co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT3G59870

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0060416: response to growth hormone	0.00E+00
2	GO:2000042: negative regulation of double-strand break repair via homologous recombination	0.00E+00
3	GO:0097164: ammonium ion metabolic process	0.00E+00
4	GO:0032544: plastid translation	1.32E-05
5	GO:0043007: maintenance of rDNA	3.37E-05
6	GO:0070981: L-asparagine biosynthetic process	8.48E-05
7	GO:0080148: negative regulation of response to water deprivation	8.48E-05
8	GO:0006529: asparagine biosynthetic process	8.48E-05
9	GO:0006568: tryptophan metabolic process	8.48E-05
10	GO:0006954: inflammatory response	1.47E-04
11	GO:0006518: peptide metabolic process	1.47E-04
12	GO:0051604: protein maturation	1.47E-04
13	GO:0010027: thylakoid membrane organization	2.81E-04
14	GO:0006021: inositol biosynthetic process	2.95E-04
15	GO:0006749: glutathione metabolic process	2.95E-04
16	GO:0006564: L-serine biosynthetic process	3.77E-04
17	GO:0016123: xanthophyll biosynthetic process	3.77E-04
18	GO:0048527: lateral root development	4.23E-04
19	GO:0019288: isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway	4.63E-04
20	GO:0046855: inositol phosphate dephosphorylation	4.63E-04
21	GO:0009854: oxidative photosynthetic carbon pathway	5.53E-04
22	GO:0009955: adaxial/abaxial pattern specification	5.53E-04
23	GO:1901259: chloroplast rRNA processing	5.53E-04
24	GO:0009690: cytokinin metabolic process	7.44E-04
25	GO:0010078: maintenance of root meristem identity	7.44E-04
26	GO:0009704: de-etiolation	7.44E-04
27	GO:0043562: cellular response to nitrogen levels	8.45E-04
28	GO:0017004: cytochrome complex assembly	8.45E-04
29	GO:0009684: indoleacetic acid biosynthetic process	1.28E-03
30	GO:0000038: very long-chain fatty acid metabolic process	1.28E-03
31	GO:0006415: translational termination	1.28E-03
32	GO:0006790: sulfur compound metabolic process	1.40E-03
33	GO:0010588: cotyledon vascular tissue pattern formation	1.52E-03
34	GO:0048467: gynoecium development	1.65E-03
35	GO:0006541: glutamine metabolic process	1.65E-03
36	GO:0019853: L-ascorbic acid biosynthetic process	1.78E-03
37	GO:0046854: phosphatidylinositol phosphorylation	1.78E-03
38	GO:0040008: regulation of growth	1.78E-03
39	GO:0016114: terpenoid biosynthetic process	2.33E-03
40	GO:0016117: carotenoid biosynthetic process	2.94E-03
41	GO:0080022: primary root development	3.09E-03
42	GO:0010087: phloem or xylem histogenesis	3.09E-03
43	GO:0042335: cuticle development	3.09E-03
44	GO:0009958: positive gravitropism	3.25E-03
45	GO:0009646: response to absence of light	3.42E-03
46	GO:0080167: response to karrikin	3.53E-03
47	GO:0048825: cotyledon development	3.59E-03
48	GO:0009851: auxin biosynthetic process	3.59E-03
49	GO:0032502: developmental process	3.93E-03
50	GO:0009407: toxin catabolic process	6.20E-03
51	GO:0009853: photorespiration	6.82E-03
52	GO:0051707: response to other organism	8.14E-03
53	GO:0008643: carbohydrate transport	8.60E-03
54	GO:0009636: response to toxic substance	8.82E-03
55	GO:0042538: hyperosmotic salinity response	9.54E-03
56	GO:0048367: shoot system development	1.15E-02
57	GO:0006633: fatty acid biosynthetic process	1.77E-02
58	GO:0006413: translational initiation	1.80E-02
59	GO:0016036: cellular response to phosphate starvation	1.80E-02
60	GO:0008380: RNA splicing	2.15E-02
61	GO:0009409: response to cold	2.53E-02
62	GO:0009658: chloroplast organization	2.58E-02
63	GO:0006412: translation	2.60E-02
64	GO:0009860: pollen tube growth	2.72E-02
65	GO:0009723: response to ethylene	2.87E-02
66	GO:0045454: cell redox homeostasis	3.42E-02
67	GO:0032259: methylation	3.85E-02
68	GO:0006281: DNA repair	3.97E-02
69	GO:0006397: mRNA processing	4.10E-02
70	GO:0009793: embryo development ending in seed dormancy	4.31E-02
71	GO:0016310: phosphorylation	4.57E-02

Rank	GO Term	Adjusted P value
1	GO:0050515: 4-(cytidine 5'-diphospho)-2-C-methyl-D-erythritol kinase activity	0.00E+00
2	GO:0008887: glycerate kinase activity	0.00E+00
3	GO:0010347: L-galactose-1-phosphate phosphatase activity	3.37E-05
4	GO:0030794: (S)-coclaurine-N-methyltransferase activity	3.37E-05
5	GO:0004425: indole-3-glycerol-phosphate synthase activity	3.37E-05
6	GO:0050567: glutaminyl-tRNA synthase (glutamine-hydrolyzing) activity	3.37E-05
7	GO:0004071: aspartate-ammonia ligase activity	3.37E-05
8	GO:0010291: carotene beta-ring hydroxylase activity	8.48E-05
9	GO:0050362: L-tryptophan:2-oxoglutarate aminotransferase activity	8.48E-05
10	GO:0004617: phosphoglycerate dehydrogenase activity	8.48E-05
11	GO:0052832: inositol monophosphate 3-phosphatase activity	8.48E-05
12	GO:0008934: inositol monophosphate 1-phosphatase activity	8.48E-05
13	GO:0052833: inositol monophosphate 4-phosphatase activity	8.48E-05
14	GO:0004066: asparagine synthase (glutamine-hydrolyzing) activity	8.48E-05
15	GO:0080097: L-tryptophan:pyruvate aminotransferase activity	8.48E-05
16	GO:0004148: dihydrolipoyl dehydrogenase activity	1.47E-04
17	GO:0016149: translation release factor activity, codon specific	2.18E-04
18	GO:0004045: aminoacyl-tRNA hydrolase activity	2.95E-04
19	GO:0016846: carbon-sulfur lyase activity	3.77E-04
20	GO:0004040: amidase activity	3.77E-04
21	GO:0008441: 3'(2'),5'-bisphosphate nucleotidase activity	5.53E-04
22	GO:0051753: mannan synthase activity	5.53E-04
23	GO:0003747: translation release factor activity	9.49E-04
24	GO:0008794: arsenate reductase (glutaredoxin) activity	1.28E-03
25	GO:0051119: sugar transmembrane transporter activity	1.78E-03
26	GO:0102337: 3-oxo-cerotoyl-CoA synthase activity	1.91E-03
27	GO:0102338: 3-oxo-lignoceronyl-CoA synthase activity	1.91E-03
28	GO:0102336: 3-oxo-arachidoyl-CoA synthase activity	1.91E-03
29	GO:0048038: quinone binding	3.76E-03
30	GO:0016597: amino acid binding	4.64E-03
31	GO:0009055: electron carrier activity	5.56E-03
32	GO:0008236: serine-type peptidase activity	5.60E-03
33	GO:0004222: metalloendopeptidase activity	6.20E-03
34	GO:0003993: acid phosphatase activity	7.04E-03
35	GO:0004364: glutathione transferase activity	7.91E-03
36	GO:0051537: 2 iron, 2 sulfur cluster binding	8.60E-03
37	GO:0051287: NAD binding	9.30E-03
38	GO:0015035: protein disulfide oxidoreductase activity	1.31E-02
39	GO:0019843: rRNA binding	1.51E-02
40	GO:0016705: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen	1.54E-02
41	GO:0003743: translation initiation factor activity	2.11E-02
42	GO:0008168: methyltransferase activity	2.51E-02
43	GO:0004601: peroxidase activity	2.58E-02
44	GO:0008233: peptidase activity	2.97E-02
45	GO:0042803: protein homodimerization activity	3.54E-02
46	GO:0004722: protein serine/threonine phosphatase activity	3.66E-02

Rank	GO Term	Adjusted P value
1	GO:0009507: chloroplast	4.43E-11
2	GO:0009535: chloroplast thylakoid membrane	2.89E-07
3	GO:0009570: chloroplast stroma	1.52E-06
4	GO:0030956: glutamyl-tRNA(Gln) amidotransferase complex	3.37E-05
5	GO:0009526: plastid envelope	2.95E-04
6	GO:0055035: plastid thylakoid membrane	3.77E-04
7	GO:0005763: mitochondrial small ribosomal subunit	9.49E-04
8	GO:0010598: NAD(P)H dehydrogenase complex (plastoquinone)	9.49E-04
9	GO:0009579: thylakoid	1.66E-03
10	GO:0030529: intracellular ribonucleoprotein complex	4.83E-03
11	GO:0009941: chloroplast envelope	5.51E-03
12	GO:0009534: chloroplast thylakoid	1.11E-02
13	GO:0009706: chloroplast inner membrane	1.28E-02
14	GO:0016021: integral component of membrane	2.16E-02
15	GO:0000139: Golgi membrane	2.53E-02
16	GO:0031969: chloroplast membrane	3.01E-02
17	GO:0005887: integral component of plasma membrane	4.94E-02