co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT3G55620

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0006592: ornithine biosynthetic process	0.00E+00
2	GO:0039694: viral RNA genome replication	0.00E+00
3	GO:0030149: sphingolipid catabolic process	0.00E+00
4	GO:0034976: response to endoplasmic reticulum stress	3.99E-13
5	GO:0006457: protein folding	1.17E-09
6	GO:0000162: tryptophan biosynthetic process	1.60E-08
7	GO:0045454: cell redox homeostasis	4.16E-07
8	GO:0006099: tricarboxylic acid cycle	5.28E-05
9	GO:0006390: transcription from mitochondrial promoter	5.48E-05
10	GO:0035266: meristem growth	5.48E-05
11	GO:0007292: female gamete generation	5.48E-05
12	GO:0009700: indole phytoalexin biosynthetic process	5.48E-05
13	GO:0046686: response to cadmium ion	9.49E-05
14	GO:0080151: positive regulation of salicylic acid mediated signaling pathway	1.34E-04
15	GO:0051788: response to misfolded protein	1.34E-04
16	GO:0019752: carboxylic acid metabolic process	1.34E-04
17	GO:0033512: L-lysine catabolic process to acetyl-CoA via saccharopine	1.34E-04
18	GO:0008535: respiratory chain complex IV assembly	1.34E-04
19	GO:0030433: ubiquitin-dependent ERAD pathway	1.91E-04
20	GO:0009625: response to insect	2.10E-04
21	GO:0045039: protein import into mitochondrial inner membrane	2.28E-04
22	GO:0060968: regulation of gene silencing	2.28E-04
23	GO:0009306: protein secretion	2.29E-04
24	GO:0080156: mitochondrial mRNA modification	3.60E-04
25	GO:0010150: leaf senescence	3.87E-04
26	GO:0009735: response to cytokinin	4.16E-04
27	GO:0051205: protein insertion into membrane	4.45E-04
28	GO:0006461: protein complex assembly	5.66E-04
29	GO:0009697: salicylic acid biosynthetic process	5.66E-04
30	GO:0006564: L-serine biosynthetic process	5.66E-04
31	GO:0048827: phyllome development	6.92E-04
32	GO:0048232: male gamete generation	6.92E-04
33	GO:0043248: proteasome assembly	6.92E-04
34	GO:0016554: cytidine to uridine editing	6.92E-04
35	GO:0045899: positive regulation of RNA polymerase II transcriptional preinitiation complex assembly	6.92E-04
36	GO:0010043: response to zinc ion	7.69E-04
37	GO:0052033: pathogen-associated molecular pattern dependent induction by symbiont of host innate immune response	8.25E-04
38	GO:0009423: chorismate biosynthetic process	8.25E-04
39	GO:0009612: response to mechanical stimulus	8.25E-04
40	GO:0045087: innate immune response	8.40E-04
41	GO:0006102: isocitrate metabolic process	1.11E-03
42	GO:0009819: drought recovery	1.11E-03
43	GO:0010078: maintenance of root meristem identity	1.11E-03
44	GO:0010120: camalexin biosynthetic process	1.26E-03
45	GO:0006526: arginine biosynthetic process	1.26E-03
46	GO:0009414: response to water deprivation	1.33E-03
47	GO:0042742: defense response to bacterium	1.38E-03
48	GO:0010112: regulation of systemic acquired resistance	1.41E-03
49	GO:0010205: photoinhibition	1.58E-03
50	GO:0043067: regulation of programmed cell death	1.58E-03
51	GO:0048829: root cap development	1.75E-03
52	GO:0010015: root morphogenesis	1.93E-03
53	GO:0052544: defense response by callose deposition in cell wall	1.93E-03
54	GO:0009073: aromatic amino acid family biosynthetic process	1.93E-03
55	GO:0009409: response to cold	2.18E-03
56	GO:0010075: regulation of meristem growth	2.30E-03
57	GO:0009934: regulation of meristem structural organization	2.49E-03
58	GO:0009933: meristem structural organization	2.49E-03
59	GO:0090351: seedling development	2.70E-03
60	GO:0009969: xyloglucan biosynthetic process	2.70E-03
61	GO:0009790: embryo development	2.90E-03
62	GO:2000377: regulation of reactive oxygen species metabolic process	3.11E-03
63	GO:0006487: protein N-linked glycosylation	3.11E-03
64	GO:0031348: negative regulation of defense response	3.77E-03
65	GO:0006012: galactose metabolic process	4.00E-03
66	GO:0009617: response to bacterium	4.08E-03
67	GO:0010501: RNA secondary structure unwinding	4.71E-03
68	GO:0000413: protein peptidyl-prolyl isomerization	4.71E-03
69	GO:0042631: cellular response to water deprivation	4.71E-03
70	GO:0010197: polar nucleus fusion	4.96E-03
71	GO:0048868: pollen tube development	4.96E-03
72	GO:0006520: cellular amino acid metabolic process	4.96E-03
73	GO:0009646: response to absence of light	5.22E-03
74	GO:0009851: auxin biosynthetic process	5.48E-03
75	GO:0000302: response to reactive oxygen species	5.74E-03
76	GO:0009630: gravitropism	6.00E-03
77	GO:0009567: double fertilization forming a zygote and endosperm	6.55E-03
78	GO:0009651: response to salt stress	8.63E-03
79	GO:0048481: plant ovule development	8.91E-03
80	GO:0010311: lateral root formation	9.22E-03
81	GO:0006499: N-terminal protein myristoylation	9.54E-03
82	GO:0009407: toxin catabolic process	9.54E-03
83	GO:0009408: response to heat	9.65E-03
84	GO:0005975: carbohydrate metabolic process	1.21E-02
85	GO:0009926: auxin polar transport	1.26E-02
86	GO:0051707: response to other organism	1.26E-02
87	GO:0009644: response to high light intensity	1.33E-02
88	GO:0009965: leaf morphogenesis	1.37E-02
89	GO:0006855: drug transmembrane transport	1.40E-02
90	GO:0006486: protein glycosylation	1.55E-02
91	GO:0048367: shoot system development	1.79E-02
92	GO:0048316: seed development	1.79E-02
93	GO:0006952: defense response	1.84E-02
94	GO:0009553: embryo sac development	1.95E-02
95	GO:0009624: response to nematode	1.99E-02
96	GO:0050832: defense response to fungus	2.82E-02
97	GO:0006508: proteolysis	2.94E-02
98	GO:0009451: RNA modification	2.99E-02
99	GO:0043161: proteasome-mediated ubiquitin-dependent protein catabolic process	3.19E-02
100	GO:0006470: protein dephosphorylation	3.24E-02
101	GO:0009860: pollen tube growth	4.23E-02
102	GO:0015031: protein transport	4.41E-02
103	GO:0009723: response to ethylene	4.45E-02
104	GO:0016192: vesicle-mediated transport	4.85E-02

Rank	GO Term	Adjusted P value
1	GO:0008117: sphinganine-1-phosphate aldolase activity	0.00E+00
2	GO:0050220: prostaglandin-E synthase activity	0.00E+00
3	GO:0010298: dihydrocamalexic acid decarboxylase activity	0.00E+00
4	GO:0008777: acetylornithine deacetylase activity	0.00E+00
5	GO:0003756: protein disulfide isomerase activity	4.84E-10
6	GO:0004834: tryptophan synthase activity	3.22E-06
7	GO:0004149: dihydrolipoyllysine-residue succinyltransferase activity	5.48E-05
8	GO:0004648: O-phospho-L-serine:2-oxoglutarate aminotransferase activity	5.48E-05
9	GO:0004425: indole-3-glycerol-phosphate synthase activity	5.48E-05
10	GO:0033984: indole-3-glycerol-phosphate lyase activity	5.48E-05
11	GO:0004048: anthranilate phosphoribosyltransferase activity	5.48E-05
12	GO:0003899: DNA-directed 5'-3' RNA polymerase activity	1.13E-04
13	GO:0004776: succinate-CoA ligase (GDP-forming) activity	1.34E-04
14	GO:0004775: succinate-CoA ligase (ADP-forming) activity	1.34E-04
15	GO:0003849: 3-deoxy-7-phosphoheptulonate synthase activity	1.34E-04
16	GO:0052692: raffinose alpha-galactosidase activity	2.28E-04
17	GO:0000030: mannosyltransferase activity	2.28E-04
18	GO:0004557: alpha-galactosidase activity	2.28E-04
19	GO:0016853: isomerase activity	3.14E-04
20	GO:0004449: isocitrate dehydrogenase (NAD+) activity	3.33E-04
21	GO:0035529: NADH pyrophosphatase activity	3.33E-04
22	GO:0004579: dolichyl-diphosphooligosaccharide-protein glycotransferase activity	5.66E-04
23	GO:0005496: steroid binding	5.66E-04
24	GO:0047631: ADP-ribose diphosphatase activity	5.66E-04
25	GO:0015450: P-P-bond-hydrolysis-driven protein transmembrane transporter activity	6.69E-04
26	GO:0000210: NAD+ diphosphatase activity	6.92E-04
27	GO:0036402: proteasome-activating ATPase activity	6.92E-04
28	GO:0005507: copper ion binding	8.16E-04
29	GO:0004602: glutathione peroxidase activity	8.25E-04
30	GO:0016831: carboxy-lyase activity	9.62E-04
31	GO:0008320: protein transmembrane transporter activity	9.62E-04
32	GO:0043295: glutathione binding	9.62E-04
33	GO:0004034: aldose 1-epimerase activity	1.11E-03
34	GO:0071949: FAD binding	1.41E-03
35	GO:0001054: RNA polymerase I activity	1.93E-03
36	GO:0051082: unfolded protein binding	2.00E-03
37	GO:0017025: TBP-class protein binding	2.70E-03
38	GO:0010181: FMN binding	5.22E-03
39	GO:0008233: peptidase activity	6.43E-03
40	GO:0004497: monooxygenase activity	6.54E-03
41	GO:0008237: metallopeptidase activity	6.83E-03
42	GO:0004004: ATP-dependent RNA helicase activity	8.29E-03
43	GO:0015238: drug transmembrane transporter activity	9.22E-03
44	GO:0050897: cobalt ion binding	9.86E-03
45	GO:0003746: translation elongation factor activity	1.05E-02
46	GO:0003697: single-stranded DNA binding	1.05E-02
47	GO:0008422: beta-glucosidase activity	1.12E-02
48	GO:0004364: glutathione transferase activity	1.22E-02
49	GO:0043621: protein self-association	1.33E-02
50	GO:0003755: peptidyl-prolyl cis-trans isomerase activity	1.40E-02
51	GO:0051287: NAD binding	1.44E-02
52	GO:0016887: ATPase activity	1.50E-02
53	GO:0016298: lipase activity	1.59E-02
54	GO:0015035: protein disulfide oxidoreductase activity	2.04E-02
55	GO:0016746: transferase activity, transferring acyl groups	2.04E-02
56	GO:0008026: ATP-dependent helicase activity	2.08E-02
57	GO:0004386: helicase activity	2.12E-02
58	GO:0030246: carbohydrate binding	2.31E-02
59	GO:0030170: pyridoxal phosphate binding	2.52E-02
60	GO:0015297: antiporter activity	2.85E-02
61	GO:0016788: hydrolase activity, acting on ester bonds	4.07E-02

Rank	GO Term	Adjusted P value
1	GO:0019034: viral replication complex	0.00E+00
2	GO:0000327: lytic vacuole within protein storage vacuole	0.00E+00
3	GO:0005783: endoplasmic reticulum	6.54E-14
4	GO:0005788: endoplasmic reticulum lumen	6.03E-11
5	GO:0009505: plant-type cell wall	3.88E-07
6	GO:0005774: vacuolar membrane	1.59E-05
7	GO:0016020: membrane	3.49E-05
8	GO:0009507: chloroplast	4.45E-05
9	GO:0034245: mitochondrial DNA-directed RNA polymerase complex	5.48E-05
10	GO:0045252: oxoglutarate dehydrogenase complex	5.48E-05
11	GO:0005789: endoplasmic reticulum membrane	9.05E-05
12	GO:0030134: ER to Golgi transport vesicle	1.34E-04
13	GO:0009570: chloroplast stroma	5.20E-04
14	GO:0008250: oligosaccharyltransferase complex	5.66E-04
15	GO:0005739: mitochondrion	7.18E-04
16	GO:0009506: plasmodesma	7.39E-04
17	GO:0031597: cytosolic proteasome complex	8.25E-04
18	GO:0005801: cis-Golgi network	8.25E-04
19	GO:0031595: nuclear proteasome complex	9.62E-04
20	GO:0000326: protein storage vacuole	1.26E-03
21	GO:0005773: vacuole	1.27E-03
22	GO:0005736: DNA-directed RNA polymerase I complex	1.41E-03
23	GO:0008540: proteasome regulatory particle, base subcomplex	1.58E-03
24	GO:0043234: protein complex	2.90E-03
25	GO:0005829: cytosol	4.02E-03
26	GO:0016592: mediator complex	6.00E-03
27	GO:0005743: mitochondrial inner membrane	8.97E-03
28	GO:0009536: plastid	9.23E-03
29	GO:0048046: apoplast	9.75E-03
30	GO:0043231: intracellular membrane-bounded organelle	1.06E-02
31	GO:0005618: cell wall	1.11E-02
32	GO:0005794: Golgi apparatus	1.38E-02
33	GO:0000502: proteasome complex	1.55E-02
34	GO:0005886: plasma membrane	1.61E-02
35	GO:0005834: heterotrimeric G-protein complex	1.83E-02
36	GO:0009579: thylakoid	2.06E-02
37	GO:0031969: chloroplast membrane	4.68E-02
38	GO:0009941: chloroplast envelope	4.96E-02