2.12E-04
21GO:0042807: central vacuole2.27E-04
22GO:0009705: plant-type vacuole membrane2.43E-04
23GO:0043674: columella2.89E-04
24GO:0030956: glutamyl-tRNA(Gln) amidotransferase complex2.89E-04
25GO:0019898: extrinsic component of membrane3.32E-04
26GO:0009509: chromoplast1.03E-03
27GO:0005773: vacuole1.46E-03
28GO:0042646: plastid nucleoid1.47E-03
29GO:0042651: thylakoid membrane1.49E-03
30GO:0015935: small ribosomal subunit1.64E-03
31GO:0000220: vacuolar proton-transporting V-type ATPase, V0 domain2.52E-03
32GO:0005887: integral component of plasma membrane2.71E-03
33GO:0005774: vacuolar membrane3.09E-03
34GO:0034707: chloride channel complex3.11E-03
35GO:0016363: nuclear matrix3.74E-03
36GO:0009295: nucleoid4.24E-03
37GO:0009533: chloroplast stromal thylakoid4.41E-03
38GO:0000326: protein storage vacuole5.87E-03
39GO:0005763: mitochondrial small ribosomal subunit6.65E-03
40GO:0016021: integral component of membrane6.85E-03
41GO:0015934: large ribosomal subunit7.19E-03
42GO:0009506: plasmodesma9.40E-03
43GO:0030095: chloroplast photosystem II1.21E-02
44GO:0000312: plastid small ribosomal subunit1.21E-02
45GO:0031969: chloroplast membrane1.59E-02
46GO:0022625: cytosolic large ribosomal subunit1.69E-02
47GO:0005886: plasma membrane2.25E-02
48GO:0009523: photosystem II2.75E-02
49GO:0071944: cell periphery3.16E-02
50GO:0005778: peroxisomal membrane3.45E-02
51GO:0010319: stromule3.45E-02
52GO:0030529: intracellular ribonucleoprotein complex3.75E-02
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Gene type



Gene DE type