co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT3G59980

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0002103: endonucleolytic cleavage of tetracistronic rRNA transcript (SSU-rRNA, LSU-rRNA, 4.5S-rRNA, 5S-rRNA)	0.00E+00
2	GO:0018160: peptidyl-pyrromethane cofactor linkage	0.00E+00
3	GO:0090071: negative regulation of ribosome biogenesis	0.00E+00
4	GO:0015742: alpha-ketoglutarate transport	0.00E+00
5	GO:0051085: chaperone mediated protein folding requiring cofactor	1.81E-07
6	GO:0006568: tryptophan metabolic process	3.88E-05
7	GO:2000071: regulation of defense response by callose deposition	3.88E-05
8	GO:0006457: protein folding	4.09E-05
9	GO:0006986: response to unfolded protein	1.05E-04
10	GO:0015729: oxaloacetate transport	1.05E-04
11	GO:0015995: chlorophyll biosynthetic process	1.13E-04
12	GO:0019676: ammonia assimilation cycle	1.45E-04
13	GO:0015743: malate transport	1.45E-04
14	GO:0071423: malate transmembrane transport	1.88E-04
15	GO:0017148: negative regulation of translation	2.82E-04
16	GO:0042026: protein refolding	2.82E-04
17	GO:1901259: chloroplast rRNA processing	2.82E-04
18	GO:0009735: response to cytokinin	3.24E-04
19	GO:0009787: regulation of abscisic acid-activated signaling pathway	3.84E-04
20	GO:0009657: plastid organization	4.37E-04
21	GO:0006783: heme biosynthetic process	4.93E-04
22	GO:0006779: porphyrin-containing compound biosynthetic process	5.49E-04
23	GO:1900865: chloroplast RNA modification	5.49E-04
24	GO:0031425: chloroplast RNA processing	5.49E-04
25	GO:0045036: protein targeting to chloroplast	6.08E-04
26	GO:0006782: protoporphyrinogen IX biosynthetic process	6.08E-04
27	GO:0009682: induced systemic resistance	6.67E-04
28	GO:0010020: chloroplast fission	8.55E-04
29	GO:2000022: regulation of jasmonic acid mediated signaling pathway	1.26E-03
30	GO:0007005: mitochondrion organization	1.26E-03
31	GO:0009409: response to cold	1.27E-03
32	GO:0010118: stomatal movement	1.57E-03
33	GO:0006814: sodium ion transport	1.73E-03
34	GO:0002229: defense response to oomycetes	1.89E-03
35	GO:0009793: embryo development ending in seed dormancy	2.49E-03
36	GO:0009627: systemic acquired resistance	2.61E-03
37	GO:0008219: cell death	2.90E-03
38	GO:0006499: N-terminal protein myristoylation	3.09E-03
39	GO:0009867: jasmonic acid mediated signaling pathway	3.40E-03
40	GO:0031347: regulation of defense response	4.60E-03
41	GO:0006414: translational elongation	4.91E-03
42	GO:0009620: response to fungus	5.93E-03
43	GO:0009624: response to nematode	6.31E-03
44	GO:0042742: defense response to bacterium	6.66E-03
45	GO:0009790: embryo development	8.21E-03
46	GO:0006633: fatty acid biosynthetic process	8.64E-03
47	GO:0015979: photosynthesis	1.60E-02
48	GO:0006397: mRNA processing	1.99E-02
49	GO:0009738: abscisic acid-activated signaling pathway	2.83E-02
50	GO:0055085: transmembrane transport	3.44E-02
51	GO:0009414: response to water deprivation	4.71E-02

Rank	GO Term	Adjusted P value
1	GO:0004418: hydroxymethylbilane synthase activity	0.00E+00
2	GO:0015139: alpha-ketoglutarate transmembrane transporter activity	0.00E+00
3	GO:0051087: chaperone binding	1.50E-07
4	GO:0004425: indole-3-glycerol-phosphate synthase activity	1.48E-05
5	GO:0051082: unfolded protein binding	1.49E-05
6	GO:0004312: fatty acid synthase activity	3.88E-05
7	GO:0000774: adenyl-nucleotide exchange factor activity	3.88E-05
8	GO:0015367: oxoglutarate:malate antiporter activity	3.88E-05
9	GO:0004315: 3-oxoacyl-[acyl-carrier-protein] synthase activity	6.95E-05
10	GO:0015131: oxaloacetate transmembrane transporter activity	1.05E-04
11	GO:0016656: monodehydroascorbate reductase (NADH) activity	1.05E-04
12	GO:0043023: ribosomal large subunit binding	1.05E-04
13	GO:0016851: magnesium chelatase activity	1.05E-04
14	GO:0042803: protein homodimerization activity	1.34E-04
15	GO:0015140: malate transmembrane transporter activity	3.32E-04
16	GO:0005507: copper ion binding	5.68E-04
17	GO:0044183: protein binding involved in protein folding	6.67E-04
18	GO:0016887: ATPase activity	2.89E-03
19	GO:0015450: P-P-bond-hydrolysis-driven protein transmembrane transporter activity	2.90E-03
20	GO:0003746: translation elongation factor activity	3.40E-03
21	GO:0016747: transferase activity, transferring acyl groups other than amino-acyl groups	5.68E-03
22	GO:0016491: oxidoreductase activity	8.77E-03
23	GO:0003729: mRNA binding	9.92E-03
24	GO:0042802: identical protein binding	1.09E-02
25	GO:0004601: peroxidase activity	1.25E-02
26	GO:0050660: flavin adenine dinucleotide binding	1.39E-02
27	GO:0003924: GTPase activity	1.93E-02
28	GO:0005525: GTP binding	4.14E-02

Rank	GO Term	Adjusted P value
1	GO:0009507: chloroplast	6.18E-22
2	GO:0009570: chloroplast stroma	1.40E-19
3	GO:0009941: chloroplast envelope	9.97E-11
4	GO:0005759: mitochondrial matrix	3.10E-05
5	GO:0010007: magnesium chelatase complex	6.95E-05
6	GO:0010319: stromule	8.26E-05
7	GO:0009706: chloroplast inner membrane	4.12E-04
8	GO:0009579: thylakoid	4.56E-04
9	GO:0009536: plastid	1.13E-03
10	GO:0030529: intracellular ribonucleoprotein complex	2.42E-03
11	GO:0009707: chloroplast outer membrane	2.90E-03
12	GO:0022626: cytosolic ribosome	3.17E-03
13	GO:0009534: chloroplast thylakoid	3.99E-03
14	GO:0005623: cell	7.51E-03
15	GO:0048046: apoplast	2.44E-02
16	GO:0005739: mitochondrion	3.79E-02
17	GO:0005622: intracellular	4.37E-02
18	GO:0005840: ribosome	4.96E-02