co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT3G56370

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0007638: mechanosensory behavior	0.00E+00
2	GO:0006114: glycerol biosynthetic process	0.00E+00
3	GO:0042493: response to drug	0.00E+00
4	GO:0071555: cell wall organization	4.41E-09
5	GO:0009082: branched-chain amino acid biosynthetic process	7.14E-05
6	GO:0007155: cell adhesion	1.23E-04
7	GO:0019510: S-adenosylhomocysteine catabolic process	1.64E-04
8	GO:0005980: glycogen catabolic process	1.64E-04
9	GO:0000032: cell wall mannoprotein biosynthetic process	1.64E-04
10	GO:0032025: response to cobalt ion	1.64E-04
11	GO:0042759: long-chain fatty acid biosynthetic process	1.64E-04
12	GO:0010198: synergid death	3.73E-04
13	GO:0033353: S-adenosylmethionine cycle	3.73E-04
14	GO:0045717: negative regulation of fatty acid biosynthetic process	3.73E-04
15	GO:0009833: plant-type primary cell wall biogenesis	5.67E-04
16	GO:0005975: carbohydrate metabolic process	5.90E-04
17	GO:0090506: axillary shoot meristem initiation	6.11E-04
18	GO:0033591: response to L-ascorbic acid	6.11E-04
19	GO:0006065: UDP-glucuronate biosynthetic process	6.11E-04
20	GO:0016998: cell wall macromolecule catabolic process	7.57E-04
21	GO:0030245: cellulose catabolic process	8.26E-04
22	GO:0007231: osmosensory signaling pathway	8.73E-04
23	GO:0051016: barbed-end actin filament capping	8.73E-04
24	GO:0009650: UV protection	8.73E-04
25	GO:0009298: GDP-mannose biosynthetic process	8.73E-04
26	GO:0010371: regulation of gibberellin biosynthetic process	8.73E-04
27	GO:0009831: plant-type cell wall modification involved in multidimensional cell growth	8.97E-04
28	GO:0006552: leucine catabolic process	1.16E-03
29	GO:0033500: carbohydrate homeostasis	1.16E-03
30	GO:0031122: cytoplasmic microtubule organization	1.16E-03
31	GO:0019287: isopentenyl diphosphate biosynthetic process, mevalonate pathway	1.16E-03
32	GO:0009956: radial pattern formation	1.16E-03
33	GO:0045487: gibberellin catabolic process	1.47E-03
34	GO:0010583: response to cyclopentenone	1.59E-03
35	GO:0006796: phosphate-containing compound metabolic process	1.80E-03
36	GO:0006574: valine catabolic process	1.80E-03
37	GO:0006014: D-ribose metabolic process	1.80E-03
38	GO:0009828: plant-type cell wall loosening	1.80E-03
39	GO:0016042: lipid catabolic process	1.83E-03
40	GO:0000079: regulation of cyclin-dependent protein serine/threonine kinase activity	2.17E-03
41	GO:0010067: procambium histogenesis	2.17E-03
42	GO:2000033: regulation of seed dormancy process	2.17E-03
43	GO:0009099: valine biosynthetic process	2.17E-03
44	GO:0045490: pectin catabolic process	2.48E-03
45	GO:0010411: xyloglucan metabolic process	2.52E-03
46	GO:0006955: immune response	2.55E-03
47	GO:0030244: cellulose biosynthetic process	2.78E-03
48	GO:0009832: plant-type cell wall biogenesis	2.93E-03
49	GO:0045010: actin nucleation	2.95E-03
50	GO:0006075: (1->3)-beta-D-glucan biosynthetic process	3.37E-03
51	GO:0009657: plastid organization	3.37E-03
52	GO:0009097: isoleucine biosynthetic process	3.37E-03
53	GO:0016051: carbohydrate biosynthetic process	3.52E-03
54	GO:0006754: ATP biosynthetic process	3.81E-03
55	GO:0009098: leucine biosynthetic process	4.27E-03
56	GO:0042546: cell wall biogenesis	4.71E-03
57	GO:0006949: syncytium formation	4.75E-03
58	GO:0010192: mucilage biosynthetic process	4.75E-03
59	GO:0010162: seed dormancy process	4.75E-03
60	GO:0019538: protein metabolic process	4.75E-03
61	GO:0046856: phosphatidylinositol dephosphorylation	5.25E-03
62	GO:0010015: root morphogenesis	5.25E-03
63	GO:0006816: calcium ion transport	5.25E-03
64	GO:0006415: translational termination	5.25E-03
65	GO:0009664: plant-type cell wall organization	5.68E-03
66	GO:0006820: anion transport	5.77E-03
67	GO:0030036: actin cytoskeleton organization	6.30E-03
68	GO:0009933: meristem structural organization	6.85E-03
69	GO:0010223: secondary shoot formation	6.85E-03
70	GO:0009266: response to temperature stimulus	6.85E-03
71	GO:0070588: calcium ion transmembrane transport	7.41E-03
72	GO:0010025: wax biosynthetic process	8.00E-03
73	GO:0006869: lipid transport	8.01E-03
74	GO:0043622: cortical microtubule organization	9.21E-03
75	GO:0007017: microtubule-based process	9.21E-03
76	GO:0006730: one-carbon metabolic process	1.05E-02
77	GO:0009294: DNA mediated transformation	1.11E-02
78	GO:0009411: response to UV	1.11E-02
79	GO:0001944: vasculature development	1.11E-02
80	GO:0019722: calcium-mediated signaling	1.18E-02
81	GO:0010089: xylem development	1.18E-02
82	GO:0016117: carotenoid biosynthetic process	1.25E-02
83	GO:0042335: cuticle development	1.32E-02
84	GO:0010087: phloem or xylem histogenesis	1.32E-02
85	GO:0010305: leaf vascular tissue pattern formation	1.39E-02
86	GO:0008360: regulation of cell shape	1.39E-02
87	GO:0010182: sugar mediated signaling pathway	1.39E-02
88	GO:0019252: starch biosynthetic process	1.54E-02
89	GO:0071554: cell wall organization or biogenesis	1.62E-02
90	GO:0010090: trichome morphogenesis	1.77E-02
91	GO:0016125: sterol metabolic process	1.86E-02
92	GO:0007267: cell-cell signaling	1.94E-02
93	GO:0016126: sterol biosynthetic process	2.10E-02
94	GO:0009826: unidimensional cell growth	2.25E-02
95	GO:0016311: dephosphorylation	2.45E-02
96	GO:0016049: cell growth	2.45E-02
97	GO:0010043: response to zinc ion	2.82E-02
98	GO:0007568: aging	2.82E-02
99	GO:0007169: transmembrane receptor protein tyrosine kinase signaling pathway	2.99E-02
100	GO:0010114: response to red light	3.60E-02
101	GO:0042538: hyperosmotic salinity response	4.23E-02
102	GO:0006812: cation transport	4.23E-02
103	GO:0009809: lignin biosynthetic process	4.45E-02
104	GO:0006486: protein glycosylation	4.45E-02

Rank	GO Term	Adjusted P value
1	GO:0043136: glycerol-3-phosphatase activity	0.00E+00
2	GO:0000121: glycerol-1-phosphatase activity	0.00E+00
3	GO:0004496: mevalonate kinase activity	0.00E+00
4	GO:0052655: L-valine transaminase activity	1.14E-05
5	GO:0052656: L-isoleucine transaminase activity	1.14E-05
6	GO:0052654: L-leucine transaminase activity	1.14E-05
7	GO:0004565: beta-galactosidase activity	1.38E-05
8	GO:0004084: branched-chain-amino-acid transaminase activity	2.11E-05
9	GO:0030570: pectate lyase activity	5.39E-05
10	GO:0004553: hydrolase activity, hydrolyzing O-glycosyl compounds	7.27E-05
11	GO:0016759: cellulose synthase activity	1.59E-04
12	GO:0047259: glucomannan 4-beta-mannosyltransferase activity	1.64E-04
13	GO:0005227: calcium activated cation channel activity	1.64E-04
14	GO:0004013: adenosylhomocysteinase activity	1.64E-04
15	GO:0008184: glycogen phosphorylase activity	1.64E-04
16	GO:0042834: peptidoglycan binding	1.64E-04
17	GO:0008568: microtubule-severing ATPase activity	1.64E-04
18	GO:0004645: phosphorylase activity	1.64E-04
19	GO:0004476: mannose-6-phosphate isomerase activity	1.64E-04
20	GO:0003979: UDP-glucose 6-dehydrogenase activity	6.11E-04
21	GO:0001872: (1->3)-beta-D-glucan binding	8.73E-04
22	GO:0004445: inositol-polyphosphate 5-phosphatase activity	8.73E-04
23	GO:0016149: translation release factor activity, codon specific	8.73E-04
24	GO:0008810: cellulase activity	8.97E-04
25	GO:0016760: cellulose synthase (UDP-forming) activity	8.97E-04
26	GO:0016757: transferase activity, transferring glycosyl groups	1.11E-03
27	GO:0052793: pectin acetylesterase activity	1.16E-03
28	GO:0052689: carboxylic ester hydrolase activity	1.23E-03
29	GO:0016787: hydrolase activity	1.25E-03
30	GO:0019901: protein kinase binding	1.40E-03
31	GO:0008381: mechanically-gated ion channel activity	1.47E-03
32	GO:0016762: xyloglucan:xyloglucosyl transferase activity	1.49E-03
33	GO:0034485: phosphatidylinositol-3,4,5-trisphosphate 5-phosphatase activity	1.80E-03
34	GO:0005516: calmodulin binding	2.13E-03
35	GO:0004747: ribokinase activity	2.17E-03
36	GO:0051753: mannan synthase activity	2.17E-03
37	GO:0004723: calcium-dependent protein serine/threonine phosphatase activity	2.17E-03
38	GO:0016798: hydrolase activity, acting on glycosyl bonds	2.52E-03
39	GO:0004427: inorganic diphosphatase activity	2.55E-03
40	GO:0008865: fructokinase activity	2.95E-03
41	GO:0052747: sinapyl alcohol dehydrogenase activity	2.95E-03
42	GO:0003843: 1,3-beta-D-glucan synthase activity	3.37E-03
43	GO:0008553: hydrogen-exporting ATPase activity, phosphorylative mechanism	3.81E-03
44	GO:0003747: translation release factor activity	3.81E-03
45	GO:0016788: hydrolase activity, acting on ester bonds	4.42E-03
46	GO:0015020: glucuronosyltransferase activity	4.75E-03
47	GO:0047372: acylglycerol lipase activity	5.25E-03
48	GO:0051287: NAD binding	5.48E-03
49	GO:0004439: phosphatidylinositol-4,5-bisphosphate 5-phosphatase activity	5.77E-03
50	GO:0045551: cinnamyl-alcohol dehydrogenase activity	5.77E-03
51	GO:0005262: calcium channel activity	6.30E-03
52	GO:0030246: carbohydrate binding	7.16E-03
53	GO:0005528: FK506 binding	8.59E-03
54	GO:0033612: receptor serine/threonine kinase binding	9.84E-03
55	GO:0016705: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen	1.12E-02
56	GO:0016829: lyase activity	1.18E-02
57	GO:0005102: receptor binding	1.25E-02
58	GO:0008289: lipid binding	1.41E-02
59	GO:0051015: actin filament binding	1.77E-02
60	GO:0016722: oxidoreductase activity, oxidizing metal ions	1.94E-02
61	GO:0005200: structural constituent of cytoskeleton	1.94E-02
62	GO:0016413: O-acetyltransferase activity	2.02E-02
63	GO:0008375: acetylglucosaminyltransferase activity	2.27E-02
64	GO:0030247: polysaccharide binding	2.36E-02
65	GO:0008757: S-adenosylmethionine-dependent methyltransferase activity	2.45E-02
66	GO:0004693: cyclin-dependent protein serine/threonine kinase activity	2.72E-02
67	GO:0004497: monooxygenase activity	2.89E-02
68	GO:0003746: translation elongation factor activity	3.01E-02
69	GO:0004712: protein serine/threonine/tyrosine kinase activity	3.20E-02
70	GO:0004871: signal transducer activity	3.63E-02
71	GO:0003755: peptidyl-prolyl cis-trans isomerase activity	4.02E-02
72	GO:0016301: kinase activity	4.40E-02
73	GO:0003777: microtubule motor activity	4.78E-02

Rank	GO Term	Adjusted P value
1	GO:0005886: plasma membrane	2.72E-08
2	GO:0048046: apoplast	8.00E-08
3	GO:0005576: extracellular region	3.66E-07
4	GO:0005618: cell wall	9.79E-07
5	GO:0031225: anchored component of membrane	1.92E-06
6	GO:0046658: anchored component of plasma membrane	7.05E-06
7	GO:0009505: plant-type cell wall	8.13E-05
8	GO:0010330: cellulose synthase complex	6.11E-04
9	GO:0005853: eukaryotic translation elongation factor 1 complex	6.11E-04
10	GO:0015630: microtubule cytoskeleton	8.73E-04
11	GO:0010005: cortical microtubule, transverse to long axis	2.17E-03
12	GO:0000148: 1,3-beta-D-glucan synthase complex	3.37E-03
13	GO:0005794: Golgi apparatus	4.51E-03
14	GO:0009506: plasmodesma	4.66E-03
15	GO:0016020: membrane	6.12E-03
16	GO:0005578: proteinaceous extracellular matrix	6.30E-03
17	GO:0005875: microtubule associated complex	8.00E-03
18	GO:0000139: Golgi membrane	2.09E-02
19	GO:0005874: microtubule	2.80E-02
20	GO:0005819: spindle	3.20E-02
21	GO:0031977: thylakoid lumen	3.40E-02