co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT3G59700

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0006987: activation of signaling protein activity involved in unfolded protein response	0.00E+00
2	GO:0036258: multivesicular body assembly	0.00E+00
3	GO:0048227: plasma membrane to endosome transport	0.00E+00
4	GO:0009991: response to extracellular stimulus	0.00E+00
5	GO:0080169: cellular response to boron-containing substance deprivation	0.00E+00
6	GO:0000169: activation of MAPK activity involved in osmosensory signaling pathway	0.00E+00
7	GO:0048194: Golgi vesicle budding	1.21E-05
8	GO:0009790: embryo development	3.42E-05
9	GO:0006468: protein phosphorylation	1.42E-04
10	GO:0006970: response to osmotic stress	1.50E-04
11	GO:0030968: endoplasmic reticulum unfolded protein response	1.62E-04
12	GO:0080136: priming of cellular response to stress	1.71E-04
13	GO:0034214: protein hexamerization	1.71E-04
14	GO:0010201: response to continuous far red light stimulus by the high-irradiance response system	1.71E-04
15	GO:0006805: xenobiotic metabolic process	1.71E-04
16	GO:0000303: response to superoxide	1.71E-04
17	GO:0006979: response to oxidative stress	2.60E-04
18	GO:0007165: signal transduction	3.86E-04
19	GO:0030010: establishment of cell polarity	3.87E-04
20	GO:1902000: homogentisate catabolic process	3.87E-04
21	GO:0010102: lateral root morphogenesis	4.24E-04
22	GO:0006470: protein dephosphorylation	5.27E-04
23	GO:0007188: adenylate cyclase-modulating G-protein coupled receptor signaling pathway	6.32E-04
24	GO:0006013: mannose metabolic process	6.32E-04
25	GO:0006556: S-adenosylmethionine biosynthetic process	6.32E-04
26	GO:0010359: regulation of anion channel activity	6.32E-04
27	GO:0061158: 3'-UTR-mediated mRNA destabilization	6.32E-04
28	GO:0006517: protein deglycosylation	6.32E-04
29	GO:0009072: aromatic amino acid family metabolic process	6.32E-04
30	GO:0031348: negative regulation of defense response	8.69E-04
31	GO:0006809: nitric oxide biosynthetic process	9.04E-04
32	GO:0072583: clathrin-dependent endocytosis	9.04E-04
33	GO:0070676: intralumenal vesicle formation	9.04E-04
34	GO:0001676: long-chain fatty acid metabolic process	9.04E-04
35	GO:0006624: vacuolar protein processing	9.04E-04
36	GO:0070301: cellular response to hydrogen peroxide	9.04E-04
37	GO:0042631: cellular response to water deprivation	1.19E-03
38	GO:2000038: regulation of stomatal complex development	1.20E-03
39	GO:0031087: deadenylation-independent decapping of nuclear-transcribed mRNA	1.20E-03
40	GO:0006878: cellular copper ion homeostasis	1.20E-03
41	GO:0060548: negative regulation of cell death	1.20E-03
42	GO:0010200: response to chitin	1.21E-03
43	GO:0006952: defense response	1.43E-03
44	GO:0030308: negative regulation of cell growth	1.52E-03
45	GO:0010193: response to ozone	1.57E-03
46	GO:0006886: intracellular protein transport	1.58E-03
47	GO:0007264: small GTPase mediated signal transduction	1.68E-03
48	GO:0019243: methylglyoxal catabolic process to D-lactate via S-lactoyl-glutathione	1.87E-03
49	GO:1902456: regulation of stomatal opening	1.87E-03
50	GO:0006751: glutathione catabolic process	1.87E-03
51	GO:0070814: hydrogen sulfide biosynthetic process	1.87E-03
52	GO:0000911: cytokinesis by cell plate formation	2.24E-03
53	GO:0010555: response to mannitol	2.24E-03
54	GO:2000037: regulation of stomatal complex patterning	2.24E-03
55	GO:2000067: regulation of root morphogenesis	2.24E-03
56	GO:0009816: defense response to bacterium, incompatible interaction	2.39E-03
57	GO:0015937: coenzyme A biosynthetic process	2.64E-03
58	GO:0009610: response to symbiotic fungus	2.64E-03
59	GO:0048573: photoperiodism, flowering	2.65E-03
60	GO:0009819: drought recovery	3.06E-03
61	GO:0006491: N-glycan processing	3.06E-03
62	GO:0043068: positive regulation of programmed cell death	3.06E-03
63	GO:0016559: peroxisome fission	3.06E-03
64	GO:0007166: cell surface receptor signaling pathway	3.14E-03
65	GO:0048527: lateral root development	3.39E-03
66	GO:0007186: G-protein coupled receptor signaling pathway	3.50E-03
67	GO:0010120: camalexin biosynthetic process	3.50E-03
68	GO:0009808: lignin metabolic process	3.50E-03
69	GO:0009880: embryonic pattern specification	3.50E-03
70	GO:0009867: jasmonic acid mediated signaling pathway	3.71E-03
71	GO:0006897: endocytosis	4.41E-03
72	GO:0006631: fatty acid metabolic process	4.41E-03
73	GO:0048268: clathrin coat assembly	4.44E-03
74	GO:0009862: systemic acquired resistance, salicylic acid mediated signaling pathway	4.44E-03
75	GO:0042761: very long-chain fatty acid biosynthetic process	4.44E-03
76	GO:2000280: regulation of root development	4.44E-03
77	GO:0008202: steroid metabolic process	4.44E-03
78	GO:0009738: abscisic acid-activated signaling pathway	4.71E-03
79	GO:0019538: protein metabolic process	4.93E-03
80	GO:0000103: sulfate assimilation	4.93E-03
81	GO:0009636: response to toxic substance	5.37E-03
82	GO:0035556: intracellular signal transduction	5.38E-03
83	GO:0010072: primary shoot apical meristem specification	5.45E-03
84	GO:0072593: reactive oxygen species metabolic process	5.45E-03
85	GO:0009750: response to fructose	5.45E-03
86	GO:0030148: sphingolipid biosynthetic process	5.45E-03
87	GO:0009723: response to ethylene	5.55E-03
88	GO:0000266: mitochondrial fission	5.98E-03
89	GO:0012501: programmed cell death	5.98E-03
90	GO:0015031: protein transport	5.99E-03
91	GO:0042538: hyperosmotic salinity response	5.99E-03
92	GO:0010229: inflorescence development	6.54E-03
93	GO:0055046: microgametogenesis	6.54E-03
94	GO:0046777: protein autophosphorylation	6.61E-03
95	GO:0051603: proteolysis involved in cellular protein catabolic process	6.66E-03
96	GO:0009887: animal organ morphogenesis	7.11E-03
97	GO:0009825: multidimensional cell growth	7.69E-03
98	GO:0010053: root epidermal cell differentiation	7.69E-03
99	GO:0009626: plant-type hypersensitive response	8.11E-03
100	GO:0034976: response to endoplasmic reticulum stress	8.30E-03
101	GO:2000377: regulation of reactive oxygen species metabolic process	8.92E-03
102	GO:0006487: protein N-linked glycosylation	8.92E-03
103	GO:0006508: proteolysis	9.42E-03
104	GO:0016575: histone deacetylation	9.56E-03
105	GO:0061077: chaperone-mediated protein folding	1.02E-02
106	GO:0048364: root development	1.05E-02
107	GO:0006730: one-carbon metabolic process	1.09E-02
108	GO:0007005: mitochondrion organization	1.09E-02
109	GO:0009693: ethylene biosynthetic process	1.16E-02
110	GO:0071215: cellular response to abscisic acid stimulus	1.16E-02
111	GO:0009561: megagametogenesis	1.23E-02
112	GO:0010091: trichome branching	1.23E-02
113	GO:0042147: retrograde transport, endosome to Golgi	1.30E-02
114	GO:0042391: regulation of membrane potential	1.37E-02
115	GO:0042742: defense response to bacterium	1.44E-02
116	GO:0071472: cellular response to salt stress	1.45E-02
117	GO:0010154: fruit development	1.45E-02
118	GO:0010197: polar nucleus fusion	1.45E-02
119	GO:0048544: recognition of pollen	1.52E-02
120	GO:0006623: protein targeting to vacuole	1.60E-02
121	GO:0010183: pollen tube guidance	1.60E-02
122	GO:0009749: response to glucose	1.60E-02
123	GO:0055072: iron ion homeostasis	1.60E-02
124	GO:0006891: intra-Golgi vesicle-mediated transport	1.68E-02
125	GO:0016032: viral process	1.76E-02
126	GO:0071281: cellular response to iron ion	1.84E-02
127	GO:0009617: response to bacterium	1.90E-02
128	GO:0010468: regulation of gene expression	1.90E-02
129	GO:0006464: cellular protein modification process	1.93E-02
130	GO:0071805: potassium ion transmembrane transport	2.01E-02
131	GO:0051607: defense response to virus	2.10E-02
132	GO:0009788: negative regulation of abscisic acid-activated signaling pathway	2.27E-02
133	GO:0009817: defense response to fungus, incompatible interaction	2.64E-02
134	GO:0048481: plant ovule development	2.64E-02
135	GO:0006499: N-terminal protein myristoylation	2.83E-02
136	GO:0009407: toxin catabolic process	2.83E-02
137	GO:0010119: regulation of stomatal movement	2.93E-02
138	GO:0009651: response to salt stress	3.16E-02
139	GO:0042542: response to hydrogen peroxide	3.64E-02
140	GO:0009744: response to sucrose	3.74E-02
141	GO:0000209: protein polyubiquitination	3.85E-02
142	GO:0009644: response to high light intensity	3.96E-02
143	GO:0042787: protein ubiquitination involved in ubiquitin-dependent protein catabolic process	4.29E-02
144	GO:0009751: response to salicylic acid	4.43E-02
145	GO:0006813: potassium ion transport	4.62E-02
146	GO:0009736: cytokinin-activated signaling pathway	4.62E-02
147	GO:0006397: mRNA processing	4.68E-02
148	GO:0010224: response to UV-B	4.74E-02

Rank	GO Term	Adjusted P value
1	GO:0033550: MAP kinase tyrosine phosphatase activity	0.00E+00
2	GO:0016034: maleylacetoacetate isomerase activity	0.00E+00
3	GO:0004572: mannosyl-oligosaccharide 1,3-1,6-alpha-mannosidase activity	0.00E+00
4	GO:0005524: ATP binding	9.81E-08
5	GO:0005515: protein binding	1.68E-06
6	GO:0102391: decanoate--CoA ligase activity	7.58E-05
7	GO:0003950: NAD+ ADP-ribosyltransferase activity	7.58E-05
8	GO:0004012: phospholipid-translocating ATPase activity	7.58E-05
9	GO:0016301: kinase activity	9.71E-05
10	GO:0004467: long-chain fatty acid-CoA ligase activity	1.01E-04
11	GO:0032050: clathrin heavy chain binding	1.71E-04
12	GO:0004713: protein tyrosine kinase activity	2.80E-04
13	GO:0045140: inositol phosphoceramide synthase activity	3.87E-04
14	GO:0047209: coniferyl-alcohol glucosyltransferase activity	3.87E-04
15	GO:0004594: pantothenate kinase activity	3.87E-04
16	GO:0015662: ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism	4.24E-04
17	GO:0004672: protein kinase activity	6.20E-04
18	GO:0031683: G-protein beta/gamma-subunit complex binding	6.32E-04
19	GO:0003840: gamma-glutamyltransferase activity	6.32E-04
20	GO:0036374: glutathione hydrolase activity	6.32E-04
21	GO:0004781: sulfate adenylyltransferase (ATP) activity	6.32E-04
22	GO:0016805: dipeptidase activity	6.32E-04
23	GO:0004478: methionine adenosyltransferase activity	6.32E-04
24	GO:0001664: G-protein coupled receptor binding	6.32E-04
25	GO:0005093: Rab GDP-dissociation inhibitor activity	6.32E-04
26	GO:0043424: protein histidine kinase binding	7.27E-04
27	GO:0004707: MAP kinase activity	7.97E-04
28	GO:0004416: hydroxyacylglutathione hydrolase activity	9.04E-04
29	GO:0016756: glutathione gamma-glutamylcysteinyltransferase activity	9.04E-04
30	GO:0004301: epoxide hydrolase activity	1.20E-03
31	GO:0005496: steroid binding	1.52E-03
32	GO:0004197: cysteine-type endopeptidase activity	1.68E-03
33	GO:0004722: protein serine/threonine phosphatase activity	1.73E-03
34	GO:0031593: polyubiquitin binding	1.87E-03
35	GO:0004559: alpha-mannosidase activity	2.24E-03
36	GO:0008113: peptide-methionine (S)-S-oxide reductase activity	2.24E-03
37	GO:0008235: metalloexopeptidase activity	2.64E-03
38	GO:0004869: cysteine-type endopeptidase inhibitor activity	3.06E-03
39	GO:0004674: protein serine/threonine kinase activity	3.06E-03
40	GO:0008142: oxysterol binding	3.50E-03
41	GO:0032041: NAD-dependent histone deacetylase activity (H3-K14 specific)	3.50E-03
42	GO:0016887: ATPase activity	4.03E-03
43	GO:0004712: protein serine/threonine/tyrosine kinase activity	4.05E-03
44	GO:0005545: 1-phosphatidylinositol binding	4.93E-03
45	GO:0004177: aminopeptidase activity	5.45E-03
46	GO:0004521: endoribonuclease activity	5.98E-03
47	GO:0004175: endopeptidase activity	7.11E-03
48	GO:0004190: aspartic-type endopeptidase activity	7.69E-03
49	GO:0030552: cAMP binding	7.69E-03
50	GO:0030553: cGMP binding	7.69E-03
51	GO:0030246: carbohydrate binding	7.77E-03
52	GO:0004871: signal transducer activity	8.09E-03
53	GO:0004725: protein tyrosine phosphatase activity	8.30E-03
54	GO:0004407: histone deacetylase activity	8.92E-03
55	GO:0043130: ubiquitin binding	8.92E-03
56	GO:0005528: FK506 binding	8.92E-03
57	GO:0005516: calmodulin binding	9.21E-03
58	GO:0005216: ion channel activity	9.56E-03
59	GO:0015079: potassium ion transmembrane transporter activity	9.56E-03
60	GO:0003924: GTPase activity	9.96E-03
61	GO:0033612: receptor serine/threonine kinase binding	1.02E-02
62	GO:0003756: protein disulfide isomerase activity	1.23E-02
63	GO:0003727: single-stranded RNA binding	1.23E-02
64	GO:0005509: calcium ion binding	1.28E-02
65	GO:0030551: cyclic nucleotide binding	1.37E-02
66	GO:0005249: voltage-gated potassium channel activity	1.37E-02
67	GO:0008565: protein transporter activity	1.38E-02
68	GO:0030276: clathrin binding	1.45E-02
69	GO:0016853: isomerase activity	1.52E-02
70	GO:0009931: calcium-dependent protein serine/threonine kinase activity	2.36E-02
71	GO:0046982: protein heterodimerization activity	2.42E-02
72	GO:0000287: magnesium ion binding	2.42E-02
73	GO:0030247: polysaccharide binding	2.45E-02
74	GO:0004683: calmodulin-dependent protein kinase activity	2.45E-02
75	GO:0043531: ADP binding	2.70E-02
76	GO:0005096: GTPase activator activity	2.73E-02
77	GO:0030145: manganese ion binding	2.93E-02
78	GO:0004364: glutathione transferase activity	3.64E-02
79	GO:0042803: protein homodimerization activity	3.82E-02
80	GO:0035091: phosphatidylinositol binding	3.96E-02
81	GO:0005198: structural molecule activity	4.06E-02
82	GO:0003755: peptidyl-prolyl cis-trans isomerase activity	4.17E-02

Rank	GO Term	Adjusted P value
1	GO:0005886: plasma membrane	6.18E-08
2	GO:0016363: nuclear matrix	7.58E-05
3	GO:0005802: trans-Golgi network	1.42E-04
4	GO:0030125: clathrin vesicle coat	2.80E-04
5	GO:0042406: extrinsic component of endoplasmic reticulum membrane	6.32E-04
6	GO:0005905: clathrin-coated pit	7.97E-04
7	GO:0000323: lytic vacuole	9.04E-04
8	GO:0016021: integral component of membrane	1.06E-03
9	GO:0030136: clathrin-coated vesicle	1.10E-03
10	GO:0005829: cytosol	1.22E-03
11	GO:0000813: ESCRT I complex	1.52E-03
12	GO:0000164: protein phosphatase type 1 complex	1.52E-03
13	GO:0030904: retromer complex	1.87E-03
14	GO:0005794: Golgi apparatus	2.23E-03
15	GO:0005783: endoplasmic reticulum	2.59E-03
16	GO:0030131: clathrin adaptor complex	3.06E-03
17	GO:0031902: late endosome membrane	4.41E-03
18	GO:0017119: Golgi transport complex	4.93E-03
19	GO:0031307: integral component of mitochondrial outer membrane	5.98E-03
20	GO:0005795: Golgi stack	7.69E-03
21	GO:0005834: heterotrimeric G-protein complex	8.11E-03
22	GO:0005773: vacuole	1.01E-02
23	GO:0005741: mitochondrial outer membrane	1.02E-02
24	GO:0005623: cell	1.18E-02
25	GO:0005768: endosome	1.23E-02
26	GO:0005778: peroxisomal membrane	2.01E-02
27	GO:0030529: intracellular ribonucleoprotein complex	2.18E-02
28	GO:0000932: P-body	2.18E-02
29	GO:0005788: endoplasmic reticulum lumen	2.27E-02
30	GO:0005789: endoplasmic reticulum membrane	2.71E-02
31	GO:0000786: nucleosome	3.02E-02
32	GO:0005774: vacuolar membrane	3.33E-02
33	GO:0005856: cytoskeleton	4.06E-02
34	GO:0005622: intracellular	4.21E-02