GO Enrichment Analysis of Co-expressed Genes with
AT3G56070
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0000494: box C/D snoRNA 3'-end processing | 0.00E+00 |
| 2 | GO:0080056: petal vascular tissue pattern formation | 0.00E+00 |
| 3 | GO:0000478: endonucleolytic cleavage involved in rRNA processing | 0.00E+00 |
| 4 | GO:0071731: response to nitric oxide | 0.00E+00 |
| 5 | GO:0031564: transcription antitermination | 0.00E+00 |
| 6 | GO:0080057: sepal vascular tissue pattern formation | 0.00E+00 |
| 7 | GO:0072321: chaperone-mediated protein transport | 0.00E+00 |
| 8 | GO:1990258: histone glutamine methylation | 0.00E+00 |
| 9 | GO:0044843: cell cycle G1/S phase transition | 0.00E+00 |
| 10 | GO:0006412: translation | 1.32E-33 |
| 11 | GO:0042254: ribosome biogenesis | 5.02E-13 |
| 12 | GO:0000027: ribosomal large subunit assembly | 3.17E-12 |
| 13 | GO:0006364: rRNA processing | 1.63E-10 |
| 14 | GO:0045041: protein import into mitochondrial intermembrane space | 3.58E-07 |
| 15 | GO:0002181: cytoplasmic translation | 1.37E-06 |
| 16 | GO:0006626: protein targeting to mitochondrion | 2.64E-06 |
| 17 | GO:0007005: mitochondrion organization | 9.78E-06 |
| 18 | GO:0031167: rRNA methylation | 1.04E-05 |
| 19 | GO:0009735: response to cytokinin | 1.50E-05 |
| 20 | GO:0006458: 'de novo' protein folding | 2.28E-05 |
| 21 | GO:0042026: protein refolding | 2.28E-05 |
| 22 | GO:0001510: RNA methylation | 5.19E-05 |
| 23 | GO:0061077: chaperone-mediated protein folding | 2.94E-04 |
| 24 | GO:0046686: response to cadmium ion | 3.11E-04 |
| 25 | GO:0006954: inflammatory response | 3.24E-04 |
| 26 | GO:1902626: assembly of large subunit precursor of preribosome | 3.24E-04 |
| 27 | GO:0045039: protein import into mitochondrial inner membrane | 3.24E-04 |
| 28 | GO:0008033: tRNA processing | 4.48E-04 |
| 29 | GO:0070301: cellular response to hydrogen peroxide | 4.66E-04 |
| 30 | GO:0051085: chaperone mediated protein folding requiring cofactor | 4.66E-04 |
| 31 | GO:0006241: CTP biosynthetic process | 4.66E-04 |
| 32 | GO:0006986: response to unfolded protein | 4.66E-04 |
| 33 | GO:0006165: nucleoside diphosphate phosphorylation | 4.66E-04 |
| 34 | GO:0006228: UTP biosynthetic process | 4.66E-04 |
| 35 | GO:0051131: chaperone-mediated protein complex assembly | 4.66E-04 |
| 36 | GO:0006183: GTP biosynthetic process | 6.21E-04 |
| 37 | GO:0032502: developmental process | 6.32E-04 |
| 38 | GO:0009793: embryo development ending in seed dormancy | 6.98E-04 |
| 39 | GO:0071493: cellular response to UV-B | 7.86E-04 |
| 40 | GO:0009955: adaxial/abaxial pattern specification | 1.14E-03 |
| 41 | GO:0016444: somatic cell DNA recombination | 1.14E-03 |
| 42 | GO:0042255: ribosome assembly | 1.54E-03 |
| 43 | GO:0008283: cell proliferation | 1.74E-03 |
| 44 | GO:0001558: regulation of cell growth | 1.76E-03 |
| 45 | GO:0000387: spliceosomal snRNP assembly | 2.22E-03 |
| 46 | GO:0010162: seed dormancy process | 2.46E-03 |
| 47 | GO:0006820: anion transport | 2.97E-03 |
| 48 | GO:0010588: cotyledon vascular tissue pattern formation | 3.24E-03 |
| 49 | GO:0010102: lateral root morphogenesis | 3.24E-03 |
| 50 | GO:0048467: gynoecium development | 3.52E-03 |
| 51 | GO:0009944: polarity specification of adaxial/abaxial axis | 4.40E-03 |
| 52 | GO:0030150: protein import into mitochondrial matrix | 4.40E-03 |
| 53 | GO:0051302: regulation of cell division | 4.70E-03 |
| 54 | GO:0006334: nucleosome assembly | 5.02E-03 |
| 55 | GO:0006413: translational initiation | 5.30E-03 |
| 56 | GO:0009651: response to salt stress | 5.34E-03 |
| 57 | GO:0009294: DNA mediated transformation | 5.67E-03 |
| 58 | GO:0010501: RNA secondary structure unwinding | 6.70E-03 |
| 59 | GO:0010305: leaf vascular tissue pattern formation | 7.06E-03 |
| 60 | GO:0006414: translational elongation | 9.28E-03 |
| 61 | GO:0016049: cell growth | 1.23E-02 |
| 62 | GO:0010311: lateral root formation | 1.32E-02 |
| 63 | GO:0006811: ion transport | 1.37E-02 |
| 64 | GO:0048527: lateral root development | 1.41E-02 |
| 65 | GO:0009631: cold acclimation | 1.41E-02 |
| 66 | GO:0010043: response to zinc ion | 1.41E-02 |
| 67 | GO:0000724: double-strand break repair via homologous recombination | 1.46E-02 |
| 68 | GO:0006099: tricarboxylic acid cycle | 1.56E-02 |
| 69 | GO:0009408: response to heat | 1.62E-02 |
| 70 | GO:0009744: response to sucrose | 1.80E-02 |
| 71 | GO:0009965: leaf morphogenesis | 1.96E-02 |
| 72 | GO:0042787: protein ubiquitination involved in ubiquitin-dependent protein catabolic process | 2.07E-02 |
| 73 | GO:0009846: pollen germination | 2.12E-02 |
| 74 | GO:0009734: auxin-activated signaling pathway | 2.28E-02 |
| 75 | GO:0010224: response to UV-B | 2.29E-02 |
| 76 | GO:0048367: shoot system development | 2.57E-02 |
| 77 | GO:0016569: covalent chromatin modification | 2.75E-02 |
| 78 | GO:0009553: embryo sac development | 2.81E-02 |
| 79 | GO:0000398: mRNA splicing, via spliceosome | 3.17E-02 |
| 80 | GO:0009845: seed germination | 3.56E-02 |
| 81 | GO:0006457: protein folding | 3.71E-02 |
| 82 | GO:0009790: embryo development | 3.76E-02 |
| 83 | GO:0006633: fatty acid biosynthetic process | 3.96E-02 |
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0001072: transcription antitermination factor activity, RNA binding | 0.00E+00 |
| 2 | GO:0102132: 3-oxo-pimeloyl-[acp] methyl ester reductase activity | 0.00E+00 |
| 3 | GO:1990259: histone-glutamine methyltransferase activity | 0.00E+00 |
| 4 | GO:0004316: 3-oxoacyl-[acyl-carrier-protein] reductase (NADPH) activity | 0.00E+00 |
| 5 | GO:0003735: structural constituent of ribosome | 5.21E-40 |
| 6 | GO:0003729: mRNA binding | 6.93E-16 |
| 7 | GO:0003723: RNA binding | 1.51E-10 |
| 8 | GO:0005507: copper ion binding | 3.23E-07 |
| 9 | GO:0008649: rRNA methyltransferase activity | 1.37E-06 |
| 10 | GO:0051082: unfolded protein binding | 2.64E-05 |
| 11 | GO:0030515: snoRNA binding | 3.11E-05 |
| 12 | GO:0015450: P-P-bond-hydrolysis-driven protein transmembrane transporter activity | 7.45E-05 |
| 13 | GO:0048037: cofactor binding | 8.09E-05 |
| 14 | GO:0003746: translation elongation factor activity | 1.06E-04 |
| 15 | GO:0044183: protein binding involved in protein folding | 1.11E-04 |
| 16 | GO:0004776: succinate-CoA ligase (GDP-forming) activity | 1.93E-04 |
| 17 | GO:0004775: succinate-CoA ligase (ADP-forming) activity | 1.93E-04 |
| 18 | GO:0070180: large ribosomal subunit rRNA binding | 3.24E-04 |
| 19 | GO:0004550: nucleoside diphosphate kinase activity | 4.66E-04 |
| 20 | GO:0008097: 5S rRNA binding | 4.66E-04 |
| 21 | GO:0031369: translation initiation factor binding | 9.59E-04 |
| 22 | GO:0008235: metalloexopeptidase activity | 1.34E-03 |
| 23 | GO:0015288: porin activity | 1.54E-03 |
| 24 | GO:0008308: voltage-gated anion channel activity | 1.76E-03 |
| 25 | GO:0001055: RNA polymerase II activity | 2.22E-03 |
| 26 | GO:0001054: RNA polymerase I activity | 2.71E-03 |
| 27 | GO:0001056: RNA polymerase III activity | 2.97E-03 |
| 28 | GO:0015266: protein channel activity | 3.24E-03 |
| 29 | GO:0008026: ATP-dependent helicase activity | 3.50E-03 |
| 30 | GO:0004407: histone deacetylase activity | 4.40E-03 |
| 31 | GO:0051087: chaperone binding | 4.70E-03 |
| 32 | GO:0003743: translation initiation factor activity | 6.64E-03 |
| 33 | GO:0004004: ATP-dependent RNA helicase activity | 1.19E-02 |
| 34 | GO:0050897: cobalt ion binding | 1.41E-02 |
| 35 | GO:0003697: single-stranded DNA binding | 1.51E-02 |
| 36 | GO:0003924: GTPase activity | 1.62E-02 |
| 37 | GO:0042393: histone binding | 1.65E-02 |
| 38 | GO:0051287: NAD binding | 2.07E-02 |
| 39 | GO:0003899: DNA-directed 5'-3' RNA polymerase activity | 2.23E-02 |
| 40 | GO:0003690: double-stranded DNA binding | 2.29E-02 |
| 41 | GO:0019843: rRNA binding | 3.36E-02 |
| 42 | GO:0008565: protein transporter activity | 3.82E-02 |
| 43 | GO:0005525: GTP binding | 4.70E-02 |
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0043186: P granule | 0.00E+00 |
| 2 | GO:0042719: mitochondrial intermembrane space protein transporter complex | 0.00E+00 |
| 3 | GO:0022625: cytosolic large ribosomal subunit | 1.37E-38 |
| 4 | GO:0005730: nucleolus | 1.10E-30 |
| 5 | GO:0022626: cytosolic ribosome | 1.28E-26 |
| 6 | GO:0005840: ribosome | 1.81E-26 |
| 7 | GO:0005829: cytosol | 2.37E-14 |
| 8 | GO:0022627: cytosolic small ribosomal subunit | 9.26E-12 |
| 9 | GO:0005773: vacuole | 9.39E-12 |
| 10 | GO:0005774: vacuolar membrane | 9.49E-11 |
| 11 | GO:0009506: plasmodesma | 6.82E-10 |
| 12 | GO:0015934: large ribosomal subunit | 1.06E-09 |
| 13 | GO:0005737: cytoplasm | 2.39E-08 |
| 14 | GO:0016020: membrane | 7.35E-08 |
| 15 | GO:0031428: box C/D snoRNP complex | 1.59E-05 |
| 16 | GO:0005742: mitochondrial outer membrane translocase complex | 5.19E-05 |
| 17 | GO:0005759: mitochondrial matrix | 6.31E-05 |
| 18 | GO:0015030: Cajal body | 7.87E-05 |
| 19 | GO:0071541: eukaryotic translation initiation factor 3 complex, eIF3m | 8.09E-05 |
| 20 | GO:0032040: small-subunit processome | 1.30E-04 |
| 21 | GO:0005758: mitochondrial intermembrane space | 2.41E-04 |
| 22 | GO:0015935: small ribosomal subunit | 2.94E-04 |
| 23 | GO:0005747: mitochondrial respiratory chain complex I | 3.03E-04 |
| 24 | GO:0034719: SMN-Sm protein complex | 3.24E-04 |
| 25 | GO:0005853: eukaryotic translation elongation factor 1 complex | 3.24E-04 |
| 26 | GO:0005682: U5 snRNP | 6.21E-04 |
| 27 | GO:0097526: spliceosomal tri-snRNP complex | 7.86E-04 |
| 28 | GO:0005687: U4 snRNP | 7.86E-04 |
| 29 | GO:0005689: U12-type spliceosomal complex | 1.14E-03 |
| 30 | GO:0071004: U2-type prespliceosome | 1.54E-03 |
| 31 | GO:0046930: pore complex | 1.76E-03 |
| 32 | GO:0005886: plasma membrane | 1.85E-03 |
| 33 | GO:0005736: DNA-directed RNA polymerase I complex | 1.98E-03 |
| 34 | GO:0005685: U1 snRNP | 1.98E-03 |
| 35 | GO:0005618: cell wall | 2.01E-03 |
| 36 | GO:0005666: DNA-directed RNA polymerase III complex | 2.22E-03 |
| 37 | GO:0071011: precatalytic spliceosome | 2.22E-03 |
| 38 | GO:0005686: U2 snRNP | 2.46E-03 |
| 39 | GO:0000418: DNA-directed RNA polymerase IV complex | 2.46E-03 |
| 40 | GO:0005743: mitochondrial inner membrane | 2.47E-03 |
| 41 | GO:0071013: catalytic step 2 spliceosome | 2.71E-03 |
| 42 | GO:0005852: eukaryotic translation initiation factor 3 complex | 2.71E-03 |
| 43 | GO:0005665: DNA-directed RNA polymerase II, core complex | 2.97E-03 |
| 44 | GO:0019013: viral nucleocapsid | 3.24E-03 |
| 45 | GO:0005741: mitochondrial outer membrane | 5.02E-03 |
| 46 | GO:0005739: mitochondrion | 7.13E-03 |
| 47 | GO:0016592: mediator complex | 8.56E-03 |
| 48 | GO:0030529: intracellular ribonucleoprotein complex | 1.06E-02 |
| 49 | GO:0005681: spliceosomal complex | 2.51E-02 |
| 50 | GO:0005732: small nucleolar ribonucleoprotein complex | 3.05E-02 |