GO Enrichment Analysis of Co-expressed Genes with
AT3G56950
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0006069: ethanol oxidation | 0.00E+00 |
| 2 | GO:0006725: cellular aromatic compound metabolic process | 0.00E+00 |
| 3 | GO:0033539: fatty acid beta-oxidation using acyl-CoA dehydrogenase | 0.00E+00 |
| 4 | GO:0031990: mRNA export from nucleus in response to heat stress | 0.00E+00 |
| 5 | GO:0032780: negative regulation of ATPase activity | 0.00E+00 |
| 6 | GO:0006482: protein demethylation | 0.00E+00 |
| 7 | GO:0046292: formaldehyde metabolic process | 0.00E+00 |
| 8 | GO:0006144: purine nucleobase metabolic process | 7.90E-05 |
| 9 | GO:0048455: stamen formation | 7.90E-05 |
| 10 | GO:0019628: urate catabolic process | 7.90E-05 |
| 11 | GO:0080173: male-female gamete recognition during double fertilization | 7.90E-05 |
| 12 | GO:0010184: cytokinin transport | 7.90E-05 |
| 13 | GO:0034402: recruitment of 3'-end processing factors to RNA polymerase II holoenzyme complex | 7.90E-05 |
| 14 | GO:0080026: response to indolebutyric acid | 1.89E-04 |
| 15 | GO:0045948: positive regulation of translational initiation | 1.89E-04 |
| 16 | GO:0007051: spindle organization | 1.89E-04 |
| 17 | GO:0006597: spermine biosynthetic process | 1.89E-04 |
| 18 | GO:1905182: positive regulation of urease activity | 1.89E-04 |
| 19 | GO:0051262: protein tetramerization | 1.89E-04 |
| 20 | GO:0019521: D-gluconate metabolic process | 1.89E-04 |
| 21 | GO:0051788: response to misfolded protein | 1.89E-04 |
| 22 | GO:1900055: regulation of leaf senescence | 3.17E-04 |
| 23 | GO:0010476: gibberellin mediated signaling pathway | 3.17E-04 |
| 24 | GO:0010325: raffinose family oligosaccharide biosynthetic process | 3.17E-04 |
| 25 | GO:0000288: nuclear-transcribed mRNA catabolic process, deadenylation-dependent decay | 3.17E-04 |
| 26 | GO:0010498: proteasomal protein catabolic process | 3.17E-04 |
| 27 | GO:0010255: glucose mediated signaling pathway | 4.58E-04 |
| 28 | GO:0080024: indolebutyric acid metabolic process | 4.58E-04 |
| 29 | GO:0006882: cellular zinc ion homeostasis | 4.58E-04 |
| 30 | GO:0006624: vacuolar protein processing | 4.58E-04 |
| 31 | GO:0072334: UDP-galactose transmembrane transport | 4.58E-04 |
| 32 | GO:0015846: polyamine transport | 6.09E-04 |
| 33 | GO:0010222: stem vascular tissue pattern formation | 6.09E-04 |
| 34 | GO:0009939: positive regulation of gibberellic acid mediated signaling pathway | 6.09E-04 |
| 35 | GO:1902584: positive regulation of response to water deprivation | 6.09E-04 |
| 36 | GO:0010150: leaf senescence | 7.13E-04 |
| 37 | GO:0006090: pyruvate metabolic process | 7.72E-04 |
| 38 | GO:0006564: L-serine biosynthetic process | 7.72E-04 |
| 39 | GO:0006405: RNA export from nucleus | 7.72E-04 |
| 40 | GO:0045927: positive regulation of growth | 7.72E-04 |
| 41 | GO:0035435: phosphate ion transmembrane transport | 9.42E-04 |
| 42 | GO:0000060: protein import into nucleus, translocation | 9.42E-04 |
| 43 | GO:0006796: phosphate-containing compound metabolic process | 9.42E-04 |
| 44 | GO:0006596: polyamine biosynthetic process | 9.42E-04 |
| 45 | GO:0045899: positive regulation of RNA polymerase II transcriptional preinitiation complex assembly | 9.42E-04 |
| 46 | GO:0006388: tRNA splicing, via endonucleolytic cleavage and ligation | 9.42E-04 |
| 47 | GO:0043248: proteasome assembly | 9.42E-04 |
| 48 | GO:0055114: oxidation-reduction process | 1.03E-03 |
| 49 | GO:0048767: root hair elongation | 1.11E-03 |
| 50 | GO:0009082: branched-chain amino acid biosynthetic process | 1.12E-03 |
| 51 | GO:0009099: valine biosynthetic process | 1.12E-03 |
| 52 | GO:0010189: vitamin E biosynthetic process | 1.12E-03 |
| 53 | GO:0048444: floral organ morphogenesis | 1.12E-03 |
| 54 | GO:0015977: carbon fixation | 1.12E-03 |
| 55 | GO:0034389: lipid particle organization | 1.12E-03 |
| 56 | GO:0000082: G1/S transition of mitotic cell cycle | 1.31E-03 |
| 57 | GO:0006122: mitochondrial electron transport, ubiquinol to cytochrome c | 1.31E-03 |
| 58 | GO:0048528: post-embryonic root development | 1.31E-03 |
| 59 | GO:0080186: developmental vegetative growth | 1.31E-03 |
| 60 | GO:0071669: plant-type cell wall organization or biogenesis | 1.31E-03 |
| 61 | GO:0005978: glycogen biosynthetic process | 1.51E-03 |
| 62 | GO:0018401: peptidyl-proline hydroxylation to 4-hydroxy-L-proline | 1.51E-03 |
| 63 | GO:0006511: ubiquitin-dependent protein catabolic process | 1.58E-03 |
| 64 | GO:0006367: transcription initiation from RNA polymerase II promoter | 1.72E-03 |
| 65 | GO:0009097: isoleucine biosynthetic process | 1.72E-03 |
| 66 | GO:0006972: hyperosmotic response | 1.72E-03 |
| 67 | GO:0015996: chlorophyll catabolic process | 1.72E-03 |
| 68 | GO:0015979: photosynthesis | 1.89E-03 |
| 69 | GO:0000373: Group II intron splicing | 1.95E-03 |
| 70 | GO:0009056: catabolic process | 1.95E-03 |
| 71 | GO:0009051: pentose-phosphate shunt, oxidative branch | 1.95E-03 |
| 72 | GO:0006098: pentose-phosphate shunt | 1.95E-03 |
| 73 | GO:0071577: zinc II ion transmembrane transport | 2.18E-03 |
| 74 | GO:0090332: stomatal closure | 2.18E-03 |
| 75 | GO:0009098: leucine biosynthetic process | 2.18E-03 |
| 76 | GO:0009809: lignin biosynthetic process | 2.27E-03 |
| 77 | GO:0000103: sulfate assimilation | 2.41E-03 |
| 78 | GO:0009408: response to heat | 2.61E-03 |
| 79 | GO:0043085: positive regulation of catalytic activity | 2.66E-03 |
| 80 | GO:0006807: nitrogen compound metabolic process | 3.18E-03 |
| 81 | GO:0006006: glucose metabolic process | 3.18E-03 |
| 82 | GO:0007034: vacuolar transport | 3.45E-03 |
| 83 | GO:0007031: peroxisome organization | 3.73E-03 |
| 84 | GO:0006863: purine nucleobase transport | 4.02E-03 |
| 85 | GO:0006071: glycerol metabolic process | 4.02E-03 |
| 86 | GO:0006289: nucleotide-excision repair | 4.31E-03 |
| 87 | GO:2000377: regulation of reactive oxygen species metabolic process | 4.31E-03 |
| 88 | GO:0006366: transcription from RNA polymerase II promoter | 4.92E-03 |
| 89 | GO:0009651: response to salt stress | 5.07E-03 |
| 90 | GO:0030433: ubiquitin-dependent ERAD pathway | 5.24E-03 |
| 91 | GO:0009555: pollen development | 5.39E-03 |
| 92 | GO:0046686: response to cadmium ion | 5.66E-03 |
| 93 | GO:0043161: proteasome-mediated ubiquitin-dependent protein catabolic process | 6.18E-03 |
| 94 | GO:0051028: mRNA transport | 6.22E-03 |
| 95 | GO:0006662: glycerol ether metabolic process | 6.92E-03 |
| 96 | GO:0019252: starch biosynthetic process | 7.64E-03 |
| 97 | GO:0006635: fatty acid beta-oxidation | 8.01E-03 |
| 98 | GO:0030163: protein catabolic process | 8.77E-03 |
| 99 | GO:0010286: heat acclimation | 9.56E-03 |
| 100 | GO:0048366: leaf development | 1.01E-02 |
| 101 | GO:0009615: response to virus | 1.04E-02 |
| 102 | GO:0010029: regulation of seed germination | 1.08E-02 |
| 103 | GO:0006974: cellular response to DNA damage stimulus | 1.12E-02 |
| 104 | GO:0008219: cell death | 1.25E-02 |
| 105 | GO:0045454: cell redox homeostasis | 1.27E-02 |
| 106 | GO:0042742: defense response to bacterium | 1.32E-02 |
| 107 | GO:0006979: response to oxidative stress | 1.33E-02 |
| 108 | GO:0006499: N-terminal protein myristoylation | 1.34E-02 |
| 109 | GO:0010043: response to zinc ion | 1.38E-02 |
| 110 | GO:0009853: photorespiration | 1.48E-02 |
| 111 | GO:0032259: methylation | 1.50E-02 |
| 112 | GO:0034599: cellular response to oxidative stress | 1.52E-02 |
| 113 | GO:0006099: tricarboxylic acid cycle | 1.52E-02 |
| 114 | GO:0006629: lipid metabolic process | 1.57E-02 |
| 115 | GO:0030001: metal ion transport | 1.62E-02 |
| 116 | GO:0006631: fatty acid metabolic process | 1.67E-02 |
| 117 | GO:0042542: response to hydrogen peroxide | 1.72E-02 |
| 118 | GO:0009744: response to sucrose | 1.77E-02 |
| 119 | GO:0051603: proteolysis involved in cellular protein catabolic process | 2.24E-02 |
| 120 | GO:0048316: seed development | 2.52E-02 |
| 121 | GO:0009553: embryo sac development | 2.75E-02 |
| 122 | GO:0016036: cellular response to phosphate starvation | 3.94E-02 |
| 123 | GO:0009739: response to gibberellin | 4.49E-02 |
| 124 | GO:0010468: regulation of gene expression | 4.70E-02 |
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0004846: urate oxidase activity | 0.00E+00 |
| 2 | GO:0003846: 2-acylglycerol O-acyltransferase activity | 0.00E+00 |
| 3 | GO:0050242: pyruvate, phosphate dikinase activity | 0.00E+00 |
| 4 | GO:0016508: long-chain-enoyl-CoA hydratase activity | 0.00E+00 |
| 5 | GO:0051723: protein methylesterase activity | 0.00E+00 |
| 6 | GO:0015211: purine nucleoside transmembrane transporter activity | 0.00E+00 |
| 7 | GO:0042030: ATPase inhibitor activity | 0.00E+00 |
| 8 | GO:0080007: S-nitrosoglutathione reductase activity | 0.00E+00 |
| 9 | GO:0050342: tocopherol O-methyltransferase activity | 0.00E+00 |
| 10 | GO:0004622: lysophospholipase activity | 0.00E+00 |
| 11 | GO:0016701: oxidoreductase activity, acting on single donors with incorporation of molecular oxygen | 0.00E+00 |
| 12 | GO:0051903: S-(hydroxymethyl)glutathione dehydrogenase activity | 0.00E+00 |
| 13 | GO:0031593: polyubiquitin binding | 1.54E-05 |
| 14 | GO:0019707: protein-cysteine S-acyltransferase activity | 7.90E-05 |
| 15 | GO:0016768: spermine synthase activity | 7.90E-05 |
| 16 | GO:0051741: 2-methyl-6-phytyl-1,4-benzoquinone methyltransferase activity | 7.90E-05 |
| 17 | GO:0090430: caffeoyl-CoA: alcohol caffeoyl transferase activity | 7.90E-05 |
| 18 | GO:0008692: 3-hydroxybutyryl-CoA epimerase activity | 7.90E-05 |
| 19 | GO:0004112: cyclic-nucleotide phosphodiesterase activity | 7.90E-05 |
| 20 | GO:0046964: 3'-phosphoadenosine 5'-phosphosulfate transmembrane transporter activity | 7.90E-05 |
| 21 | GO:0018708: thiol S-methyltransferase activity | 1.89E-04 |
| 22 | GO:0019172: glyoxalase III activity | 1.89E-04 |
| 23 | GO:0015179: L-amino acid transmembrane transporter activity | 1.89E-04 |
| 24 | GO:0010331: gibberellin binding | 1.89E-04 |
| 25 | GO:0004617: phosphoglycerate dehydrogenase activity | 1.89E-04 |
| 26 | GO:0004766: spermidine synthase activity | 1.89E-04 |
| 27 | GO:0003857: 3-hydroxyacyl-CoA dehydrogenase activity | 1.89E-04 |
| 28 | GO:0008964: phosphoenolpyruvate carboxylase activity | 3.17E-04 |
| 29 | GO:0016805: dipeptidase activity | 3.17E-04 |
| 30 | GO:0016151: nickel cation binding | 3.17E-04 |
| 31 | GO:0052656: L-isoleucine transaminase activity | 4.58E-04 |
| 32 | GO:0004165: dodecenoyl-CoA delta-isomerase activity | 4.58E-04 |
| 33 | GO:0052654: L-leucine transaminase activity | 4.58E-04 |
| 34 | GO:0004300: enoyl-CoA hydratase activity | 4.58E-04 |
| 35 | GO:0052655: L-valine transaminase activity | 4.58E-04 |
| 36 | GO:0001653: peptide receptor activity | 4.58E-04 |
| 37 | GO:0015203: polyamine transmembrane transporter activity | 4.58E-04 |
| 38 | GO:0070628: proteasome binding | 6.09E-04 |
| 39 | GO:0008878: glucose-1-phosphate adenylyltransferase activity | 6.09E-04 |
| 40 | GO:0004345: glucose-6-phosphate dehydrogenase activity | 6.09E-04 |
| 41 | GO:0004084: branched-chain-amino-acid transaminase activity | 6.09E-04 |
| 42 | GO:0005459: UDP-galactose transmembrane transporter activity | 7.72E-04 |
| 43 | GO:0008198: ferrous iron binding | 7.72E-04 |
| 44 | GO:0016462: pyrophosphatase activity | 9.42E-04 |
| 45 | GO:0036402: proteasome-activating ATPase activity | 9.42E-04 |
| 46 | GO:0031369: translation initiation factor binding | 9.42E-04 |
| 47 | GO:0004616: phosphogluconate dehydrogenase (decarboxylating) activity | 1.12E-03 |
| 48 | GO:0004656: procollagen-proline 4-dioxygenase activity | 1.12E-03 |
| 49 | GO:0008235: metalloexopeptidase activity | 1.31E-03 |
| 50 | GO:0004427: inorganic diphosphatase activity | 1.31E-03 |
| 51 | GO:0008121: ubiquinol-cytochrome-c reductase activity | 1.31E-03 |
| 52 | GO:0016621: cinnamoyl-CoA reductase activity | 1.31E-03 |
| 53 | GO:0008889: glycerophosphodiester phosphodiesterase activity | 1.95E-03 |
| 54 | GO:0015174: basic amino acid transmembrane transporter activity | 2.18E-03 |
| 55 | GO:0003924: GTPase activity | 2.61E-03 |
| 56 | GO:0004177: aminopeptidase activity | 2.66E-03 |
| 57 | GO:0004022: alcohol dehydrogenase (NAD) activity | 3.18E-03 |
| 58 | GO:0005315: inorganic phosphate transmembrane transporter activity | 3.18E-03 |
| 59 | GO:0015662: ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism | 3.18E-03 |
| 60 | GO:0015035: protein disulfide oxidoreductase activity | 3.31E-03 |
| 61 | GO:0008131: primary amine oxidase activity | 3.45E-03 |
| 62 | GO:0017025: TBP-class protein binding | 3.73E-03 |
| 63 | GO:0031418: L-ascorbic acid binding | 4.31E-03 |
| 64 | GO:0005385: zinc ion transmembrane transporter activity | 4.31E-03 |
| 65 | GO:0043130: ubiquitin binding | 4.31E-03 |
| 66 | GO:0005515: protein binding | 4.34E-03 |
| 67 | GO:0016491: oxidoreductase activity | 4.39E-03 |
| 68 | GO:0016887: ATPase activity | 4.54E-03 |
| 69 | GO:0005345: purine nucleobase transmembrane transporter activity | 4.61E-03 |
| 70 | GO:0019706: protein-cysteine S-palmitoyltransferase activity | 4.92E-03 |
| 71 | GO:0003727: single-stranded RNA binding | 5.89E-03 |
| 72 | GO:0047134: protein-disulfide reductase activity | 6.22E-03 |
| 73 | GO:0046873: metal ion transmembrane transporter activity | 6.92E-03 |
| 74 | GO:0008536: Ran GTPase binding | 6.92E-03 |
| 75 | GO:0050662: coenzyme binding | 7.28E-03 |
| 76 | GO:0004791: thioredoxin-disulfide reductase activity | 7.28E-03 |
| 77 | GO:0048038: quinone binding | 8.01E-03 |
| 78 | GO:0000287: magnesium ion binding | 8.39E-03 |
| 79 | GO:0004197: cysteine-type endopeptidase activity | 8.39E-03 |
| 80 | GO:0005507: copper ion binding | 8.44E-03 |
| 81 | GO:0016671: oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor | 8.77E-03 |
| 82 | GO:0003684: damaged DNA binding | 9.16E-03 |
| 83 | GO:0016787: hydrolase activity | 9.17E-03 |
| 84 | GO:0016597: amino acid binding | 9.96E-03 |
| 85 | GO:0005525: GTP binding | 1.01E-02 |
| 86 | GO:0051213: dioxygenase activity | 1.04E-02 |
| 87 | GO:0005096: GTPase activator activity | 1.29E-02 |
| 88 | GO:0030145: manganese ion binding | 1.38E-02 |
| 89 | GO:0003697: single-stranded DNA binding | 1.48E-02 |
| 90 | GO:0016706: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors | 1.48E-02 |
| 91 | GO:0005215: transporter activity | 1.50E-02 |
| 92 | GO:0050661: NADP binding | 1.62E-02 |
| 93 | GO:0009055: electron carrier activity | 1.68E-02 |
| 94 | GO:0051537: 2 iron, 2 sulfur cluster binding | 1.87E-02 |
| 95 | GO:0015293: symporter activity | 1.92E-02 |
| 96 | GO:0051287: NAD binding | 2.02E-02 |
| 97 | GO:0003899: DNA-directed 5'-3' RNA polymerase activity | 2.19E-02 |
| 98 | GO:0016747: transferase activity, transferring acyl groups other than amino-acyl groups | 2.52E-02 |
| 99 | GO:0000166: nucleotide binding | 2.79E-02 |
| 100 | GO:0051082: unfolded protein binding | 2.81E-02 |
| 101 | GO:0015297: antiporter activity | 4.01E-02 |
| 102 | GO:0005516: calmodulin binding | 4.18E-02 |
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0019822: P4 peroxisome | 0.00E+00 |
| 2 | GO:0008540: proteasome regulatory particle, base subcomplex | 7.61E-05 |
| 3 | GO:0000138: Golgi trans cisterna | 7.90E-05 |
| 4 | GO:0005737: cytoplasm | 1.13E-04 |
| 5 | GO:0005777: peroxisome | 2.15E-04 |
| 6 | GO:0000502: proteasome complex | 2.23E-04 |
| 7 | GO:0030139: endocytic vesicle | 3.17E-04 |
| 8 | GO:0005773: vacuole | 9.79E-04 |
| 9 | GO:0031597: cytosolic proteasome complex | 1.12E-03 |
| 10 | GO:0030173: integral component of Golgi membrane | 1.12E-03 |
| 11 | GO:0005829: cytosol | 1.19E-03 |
| 12 | GO:0031595: nuclear proteasome complex | 1.31E-03 |
| 13 | GO:0005811: lipid particle | 1.72E-03 |
| 14 | GO:0009514: glyoxysome | 1.72E-03 |
| 15 | GO:0009507: chloroplast | 1.90E-03 |
| 16 | GO:0005665: DNA-directed RNA polymerase II, core complex | 2.92E-03 |
| 17 | GO:0005750: mitochondrial respiratory chain complex III | 3.45E-03 |
| 18 | GO:0030176: integral component of endoplasmic reticulum membrane | 3.73E-03 |
| 19 | GO:0005769: early endosome | 4.02E-03 |
| 20 | GO:0045271: respiratory chain complex I | 4.61E-03 |
| 21 | GO:0005759: mitochondrial matrix | 5.03E-03 |
| 22 | GO:0005778: peroxisomal membrane | 9.56E-03 |
| 23 | GO:0000932: P-body | 1.04E-02 |
| 24 | GO:0005643: nuclear pore | 1.25E-02 |
| 25 | GO:0009570: chloroplast stroma | 1.62E-02 |
| 26 | GO:0031902: late endosome membrane | 1.67E-02 |
| 27 | GO:0005783: endoplasmic reticulum | 1.80E-02 |
| 28 | GO:0005774: vacuolar membrane | 1.89E-02 |
| 29 | GO:0031966: mitochondrial membrane | 2.08E-02 |
| 30 | GO:0005887: integral component of plasma membrane | 2.13E-02 |
| 31 | GO:0005618: cell wall | 2.31E-02 |
| 32 | GO:0005747: mitochondrial respiratory chain complex I | 2.52E-02 |
| 33 | GO:0005730: nucleolus | 2.56E-02 |
| 34 | GO:0005802: trans-Golgi network | 4.45E-02 |