Gene type: Transcription factor Metabolic gene Others DE type: Up Down Slightly_up Slightly_down Mixeded Others

GO Enrichment Analysis of Co-expressed Genes with

AT3G57260

GO-BP
GO-MF
GO-CC
RankGO TermAdjusted P value
1GO:0006983: ER overload response0.00E+00
2GO:1901017: negative regulation of potassium ion transmembrane transporter activity0.00E+00
3GO:0080052: response to histidine0.00E+00
4GO:0006489: dolichyl diphosphate biosynthetic process0.00E+00
5GO:0033542: fatty acid beta-oxidation, unsaturated, even number0.00E+00
6GO:0072722: response to amitrole0.00E+00
7GO:0006592: ornithine biosynthetic process0.00E+00
8GO:0071327: cellular response to trehalose stimulus0.00E+00
9GO:0042891: antibiotic transport0.00E+00
10GO:0080053: response to phenylalanine0.00E+00
11GO:0002376: immune system process0.00E+00
12GO:0017186: peptidyl-pyroglutamic acid biosynthetic process, using glutaminyl-peptide cyclotransferase0.00E+00
13GO:0010360: negative regulation of anion channel activity0.00E+00
14GO:0043201: response to leucine0.00E+00
15GO:0030149: sphingolipid catabolic process0.00E+00
16GO:1900367: positive regulation of defense response to insect0.00E+00
17GO:0009617: response to bacterium1.21E-13
18GO:0042742: defense response to bacterium6.11E-12
19GO:0034976: response to endoplasmic reticulum stress8.93E-10
20GO:0006457: protein folding5.04E-09
21GO:0010150: leaf senescence1.22E-08
22GO:0000162: tryptophan biosynthetic process6.25E-08
23GO:0009627: systemic acquired resistance1.45E-07
24GO:0009697: salicylic acid biosynthetic process9.99E-07
25GO:0009751: response to salicylic acid1.07E-06
26GO:0080151: positive regulation of salicylic acid mediated signaling pathway4.22E-06
27GO:0045454: cell redox homeostasis5.22E-06
28GO:0009626: plant-type hypersensitive response5.69E-06
29GO:0009625: response to insect9.50E-06
30GO:0010112: regulation of systemic acquired resistance1.63E-05
31GO:0052544: defense response by callose deposition in cell wall3.66E-05
32GO:0009682: induced systemic resistance3.66E-05
33GO:0080142: regulation of salicylic acid biosynthetic process6.01E-05
34GO:0002237: response to molecule of bacterial origin6.83E-05
35GO:0046283: anthocyanin-containing compound metabolic process9.49E-05
36GO:0006952: defense response1.04E-04
37GO:0009759: indole glucosinolate biosynthetic process1.37E-04
38GO:0006099: tricarboxylic acid cycle1.63E-04
39GO:0031348: negative regulation of defense response1.72E-04
40GO:0071456: cellular response to hypoxia1.72E-04
41GO:0052033: pathogen-associated molecular pattern dependent induction by symbiont of host innate immune response1.88E-04
42GO:0051707: response to other organism2.34E-04
43GO:0009610: response to symbiotic fungus2.45E-04
44GO:0009700: indole phytoalexin biosynthetic process3.04E-04
45GO:0043266: regulation of potassium ion transport3.04E-04
46GO:1902361: mitochondrial pyruvate transmembrane transport3.04E-04
47GO:0010230: alternative respiration3.04E-04
48GO:0046244: salicylic acid catabolic process3.04E-04
49GO:0010266: response to vitamin B13.04E-04
50GO:0034975: protein folding in endoplasmic reticulum3.04E-04
51GO:0043903: regulation of symbiosis, encompassing mutualism through parasitism3.04E-04
52GO:0009609: response to symbiotic bacterium3.04E-04
53GO:1901183: positive regulation of camalexin biosynthetic process3.04E-04
54GO:0006102: isocitrate metabolic process3.09E-04
55GO:0030091: protein repair3.09E-04
56GO:0010204: defense response signaling pathway, resistance gene-independent3.80E-04
57GO:0030968: endoplasmic reticulum unfolded protein response3.80E-04
58GO:0010120: camalexin biosynthetic process3.80E-04
59GO:0000302: response to reactive oxygen species3.99E-04
60GO:0046686: response to cadmium ion4.73E-04
61GO:0009753: response to jasmonic acid4.93E-04
62GO:0006979: response to oxidative stress5.14E-04
63GO:0009862: systemic acquired resistance, salicylic acid mediated signaling pathway5.40E-04
64GO:1900426: positive regulation of defense response to bacterium5.40E-04
65GO:0042939: tripeptide transport6.66E-04
66GO:0044419: interspecies interaction between organisms6.66E-04
67GO:0033512: L-lysine catabolic process to acetyl-CoA via saccharopine6.66E-04
68GO:0031349: positive regulation of defense response6.66E-04
69GO:0030003: cellular cation homeostasis6.66E-04
70GO:0010618: aerenchyma formation6.66E-04
71GO:0006101: citrate metabolic process6.66E-04
72GO:0043066: negative regulation of apoptotic process6.66E-04
73GO:0006850: mitochondrial pyruvate transport6.66E-04
74GO:0015865: purine nucleotide transport6.66E-04
75GO:0019752: carboxylic acid metabolic process6.66E-04
76GO:0009816: defense response to bacterium, incompatible interaction6.89E-04
77GO:0002230: positive regulation of defense response to virus by host1.08E-03
78GO:0055074: calcium ion homeostasis1.08E-03
79GO:0010272: response to silver ion1.08E-03
80GO:0009863: salicylic acid mediated signaling pathway1.45E-03
81GO:1902290: positive regulation of defense response to oomycetes1.55E-03
82GO:0010116: positive regulation of abscisic acid biosynthetic process1.55E-03
83GO:0002239: response to oomycetes1.55E-03
84GO:0033014: tetrapyrrole biosynthetic process1.55E-03
85GO:0043207: response to external biotic stimulus1.55E-03
86GO:0046902: regulation of mitochondrial membrane permeability1.55E-03
87GO:0009399: nitrogen fixation1.55E-03
88GO:0009414: response to water deprivation1.59E-03
89GO:0010188: response to microbial phytotoxin2.07E-03
90GO:0042938: dipeptide transport2.07E-03
91GO:0006542: glutamine biosynthetic process2.07E-03
92GO:0080037: negative regulation of cytokinin-activated signaling pathway2.07E-03
93GO:0070534: protein K63-linked ubiquitination2.07E-03
94GO:0051365: cellular response to potassium ion starvation2.07E-03
95GO:0048830: adventitious root development2.07E-03
96GO:0045088: regulation of innate immune response2.07E-03
97GO:0009306: protein secretion2.28E-03
98GO:0006097: glyoxylate cycle2.65E-03
99GO:0010225: response to UV-C2.65E-03
100GO:0000304: response to singlet oxygen2.65E-03
101GO:0034052: positive regulation of plant-type hypersensitive response2.65E-03
102GO:2000762: regulation of phenylpropanoid metabolic process2.65E-03
103GO:0000413: protein peptidyl-prolyl isomerization2.67E-03
104GO:0006520: cellular amino acid metabolic process2.88E-03
105GO:0055114: oxidation-reduction process2.89E-03
106GO:0009737: response to abscisic acid3.09E-03
107GO:0002238: response to molecule of fungal origin3.27E-03
108GO:0006014: D-ribose metabolic process3.27E-03
109GO:0010942: positive regulation of cell death3.27E-03
110GO:0006301: postreplication repair3.27E-03
111GO:0009651: response to salt stress3.45E-03
112GO:0006120: mitochondrial electron transport, NADH to ubiquinone3.93E-03
113GO:0010555: response to mannitol3.93E-03
114GO:0010310: regulation of hydrogen peroxide metabolic process3.93E-03
115GO:0042372: phylloquinone biosynthetic process3.93E-03
116GO:0010200: response to chitin4.27E-03
117GO:1902074: response to salt4.64E-03
118GO:1900057: positive regulation of leaf senescence4.64E-03
119GO:0043068: positive regulation of programmed cell death5.39E-03
120GO:0030162: regulation of proteolysis5.39E-03
121GO:2000070: regulation of response to water deprivation5.39E-03
122GO:0055075: potassium ion homeostasis5.39E-03
123GO:0009787: regulation of abscisic acid-activated signaling pathway5.39E-03
124GO:0018401: peptidyl-proline hydroxylation to 4-hydroxy-L-proline5.39E-03
125GO:0009819: drought recovery5.39E-03
126GO:0006526: arginine biosynthetic process6.18E-03
127GO:0009808: lignin metabolic process6.18E-03
128GO:2000031: regulation of salicylic acid mediated signaling pathway6.18E-03
129GO:0009699: phenylpropanoid biosynthetic process6.18E-03
130GO:0006075: (1->3)-beta-D-glucan biosynthetic process6.18E-03
131GO:0008219: cell death6.69E-03
132GO:0050832: defense response to fungus6.76E-03
133GO:0006783: heme biosynthetic process7.01E-03
134GO:0015780: nucleotide-sugar transport7.01E-03
135GO:0051865: protein autoubiquitination7.01E-03
136GO:0010043: response to zinc ion7.74E-03
137GO:0010205: photoinhibition7.87E-03
138GO:0043067: regulation of programmed cell death7.87E-03
139GO:0045087: innate immune response8.49E-03
140GO:0006032: chitin catabolic process8.77E-03
141GO:0043069: negative regulation of programmed cell death8.77E-03
142GO:0009641: shade avoidance8.77E-03
143GO:0000272: polysaccharide catabolic process9.71E-03
144GO:0009684: indoleacetic acid biosynthetic process9.71E-03
145GO:0000038: very long-chain fatty acid metabolic process9.71E-03
146GO:0006816: calcium ion transport9.71E-03
147GO:0009089: lysine biosynthetic process via diaminopimelate9.71E-03
148GO:0009409: response to cold9.76E-03
149GO:0042542: response to hydrogen peroxide1.05E-02
150GO:0002213: defense response to insect1.07E-02
151GO:0010105: negative regulation of ethylene-activated signaling pathway1.07E-02
152GO:0006790: sulfur compound metabolic process1.07E-02
153GO:0012501: programmed cell death1.07E-02
154GO:0018107: peptidyl-threonine phosphorylation1.17E-02
155GO:0010075: regulation of meristem growth1.17E-02
156GO:0006468: protein phosphorylation1.24E-02
157GO:0009934: regulation of meristem structural organization1.27E-02
158GO:0006541: glutamine metabolic process1.27E-02
159GO:0007034: vacuolar transport1.27E-02
160GO:0031347: regulation of defense response1.33E-02
161GO:0010039: response to iron ion1.38E-02
162GO:0090351: seedling development1.38E-02
163GO:0046854: phosphatidylinositol phosphorylation1.38E-02
164GO:0010053: root epidermal cell differentiation1.38E-02
165GO:0009846: pollen germination1.38E-02
166GO:0009969: xyloglucan biosynthetic process1.38E-02
167GO:0006486: protein glycosylation1.48E-02
168GO:0009723: response to ethylene1.60E-02
169GO:2000377: regulation of reactive oxygen species metabolic process1.60E-02
170GO:0006487: protein N-linked glycosylation1.60E-02
171GO:0080147: root hair cell development1.60E-02
172GO:0006874: cellular calcium ion homeostasis1.72E-02
173GO:0009695: jasmonic acid biosynthetic process1.72E-02
174GO:0016998: cell wall macromolecule catabolic process1.84E-02
175GO:0031408: oxylipin biosynthetic process1.84E-02
176GO:0006508: proteolysis1.87E-02
177GO:0009620: response to fungus1.93E-02
178GO:0030433: ubiquitin-dependent ERAD pathway1.96E-02
179GO:0019748: secondary metabolic process1.96E-02
180GO:2000022: regulation of jasmonic acid mediated signaling pathway1.96E-02
181GO:0009553: embryo sac development2.05E-02
182GO:0009411: response to UV2.09E-02
183GO:0006012: galactose metabolic process2.09E-02
184GO:0010584: pollen exine formation2.22E-02
185GO:0010118: stomatal movement2.48E-02
186GO:0042631: cellular response to water deprivation2.48E-02
187GO:0006662: glycerol ether metabolic process2.62E-02
188GO:0010197: polar nucleus fusion2.62E-02
189GO:0048868: pollen tube development2.62E-02
190GO:0008360: regulation of cell shape2.62E-02
191GO:0016042: lipid catabolic process2.75E-02
192GO:0009646: response to absence of light2.76E-02
193GO:0006629: lipid metabolic process2.85E-02
194GO:0009408: response to heat2.85E-02
195GO:0019252: starch biosynthetic process2.90E-02
196GO:0009851: auxin biosynthetic process2.90E-02
197GO:0002229: defense response to oomycetes3.04E-02
198GO:0010193: response to ozone3.04E-02
199GO:0009790: embryo development3.09E-02
200GO:0009630: gravitropism3.19E-02
201GO:0016032: viral process3.19E-02
202GO:0030163: protein catabolic process3.33E-02
203GO:0006464: cellular protein modification process3.49E-02
204GO:0009567: double fertilization forming a zygote and endosperm3.49E-02
205GO:0040008: regulation of growth3.49E-02
206GO:0009615: response to virus3.95E-02
207GO:0001666: response to hypoxia3.95E-02
208GO:0043161: proteasome-mediated ubiquitin-dependent protein catabolic process4.08E-02
209GO:0009607: response to biotic stimulus4.11E-02
210GO:0007166: cell surface receptor signaling pathway4.17E-02
211GO:0006470: protein dephosphorylation4.17E-02
212GO:0042128: nitrate assimilation4.27E-02
213GO:0015995: chlorophyll biosynthetic process4.44E-02
214GO:0006950: response to stress4.44E-02
215GO:0016311: dephosphorylation4.60E-02
216GO:0009817: defense response to fungus, incompatible interaction4.77E-02
RankGO TermAdjusted P value
1GO:0016312: inositol bisphosphate phosphatase activity0.00E+00
2GO:0010298: dihydrocamalexic acid decarboxylase activity0.00E+00
3GO:0003980: UDP-glucose:glycoprotein glucosyltransferase activity0.00E+00
4GO:0008777: acetylornithine deacetylase activity0.00E+00
5GO:0016603: glutaminyl-peptide cyclotransferase activity0.00E+00
6GO:0050269: coniferyl-aldehyde dehydrogenase activity0.00E+00
7GO:0008117: sphinganine-1-phosphate aldolase activity0.00E+00
8GO:0047720: indoleacetaldoxime dehydratase activity0.00E+00
9GO:0003756: protein disulfide isomerase activity6.46E-09
10GO:0033743: peptide-methionine (R)-S-oxide reductase activity1.88E-04
11GO:0016301: kinase activity2.40E-04
12GO:0008320: protein transmembrane transporter activity2.45E-04
13GO:0008909: isochorismate synthase activity3.04E-04
14GO:0080023: 3R-hydroxyacyl-CoA dehydratase activity3.04E-04
15GO:0004325: ferrochelatase activity3.04E-04
16GO:0010285: L,L-diaminopimelate aminotransferase activity3.04E-04
17GO:0015165: pyrimidine nucleotide-sugar transmembrane transporter activity3.04E-04
18GO:0004149: dihydrolipoyllysine-residue succinyltransferase activity3.04E-04
19GO:0004425: indole-3-glycerol-phosphate synthase activity3.04E-04
20GO:0033984: indole-3-glycerol-phosphate lyase activity3.04E-04
21GO:0003975: UDP-N-acetylglucosamine-dolichyl-phosphate N-acetylglucosaminephosphotransferase activity3.04E-04
22GO:0004591: oxoglutarate dehydrogenase (succinyl-transferring) activity3.04E-04
23GO:0004048: anthranilate phosphoribosyltransferase activity3.04E-04
24GO:0004321: fatty-acyl-CoA synthase activity3.04E-04
25GO:0051082: unfolded protein binding6.58E-04
26GO:0042937: tripeptide transporter activity6.66E-04
27GO:0008963: phospho-N-acetylmuramoyl-pentapeptide-transferase activity6.66E-04
28GO:0004566: beta-glucuronidase activity6.66E-04
29GO:0003994: aconitate hydratase activity6.66E-04
30GO:0015035: protein disulfide oxidoreductase activity6.88E-04
31GO:0050833: pyruvate transmembrane transporter activity1.08E-03
32GO:0004049: anthranilate synthase activity1.08E-03
33GO:0000030: mannosyltransferase activity1.08E-03
34GO:0008430: selenium binding1.08E-03
35GO:0004838: L-tyrosine:2-oxoglutarate aminotransferase activity1.08E-03
36GO:0004441: inositol-1,4-bisphosphate 1-phosphatase activity1.08E-03
37GO:0004190: aspartic-type endopeptidase activity1.18E-03
38GO:0004674: protein serine/threonine kinase activity1.46E-03
39GO:0005460: UDP-glucose transmembrane transporter activity1.55E-03
40GO:0016656: monodehydroascorbate reductase (NADH) activity1.55E-03
41GO:0004449: isocitrate dehydrogenase (NAD+) activity1.55E-03
42GO:0035529: NADH pyrophosphatase activity1.55E-03
43GO:0004834: tryptophan synthase activity2.07E-03
44GO:0042936: dipeptide transporter activity2.07E-03
45GO:0016298: lipase activity2.53E-03
46GO:0005496: steroid binding2.65E-03
47GO:0047631: ADP-ribose diphosphatase activity2.65E-03
48GO:0005471: ATP:ADP antiporter activity2.65E-03
49GO:0004356: glutamate-ammonia ligase activity2.65E-03
50GO:0005459: UDP-galactose transmembrane transporter activity2.65E-03
51GO:0016853: isomerase activity3.09E-03
52GO:0030976: thiamine pyrophosphate binding3.27E-03
53GO:0000210: NAD+ diphosphatase activity3.27E-03
54GO:0004029: aldehyde dehydrogenase (NAD) activity3.27E-03
55GO:0004747: ribokinase activity3.93E-03
56GO:0005261: cation channel activity3.93E-03
57GO:0004656: procollagen-proline 4-dioxygenase activity3.93E-03
58GO:0008113: peptide-methionine (S)-S-oxide reductase activity3.93E-03
59GO:0051920: peroxiredoxin activity3.93E-03
60GO:0008441: 3'(2'),5'-bisphosphate nucleotidase activity3.93E-03
61GO:0016671: oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor4.04E-03
62GO:0008483: transaminase activity4.56E-03
63GO:0005509: calcium ion binding4.61E-03
64GO:0016831: carboxy-lyase activity4.64E-03
65GO:0008865: fructokinase activity5.39E-03
66GO:0016209: antioxidant activity5.39E-03
67GO:0004034: aldose 1-epimerase activity5.39E-03
68GO:0030170: pyridoxal phosphate binding5.77E-03
69GO:0016709: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, NAD(P)H as one donor, and incorporation of one atom of oxygen6.00E-03
70GO:0004806: triglyceride lipase activity6.04E-03
71GO:0003843: 1,3-beta-D-glucan synthase activity6.18E-03
72GO:0008757: S-adenosylmethionine-dependent methyltransferase activity6.36E-03
73GO:0071949: FAD binding7.01E-03
74GO:0016207: 4-coumarate-CoA ligase activity7.01E-03
75GO:0030955: potassium ion binding7.87E-03
76GO:0004028: 3-chloroallyl aldehyde dehydrogenase activity7.87E-03
77GO:0004743: pyruvate kinase activity7.87E-03
78GO:0016706: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors8.49E-03
79GO:0004568: chitinase activity8.77E-03
80GO:0051539: 4 iron, 4 sulfur cluster binding9.68E-03
81GO:0008794: arsenate reductase (glutaredoxin) activity9.71E-03
82GO:0043565: sequence-specific DNA binding9.98E-03
83GO:0004022: alcohol dehydrogenase (NAD) activity1.17E-02
84GO:0005262: calcium channel activity1.17E-02
85GO:0003755: peptidyl-prolyl cis-trans isomerase activity1.28E-02
86GO:0004970: ionotropic glutamate receptor activity1.38E-02
87GO:0005217: intracellular ligand-gated ion channel activity1.38E-02
88GO:0008061: chitin binding1.38E-02
89GO:0005524: ATP binding1.50E-02
90GO:0031625: ubiquitin protein ligase binding1.64E-02
91GO:0008233: peptidase activity1.71E-02
92GO:0004298: threonine-type endopeptidase activity1.84E-02
93GO:0052689: carboxylic ester hydrolase activity1.98E-02
94GO:0016746: transferase activity, transferring acyl groups2.18E-02
95GO:0047134: protein-disulfide reductase activity2.35E-02
96GO:0030246: carbohydrate binding2.71E-02
97GO:0004791: thioredoxin-disulfide reductase activity2.76E-02
98GO:0005507: copper ion binding2.95E-02
99GO:0019825: oxygen binding2.95E-02
100GO:0048038: quinone binding3.04E-02
101GO:0008137: NADH dehydrogenase (ubiquinone) activity3.04E-02
102GO:0004675: transmembrane receptor protein serine/threonine kinase activity3.40E-02
103GO:0020037: heme binding3.61E-02
104GO:0008237: metallopeptidase activity3.64E-02
105GO:0051213: dioxygenase activity3.95E-02
106GO:0030247: polysaccharide binding4.44E-02
107GO:0004683: calmodulin-dependent protein kinase activity4.44E-02
108GO:0015450: P-P-bond-hydrolysis-driven protein transmembrane transporter activity4.77E-02
109GO:0005506: iron ion binding4.79E-02
110GO:0015238: drug transmembrane transporter activity4.94E-02
RankGO TermAdjusted P value
1GO:0000327: lytic vacuole within protein storage vacuole0.00E+00
2GO:0005783: endoplasmic reticulum2.02E-17
3GO:0005788: endoplasmic reticulum lumen2.56E-14
4GO:0005886: plasma membrane4.22E-07
5GO:0005789: endoplasmic reticulum membrane7.63E-07
6GO:0030134: ER to Golgi transport vesicle4.22E-06
7GO:0009507: chloroplast2.30E-04
8GO:0009505: plant-type cell wall2.58E-04
9GO:0016021: integral component of membrane2.80E-04
10GO:0045252: oxoglutarate dehydrogenase complex3.04E-04
11GO:0005901: caveola6.66E-04
12GO:0005765: lysosomal membrane7.28E-04
13GO:0005774: vacuolar membrane1.40E-03
14GO:0005775: vacuolar lumen1.55E-03
15GO:0030660: Golgi-associated vesicle membrane2.07E-03
16GO:0071556: integral component of lumenal side of endoplasmic reticulum membrane2.07E-03
17GO:0031372: UBC13-MMS2 complex2.07E-03
18GO:0009898: cytoplasmic side of plasma membrane2.07E-03
19GO:0016020: membrane2.14E-03
20GO:0016592: mediator complex3.79E-03
21GO:0005801: cis-Golgi network3.93E-03
22GO:0031305: integral component of mitochondrial inner membrane5.39E-03
23GO:0045273: respiratory chain complex II5.39E-03
24GO:0005749: mitochondrial respiratory chain complex II, succinate dehydrogenase complex (ubiquinone)5.39E-03
25GO:0071458: integral component of cytoplasmic side of endoplasmic reticulum membrane5.39E-03
26GO:0000148: 1,3-beta-D-glucan synthase complex6.18E-03
27GO:0000326: protein storage vacuole6.18E-03
28GO:0019773: proteasome core complex, alpha-subunit complex6.18E-03
29GO:0005740: mitochondrial envelope8.77E-03
30GO:0005829: cytosol1.10E-02
31GO:0031012: extracellular matrix1.17E-02
32GO:0005618: cell wall1.32E-02
33GO:0030176: integral component of endoplasmic reticulum membrane1.38E-02
34GO:0031969: chloroplast membrane1.75E-02
35GO:0005741: mitochondrial outer membrane1.84E-02
36GO:0005839: proteasome core complex1.84E-02
37GO:0009536: plastid2.38E-02
38GO:0048046: apoplast2.65E-02
39GO:0009504: cell plate2.90E-02
40GO:0032580: Golgi cisterna membrane3.49E-02
41GO:0005576: extracellular region3.71E-02
42GO:0009506: plasmodesma4.77E-02
43GO:0019005: SCF ubiquitin ligase complex4.77E-02
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Gene type



Gene DE type