co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT3G56940

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0015979: photosynthesis	6.47E-17
2	GO:0009735: response to cytokinin	3.52E-08
3	GO:0010027: thylakoid membrane organization	1.92E-06
4	GO:0010196: nonphotochemical quenching	2.68E-06
5	GO:0071277: cellular response to calcium ion	1.77E-05
6	GO:0015671: oxygen transport	1.77E-05
7	GO:1902458: positive regulation of stomatal opening	1.77E-05
8	GO:0080183: response to photooxidative stress	4.61E-05
9	GO:0006729: tetrahydrobiopterin biosynthetic process	4.61E-05
10	GO:1903426: regulation of reactive oxygen species biosynthetic process	4.61E-05
11	GO:0015714: phosphoenolpyruvate transport	8.18E-05
12	GO:0090391: granum assembly	8.18E-05
13	GO:0071492: cellular response to UV-A	8.18E-05
14	GO:0009658: chloroplast organization	9.77E-05
15	GO:0015995: chlorophyll biosynthetic process	1.44E-04
16	GO:0015713: phosphoglycerate transport	1.69E-04
17	GO:0071486: cellular response to high light intensity	1.69E-04
18	GO:0045038: protein import into chloroplast thylakoid membrane	2.19E-04
19	GO:0031365: N-terminal protein amino acid modification	2.19E-04
20	GO:0010190: cytochrome b6f complex assembly	2.72E-04
21	GO:0009635: response to herbicide	2.72E-04
22	GO:0009644: response to high light intensity	2.90E-04
23	GO:0009769: photosynthesis, light harvesting in photosystem II	3.84E-04
24	GO:0009772: photosynthetic electron transport in photosystem II	3.84E-04
25	GO:0009704: de-etiolation	4.43E-04
26	GO:2000070: regulation of response to water deprivation	4.43E-04
27	GO:0048564: photosystem I assembly	4.43E-04
28	GO:0007186: G-protein coupled receptor signaling pathway	5.05E-04
29	GO:0015996: chlorophyll catabolic process	5.05E-04
30	GO:0019432: triglyceride biosynthetic process	5.68E-04
31	GO:0090333: regulation of stomatal closure	5.68E-04
32	GO:0009245: lipid A biosynthetic process	5.68E-04
33	GO:0009773: photosynthetic electron transport in photosystem I	7.68E-04
34	GO:0018119: peptidyl-cysteine S-nitrosylation	7.68E-04
35	GO:0045037: protein import into chloroplast stroma	8.38E-04
36	GO:0006006: glucose metabolic process	9.08E-04
37	GO:0019253: reductive pentose-phosphate cycle	9.82E-04
38	GO:0010207: photosystem II assembly	9.82E-04
39	GO:0009768: photosynthesis, light harvesting in photosystem I	1.29E-03
40	GO:0080167: response to karrikin	1.60E-03
41	GO:0042335: cuticle development	1.81E-03
42	GO:0006412: translation	1.84E-03
43	GO:0010182: sugar mediated signaling pathway	1.90E-03
44	GO:0015986: ATP synthesis coupled proton transport	2.00E-03
45	GO:0010286: heat acclimation	2.60E-03
46	GO:0009627: systemic acquired resistance	3.02E-03
47	GO:0018298: protein-chromophore linkage	3.36E-03
48	GO:0010119: regulation of stomatal movement	3.70E-03
49	GO:0006631: fatty acid metabolic process	4.43E-03
50	GO:0055085: transmembrane transport	5.21E-03
51	GO:0042538: hyperosmotic salinity response	5.48E-03
52	GO:0006096: glycolytic process	6.45E-03
53	GO:0006633: fatty acid biosynthetic process	1.01E-02
54	GO:0009737: response to abscisic acid	1.78E-02
55	GO:0009416: response to light stimulus	3.39E-02
56	GO:0009611: response to wounding	3.44E-02
57	GO:0045893: positive regulation of transcription, DNA-templated	3.74E-02

Rank	GO Term	Adjusted P value
1	GO:0051738: xanthophyll binding	0.00E+00
2	GO:0016168: chlorophyll binding	1.74E-08
3	GO:0015121: phosphoenolpyruvate:phosphate antiporter activity	1.77E-05
4	GO:0008124: 4-alpha-hydroxytetrahydrobiopterin dehydratase activity	1.77E-05
5	GO:0005344: oxygen transporter activity	1.77E-05
6	GO:0022891: substrate-specific transmembrane transporter activity	4.31E-05
7	GO:0047100: glyceraldehyde-3-phosphate dehydrogenase (NADP+) (phosphorylating) activity	4.61E-05
8	GO:0016630: protochlorophyllide reductase activity	4.61E-05
9	GO:0016620: oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor	8.18E-05
10	GO:0016851: magnesium chelatase activity	1.23E-04
11	GO:0015120: phosphoglycerate transmembrane transporter activity	1.69E-04
12	GO:0003959: NADPH dehydrogenase activity	2.19E-04
13	GO:0031177: phosphopantetheine binding	2.72E-04
14	GO:0000035: acyl binding	3.27E-04
15	GO:0008235: metalloexopeptidase activity	3.84E-04
16	GO:0003735: structural constituent of ribosome	4.32E-04
17	GO:0000036: ACP phosphopantetheine attachment site binding involved in fatty acid biosynthetic process	4.43E-04
18	GO:0004177: aminopeptidase activity	7.68E-04
19	GO:0031409: pigment binding	1.13E-03
20	GO:0046933: proton-transporting ATP synthase activity, rotational mechanism	1.90E-03
21	GO:0050661: NADP binding	4.31E-03
22	GO:0005198: structural molecule activity	5.07E-03
23	GO:0051287: NAD binding	5.34E-03
24	GO:0005509: calcium ion binding	7.65E-03
25	GO:0019843: rRNA binding	8.58E-03
26	GO:0015297: antiporter activity	1.04E-02
27	GO:0016887: ATPase activity	3.07E-02
28	GO:0019825: oxygen binding	4.36E-02

Rank	GO Term	Adjusted P value
1	GO:0009535: chloroplast thylakoid membrane	2.52E-20
2	GO:0009507: chloroplast	1.70E-17
3	GO:0009579: thylakoid	1.51E-16
4	GO:0009534: chloroplast thylakoid	1.60E-16
5	GO:0009941: chloroplast envelope	8.37E-09
6	GO:0009523: photosystem II	8.71E-07
7	GO:0009570: chloroplast stroma	8.50E-06
8	GO:0009515: granal stacked thylakoid	1.77E-05
9	GO:0030095: chloroplast photosystem II	1.83E-05
10	GO:0010287: plastoglobule	2.81E-05
11	GO:0009654: photosystem II oxygen evolving complex	3.11E-05
12	GO:0009522: photosystem I	6.79E-05
13	GO:0019898: extrinsic component of membrane	7.35E-05
14	GO:0010007: magnesium chelatase complex	8.18E-05
15	GO:0009528: plastid inner membrane	8.18E-05
16	GO:0010319: stromule	1.06E-04
17	GO:0009517: PSII associated light-harvesting complex II	1.69E-04
18	GO:0009527: plastid outer membrane	1.69E-04
19	GO:0031977: thylakoid lumen	2.46E-04
20	GO:0045261: proton-transporting ATP synthase complex, catalytic core F(1)	2.72E-04
21	GO:0016021: integral component of membrane	3.68E-04
22	GO:0009538: photosystem I reaction center	4.43E-04
23	GO:0009543: chloroplast thylakoid lumen	6.33E-04
24	GO:0000311: plastid large ribosomal subunit	8.38E-04
25	GO:0000312: plastid small ribosomal subunit	9.82E-04
26	GO:0030076: light-harvesting complex	1.06E-03
27	GO:0005840: ribosome	1.22E-03
28	GO:0042651: thylakoid membrane	1.29E-03
29	GO:0009532: plastid stroma	1.37E-03
30	GO:0031969: chloroplast membrane	1.60E-03
31	GO:0005778: peroxisomal membrane	2.60E-03
32	GO:0009707: chloroplast outer membrane	3.36E-03
33	GO:0015934: large ribosomal subunit	3.70E-03
34	GO:0022627: cytosolic small ribosomal subunit	1.31E-02
35	GO:0016020: membrane	2.02E-02