Gene type: Transcription factor Metabolic gene Others DE type: Up Down Slightly_up Slightly_down Mixeded Others

GO Enrichment Analysis of Co-expressed Genes with

AT3G59540

GO-BP
GO-MF
GO-CC
RankGO TermAdjusted P value
1GO:0044843: cell cycle G1/S phase transition0.00E+00
2GO:0009967: positive regulation of signal transduction0.00E+00
3GO:0006412: translation1.78E-135
4GO:0042254: ribosome biogenesis2.29E-48
5GO:0000027: ribosomal large subunit assembly2.00E-13
6GO:0071215: cellular response to abscisic acid stimulus3.42E-05
7GO:0009955: adaxial/abaxial pattern specification5.10E-05
8GO:0006407: rRNA export from nucleus1.33E-04
9GO:0000461: endonucleolytic cleavage to generate mature 3'-end of SSU-rRNA from (SSU-rRNA, 5.8S rRNA, LSU-rRNA)1.33E-04
10GO:0000447: endonucleolytic cleavage in ITS1 to separate SSU-rRNA from 5.8S rRNA and LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)1.33E-04
11GO:0048569: post-embryonic animal organ development3.07E-04
12GO:1902626: assembly of large subunit precursor of preribosome5.06E-04
13GO:0002181: cytoplasmic translation5.06E-04
14GO:0010476: gibberellin mediated signaling pathway5.06E-04
15GO:0042256: mature ribosome assembly5.06E-04
16GO:0009735: response to cytokinin5.32E-04
17GO:0042274: ribosomal small subunit biogenesis9.59E-04
18GO:0071493: cellular response to UV-B1.21E-03
19GO:0009845: seed germination1.26E-03
20GO:0045040: protein import into mitochondrial outer membrane1.49E-03
21GO:0000470: maturation of LSU-rRNA1.49E-03
22GO:0000911: cytokinesis by cell plate formation1.78E-03
23GO:0000028: ribosomal small subunit assembly2.42E-03
24GO:0001558: regulation of cell growth2.77E-03
25GO:0009409: response to cold3.64E-03
26GO:0009644: response to high light intensity3.67E-03
27GO:0009965: leaf morphogenesis3.81E-03
28GO:0010015: root morphogenesis4.30E-03
29GO:0006913: nucleocytoplasmic transport4.30E-03
30GO:0006364: rRNA processing4.56E-03
31GO:0006417: regulation of translation5.05E-03
32GO:0006626: protein targeting to mitochondrion5.15E-03
33GO:0010229: inflorescence development5.15E-03
34GO:0010102: lateral root morphogenesis5.15E-03
35GO:0006414: translational elongation5.36E-03
36GO:0048367: shoot system development5.56E-03
37GO:0030150: protein import into mitochondrial matrix7.01E-03
38GO:0051302: regulation of cell division7.51E-03
39GO:0040007: growth9.08E-03
40GO:0009793: embryo development ending in seed dormancy9.25E-03
41GO:0009749: response to glucose1.25E-02
42GO:0009791: post-embryonic development1.25E-02
43GO:0032502: developmental process1.38E-02
44GO:0010090: trichome morphogenesis1.44E-02
45GO:0008283: cell proliferation2.92E-02
46GO:0048364: root development3.33E-02
47GO:0009620: response to fungus4.36E-02
RankGO TermAdjusted P value
1GO:0005078: MAP-kinase scaffold activity0.00E+00
2GO:0003735: structural constituent of ribosome7.83E-166
3GO:0003729: mRNA binding8.21E-32
4GO:0019843: rRNA binding1.33E-11
5GO:0032947: protein complex scaffold5.06E-04
6GO:0070181: small ribosomal subunit rRNA binding5.06E-04
7GO:0008097: 5S rRNA binding7.24E-04
8GO:0008235: metalloexopeptidase activity2.09E-03
9GO:0015266: protein channel activity5.15E-03
10GO:0004871: signal transducer activity5.21E-03
11GO:0003723: RNA binding1.09E-02
12GO:0000166: nucleotide binding1.33E-02
13GO:0015450: P-P-bond-hydrolysis-driven protein transmembrane transporter activity2.06E-02
RankGO TermAdjusted P value
1GO:0022626: cytosolic ribosome8.03E-113
2GO:0005840: ribosome2.51E-103
3GO:0022625: cytosolic large ribosomal subunit6.22E-95
4GO:0022627: cytosolic small ribosomal subunit4.14E-63
5GO:0005737: cytoplasm9.68E-40
6GO:0005730: nucleolus9.81E-36
7GO:0005829: cytosol2.36E-29
8GO:0009506: plasmodesma1.29E-23
9GO:0005774: vacuolar membrane1.96E-16
10GO:0015934: large ribosomal subunit3.69E-14
11GO:0015935: small ribosomal subunit4.55E-13
12GO:0016020: membrane1.66E-12
13GO:0005618: cell wall2.24E-09
14GO:0005773: vacuole1.24E-07
15GO:0005886: plasma membrane7.88E-06
16GO:0009507: chloroplast1.09E-04
17GO:0030686: 90S preribosome1.33E-04
18GO:0005622: intracellular3.97E-04
19GO:0005742: mitochondrial outer membrane translocase complex2.77E-03
20GO:0031307: integral component of mitochondrial outer membrane4.72E-03
21GO:0005834: heterotrimeric G-protein complex5.74E-03
22GO:0030529: intracellular ribonucleoprotein complex1.71E-02
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Gene type



Gene DE type