Gene type: Transcription factor Metabolic gene Others DE type: Up Down Slightly_up Slightly_down Mixeded Others

GO Enrichment Analysis of Co-expressed Genes with

AT3G59940

GO-BP
GO-MF
GO-CC
RankGO TermAdjusted P value
1GO:1905615: positive regulation of developmental vegetative growth0.00E+00
2GO:0015936: coenzyme A metabolic process8.86E-06
3GO:1901959: positive regulation of cutin biosynthetic process2.38E-05
4GO:1904278: positive regulation of wax biosynthetic process4.33E-05
5GO:0010116: positive regulation of abscisic acid biosynthetic process6.64E-05
6GO:0006552: leucine catabolic process9.27E-05
7GO:0019287: isopentenyl diphosphate biosynthetic process, mevalonate pathway9.27E-05
8GO:0009902: chloroplast relocation9.27E-05
9GO:1902584: positive regulation of response to water deprivation9.27E-05
10GO:0045723: positive regulation of fatty acid biosynthetic process9.27E-05
11GO:1901371: regulation of leaf morphogenesis1.52E-04
12GO:0010016: shoot system morphogenesis1.85E-04
13GO:1901001: negative regulation of response to salt stress1.85E-04
14GO:0009787: regulation of abscisic acid-activated signaling pathway2.54E-04
15GO:0043562: cellular response to nitrogen levels2.91E-04
16GO:0009739: response to gibberellin4.26E-04
17GO:0010207: photosystem II assembly5.76E-04
18GO:0009887: animal organ morphogenesis5.76E-04
19GO:0009934: regulation of meristem structural organization5.76E-04
20GO:0042343: indole glucosinolate metabolic process6.20E-04
21GO:0010187: negative regulation of seed germination7.11E-04
22GO:0006289: nucleotide-excision repair7.11E-04
23GO:0008299: isoprenoid biosynthetic process7.58E-04
24GO:0098542: defense response to other organism8.05E-04
25GO:0009751: response to salicylic acid1.02E-03
26GO:0042335: cuticle development1.05E-03
27GO:0042752: regulation of circadian rhythm1.16E-03
28GO:0016126: sterol biosynthetic process1.61E-03
29GO:0042128: nitrate assimilation1.73E-03
30GO:0009416: response to light stimulus1.80E-03
31GO:0006499: N-terminal protein myristoylation2.05E-03
32GO:0007568: aging2.12E-03
33GO:0009926: auxin polar transport2.67E-03
34GO:0009744: response to sucrose2.67E-03
35GO:0009909: regulation of flower development3.49E-03
36GO:0009414: response to water deprivation3.51E-03
37GO:0006633: fatty acid biosynthetic process5.65E-03
38GO:0006413: translational initiation5.75E-03
39GO:0007623: circadian rhythm6.03E-03
40GO:0043161: proteasome-mediated ubiquitin-dependent protein catabolic process6.51E-03
41GO:0009737: response to abscisic acid7.61E-03
42GO:0009860: pollen tube growth8.59E-03
43GO:0007049: cell cycle8.81E-03
44GO:0009723: response to ethylene9.03E-03
45GO:0044550: secondary metabolite biosynthetic process1.01E-02
46GO:0009651: response to salt stress1.20E-02
47GO:0009753: response to jasmonic acid1.31E-02
48GO:0009873: ethylene-activated signaling pathway1.50E-02
49GO:0009734: auxin-activated signaling pathway1.59E-02
50GO:0009738: abscisic acid-activated signaling pathway1.83E-02
51GO:0051301: cell division1.99E-02
52GO:0045893: positive regulation of transcription, DNA-templated2.07E-02
53GO:0006511: ubiquitin-dependent protein catabolic process2.33E-02
54GO:0006355: regulation of transcription, DNA-templated3.28E-02
55GO:0009733: response to auxin3.37E-02
56GO:0006810: transport4.08E-02
57GO:0005975: carbohydrate metabolic process4.18E-02
58GO:0046686: response to cadmium ion4.26E-02
RankGO TermAdjusted P value
1GO:0004485: methylcrotonoyl-CoA carboxylase activity8.86E-06
2GO:0004420: hydroxymethylglutaryl-CoA reductase (NADPH) activity8.86E-06
3GO:0042282: hydroxymethylglutaryl-CoA reductase activity8.86E-06
4GO:0004679: AMP-activated protein kinase activity8.86E-06
5GO:0004075: biotin carboxylase activity4.33E-05
6GO:0070628: proteasome binding9.27E-05
7GO:0002020: protease binding1.21E-04
8GO:0031593: polyubiquitin binding1.52E-04
9GO:0019887: protein kinase regulator activity1.85E-04
10GO:0000976: transcription regulatory region sequence-specific DNA binding4.90E-04
11GO:0004190: aspartic-type endopeptidase activity6.20E-04
12GO:0043130: ubiquitin binding7.11E-04
13GO:0008289: lipid binding1.42E-03
14GO:0003684: damaged DNA binding1.43E-03
15GO:0008483: transaminase activity1.49E-03
16GO:0050897: cobalt ion binding2.12E-03
17GO:0003746: translation elongation factor activity2.25E-03
18GO:0050661: NADP binding2.46E-03
19GO:0008233: peptidase activity9.37E-03
20GO:0016709: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, NAD(P)H as one donor, and incorporation of one atom of oxygen1.14E-02
21GO:0000981: RNA polymerase II transcription factor activity, sequence-specific DNA binding1.16E-02
22GO:0003700: transcription factor activity, sequence-specific DNA binding1.72E-02
23GO:0019825: oxygen binding2.41E-02
24GO:0005525: GTP binding2.67E-02
25GO:0005506: iron ion binding3.07E-02
26GO:0005215: transporter activity3.33E-02
27GO:0004842: ubiquitin-protein transferase activity3.91E-02
28GO:0020037: heme binding4.30E-02
29GO:0005515: protein binding4.91E-02
RankGO TermAdjusted P value
1GO:0030660: Golgi-associated vesicle membrane9.27E-05
2GO:0071556: integral component of lumenal side of endoplasmic reticulum membrane9.27E-05
3GO:0071458: integral component of cytoplasmic side of endoplasmic reticulum membrane2.54E-04
4GO:0005765: lysosomal membrane4.48E-04
5GO:0000151: ubiquitin ligase complex1.92E-03
6GO:0019005: SCF ubiquitin ligase complex1.92E-03
7GO:0009707: chloroplast outer membrane1.92E-03
8GO:0010008: endosome membrane3.73E-03
9GO:0005623: cell4.92E-03
10GO:0005759: mitochondrial matrix5.65E-03
11GO:0009507: chloroplast1.41E-02
12GO:0022626: cytosolic ribosome1.82E-02
13GO:0005773: vacuole1.91E-02
14GO:0005783: endoplasmic reticulum2.51E-02
15GO:0005768: endosome2.88E-02
16GO:0016021: integral component of membrane2.97E-02
17GO:0005789: endoplasmic reticulum membrane4.20E-02
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Gene type



Gene DE type