Gene type: Transcription factor Metabolic gene Others DE type: Up Down Slightly_up Slightly_down Mixeded Others

GO Enrichment Analysis of Co-expressed Genes with

AT3G55130

GO-BP
GO-MF
GO-CC
RankGO TermAdjusted P value
1GO:0071327: cellular response to trehalose stimulus0.00E+00
2GO:0043048: dolichyl monophosphate biosynthetic process0.00E+00
3GO:0032260: response to jasmonic acid stimulus involved in jasmonic acid and ethylene-dependent systemic resistance0.00E+00
4GO:0017186: peptidyl-pyroglutamic acid biosynthetic process, using glutaminyl-peptide cyclotransferase0.00E+00
5GO:0002376: immune system process0.00E+00
6GO:0045792: negative regulation of cell size0.00E+00
7GO:1900367: positive regulation of defense response to insect0.00E+00
8GO:0006983: ER overload response0.00E+00
9GO:0010398: xylogalacturonan metabolic process0.00E+00
10GO:0033542: fatty acid beta-oxidation, unsaturated, even number0.00E+00
11GO:0009617: response to bacterium2.90E-11
12GO:0009816: defense response to bacterium, incompatible interaction1.82E-09
13GO:0009627: systemic acquired resistance8.67E-08
14GO:0006952: defense response8.78E-08
15GO:0006979: response to oxidative stress2.55E-07
16GO:0080142: regulation of salicylic acid biosynthetic process3.29E-07
17GO:0043069: negative regulation of programmed cell death3.73E-07
18GO:0010200: response to chitin1.66E-06
19GO:0010150: leaf senescence1.89E-06
20GO:0031349: positive regulation of defense response3.41E-06
21GO:0009625: response to insect6.74E-06
22GO:0042742: defense response to bacterium1.39E-05
23GO:0009626: plant-type hypersensitive response4.94E-05
24GO:0000162: tryptophan biosynthetic process7.59E-05
25GO:0009759: indole glucosinolate biosynthetic process1.15E-04
26GO:0010942: positive regulation of cell death1.15E-04
27GO:0050832: defense response to fungus1.84E-04
28GO:0010044: response to aluminum ion2.07E-04
29GO:0006468: protein phosphorylation2.07E-04
30GO:0009636: response to toxic substance2.17E-04
31GO:0009819: drought recovery2.62E-04
32GO:0030162: regulation of proteolysis2.62E-04
33GO:0051245: negative regulation of cellular defense response2.72E-04
34GO:0009609: response to symbiotic bacterium2.72E-04
35GO:1901183: positive regulation of camalexin biosynthetic process2.72E-04
36GO:0009700: indole phytoalexin biosynthetic process2.72E-04
37GO:0010230: alternative respiration2.72E-04
38GO:0006643: membrane lipid metabolic process2.72E-04
39GO:0060862: negative regulation of floral organ abscission2.72E-04
40GO:0010266: response to vitamin B12.72E-04
41GO:0009751: response to salicylic acid2.93E-04
42GO:0043562: cellular response to nitrogen levels3.23E-04
43GO:2000031: regulation of salicylic acid mediated signaling pathway3.23E-04
44GO:0010112: regulation of systemic acquired resistance3.90E-04
45GO:0080151: positive regulation of salicylic acid mediated signaling pathway5.99E-04
46GO:0080185: effector dependent induction by symbiont of host immune response5.99E-04
47GO:0010618: aerenchyma formation5.99E-04
48GO:0006212: uracil catabolic process5.99E-04
49GO:0043066: negative regulation of apoptotic process5.99E-04
50GO:0019483: beta-alanine biosynthetic process5.99E-04
51GO:0033512: L-lysine catabolic process to acetyl-CoA via saccharopine5.99E-04
52GO:0010541: acropetal auxin transport5.99E-04
53GO:0019441: tryptophan catabolic process to kynurenine5.99E-04
54GO:0002221: pattern recognition receptor signaling pathway5.99E-04
55GO:0009682: induced systemic resistance6.22E-04
56GO:0052544: defense response by callose deposition in cell wall6.22E-04
57GO:0012501: programmed cell death7.11E-04
58GO:0008219: cell death7.33E-04
59GO:0009407: toxin catabolic process8.29E-04
60GO:0002237: response to molecule of bacterial origin9.06E-04
61GO:0048281: inflorescence morphogenesis9.72E-04
62GO:1900140: regulation of seedling development9.72E-04
63GO:0061158: 3'-UTR-mediated mRNA destabilization9.72E-04
64GO:0055074: calcium ion homeostasis9.72E-04
65GO:0051176: positive regulation of sulfur metabolic process9.72E-04
66GO:0009969: xyloglucan biosynthetic process1.01E-03
67GO:0009414: response to water deprivation1.11E-03
68GO:0009863: salicylic acid mediated signaling pathway1.24E-03
69GO:0051707: response to other organism1.35E-03
70GO:0048194: Golgi vesicle budding1.39E-03
71GO:0007231: osmosensory signaling pathway1.39E-03
72GO:0033014: tetrapyrrole biosynthetic process1.39E-03
73GO:0043207: response to external biotic stimulus1.39E-03
74GO:0006612: protein targeting to membrane1.39E-03
75GO:0043161: proteasome-mediated ubiquitin-dependent protein catabolic process1.39E-03
76GO:0009399: nitrogen fixation1.39E-03
77GO:0007166: cell surface receptor signaling pathway1.44E-03
78GO:0016998: cell wall macromolecule catabolic process1.50E-03
79GO:0071456: cellular response to hypoxia1.64E-03
80GO:2000022: regulation of jasmonic acid mediated signaling pathway1.64E-03
81GO:0080037: negative regulation of cytokinin-activated signaling pathway1.86E-03
82GO:0060548: negative regulation of cell death1.86E-03
83GO:0010483: pollen tube reception1.86E-03
84GO:0048830: adventitious root development1.86E-03
85GO:1902584: positive regulation of response to water deprivation1.86E-03
86GO:0033500: carbohydrate homeostasis1.86E-03
87GO:0010363: regulation of plant-type hypersensitive response1.86E-03
88GO:0010600: regulation of auxin biosynthetic process1.86E-03
89GO:0010188: response to microbial phytotoxin1.86E-03
90GO:0006542: glutamine biosynthetic process1.86E-03
91GO:0009651: response to salt stress2.26E-03
92GO:0010225: response to UV-C2.37E-03
93GO:0009697: salicylic acid biosynthetic process2.37E-03
94GO:0030308: negative regulation of cell growth2.37E-03
95GO:2000762: regulation of phenylpropanoid metabolic process2.37E-03
96GO:0046283: anthocyanin-containing compound metabolic process2.37E-03
97GO:0009723: response to ethylene2.85E-03
98GO:1900425: negative regulation of defense response to bacterium2.93E-03
99GO:0002238: response to molecule of fungal origin2.93E-03
100GO:0000302: response to reactive oxygen species3.02E-03
101GO:0010310: regulation of hydrogen peroxide metabolic process3.52E-03
102GO:0052033: pathogen-associated molecular pattern dependent induction by symbiont of host innate immune response3.52E-03
103GO:0009611: response to wounding3.85E-03
104GO:0051607: defense response to virus4.12E-03
105GO:0009610: response to symbiotic fungus4.15E-03
106GO:0046470: phosphatidylcholine metabolic process4.15E-03
107GO:0043090: amino acid import4.15E-03
108GO:0071446: cellular response to salicylic acid stimulus4.15E-03
109GO:0030091: protein repair4.82E-03
110GO:0009787: regulation of abscisic acid-activated signaling pathway4.82E-03
111GO:0018401: peptidyl-proline hydroxylation to 4-hydroxy-L-proline4.82E-03
112GO:0043068: positive regulation of programmed cell death4.82E-03
113GO:1900150: regulation of defense response to fungus4.82E-03
114GO:0009808: lignin metabolic process5.52E-03
115GO:0009699: phenylpropanoid biosynthetic process5.52E-03
116GO:0006075: (1->3)-beta-D-glucan biosynthetic process5.52E-03
117GO:0010120: camalexin biosynthetic process5.52E-03
118GO:0010497: plasmodesmata-mediated intercellular transport5.52E-03
119GO:0010204: defense response signaling pathway, resistance gene-independent5.52E-03
120GO:0030968: endoplasmic reticulum unfolded protein response5.52E-03
121GO:0009817: defense response to fungus, incompatible interaction5.68E-03
122GO:0009832: plant-type cell wall biogenesis5.97E-03
123GO:0010311: lateral root formation5.97E-03
124GO:0051865: protein autoubiquitination6.25E-03
125GO:0006783: heme biosynthetic process6.25E-03
126GO:0009753: response to jasmonic acid6.37E-03
127GO:0048527: lateral root development6.57E-03
128GO:1900426: positive regulation of defense response to bacterium7.03E-03
129GO:2000280: regulation of root development7.03E-03
130GO:0009862: systemic acquired resistance, salicylic acid mediated signaling pathway7.03E-03
131GO:0009641: shade avoidance7.82E-03
132GO:0010215: cellulose microfibril organization7.82E-03
133GO:0006032: chitin catabolic process7.82E-03
134GO:0006995: cellular response to nitrogen starvation7.82E-03
135GO:0006887: exocytosis8.57E-03
136GO:0009684: indoleacetic acid biosynthetic process8.66E-03
137GO:0000038: very long-chain fatty acid metabolic process8.66E-03
138GO:0009698: phenylpropanoid metabolic process8.66E-03
139GO:0072593: reactive oxygen species metabolic process8.66E-03
140GO:0042542: response to hydrogen peroxide8.93E-03
141GO:0046686: response to cadmium ion9.32E-03
142GO:0006890: retrograde vesicle-mediated transport, Golgi to ER9.52E-03
143GO:0000266: mitochondrial fission9.52E-03
144GO:0002213: defense response to insect9.52E-03
145GO:0010105: negative regulation of ethylene-activated signaling pathway9.52E-03
146GO:0006807: nitrogen compound metabolic process1.04E-02
147GO:0031347: regulation of defense response1.13E-02
148GO:0042787: protein ubiquitination involved in ubiquitin-dependent protein catabolic process1.13E-02
149GO:0055114: oxidation-reduction process1.19E-02
150GO:0070588: calcium ion transmembrane transport1.23E-02
151GO:0006486: protein glycosylation1.26E-02
152GO:0009833: plant-type primary cell wall biogenesis1.33E-02
153GO:0080147: root hair cell development1.43E-02
154GO:2000377: regulation of reactive oxygen species metabolic process1.43E-02
155GO:0007169: transmembrane receptor protein tyrosine kinase signaling pathway1.48E-02
156GO:0016192: vesicle-mediated transport1.51E-02
157GO:0009695: jasmonic acid biosynthetic process1.53E-02
158GO:0044550: secondary metabolite biosynthetic process1.58E-02
159GO:0048278: vesicle docking1.64E-02
160GO:0009737: response to abscisic acid1.70E-02
161GO:0009814: defense response, incompatible interaction1.75E-02
162GO:0016226: iron-sulfur cluster assembly1.75E-02
163GO:0031348: negative regulation of defense response1.75E-02
164GO:0006886: intracellular protein transport1.85E-02
165GO:0006012: galactose metabolic process1.86E-02
166GO:0071215: cellular response to abscisic acid stimulus1.86E-02
167GO:0009411: response to UV1.86E-02
168GO:0009742: brassinosteroid mediated signaling pathway1.90E-02
169GO:0010091: trichome branching1.97E-02
170GO:0009789: positive regulation of abscisic acid-activated signaling pathway2.09E-02
171GO:0042147: retrograde transport, endosome to Golgi2.09E-02
172GO:0009409: response to cold2.13E-02
173GO:0042631: cellular response to water deprivation2.21E-02
174GO:0000271: polysaccharide biosynthetic process2.21E-02
175GO:0042391: regulation of membrane potential2.21E-02
176GO:0000413: protein peptidyl-prolyl isomerization2.21E-02
177GO:0016042: lipid catabolic process2.24E-02
178GO:0046323: glucose import2.33E-02
179GO:0008360: regulation of cell shape2.33E-02
180GO:0006885: regulation of pH2.33E-02
181GO:0006520: cellular amino acid metabolic process2.33E-02
182GO:0045489: pectin biosynthetic process2.33E-02
183GO:0006662: glycerol ether metabolic process2.33E-02
184GO:0010197: polar nucleus fusion2.33E-02
185GO:0009845: seed germination2.43E-02
186GO:0061025: membrane fusion2.45E-02
187GO:0009646: response to absence of light2.45E-02
188GO:0048544: recognition of pollen2.45E-02
189GO:0009851: auxin biosynthetic process2.58E-02
190GO:0008654: phospholipid biosynthetic process2.58E-02
191GO:0008152: metabolic process2.62E-02
192GO:0006891: intra-Golgi vesicle-mediated transport2.71E-02
193GO:0010193: response to ozone2.71E-02
194GO:0016032: viral process2.84E-02
195GO:0019761: glucosinolate biosynthetic process2.84E-02
196GO:0040008: regulation of growth2.96E-02
197GO:0030163: protein catabolic process2.97E-02
198GO:0006904: vesicle docking involved in exocytosis3.24E-02
199GO:0006508: proteolysis3.37E-02
200GO:0001666: response to hypoxia3.52E-02
201GO:0006470: protein dephosphorylation3.55E-02
202GO:0009607: response to biotic stimulus3.66E-02
203GO:0042128: nitrate assimilation3.80E-02
204GO:0006906: vesicle fusion3.80E-02
205GO:0071555: cell wall organization3.88E-02
206GO:0015995: chlorophyll biosynthetic process3.95E-02
207GO:0006950: response to stress3.95E-02
208GO:0016049: cell growth4.10E-02
209GO:0030244: cellulose biosynthetic process4.25E-02
210GO:0007165: signal transduction4.35E-02
211GO:0009826: unidimensional cell growth4.60E-02
212GO:0010043: response to zinc ion4.71E-02
213GO:0010119: regulation of stomatal movement4.71E-02
214GO:0006865: amino acid transport4.86E-02
RankGO TermAdjusted P value
1GO:0102983: xylogalacturonan beta-1,3-xylosyltransferase activity0.00E+00
2GO:0016603: glutaminyl-peptide cyclotransferase activity0.00E+00
3GO:0005365: myo-inositol transmembrane transporter activity0.00E+00
4GO:0004168: dolichol kinase activity0.00E+00
5GO:0015576: sorbitol transmembrane transporter activity0.00E+00
6GO:0015370: solute:sodium symporter activity0.00E+00
7GO:0050269: coniferyl-aldehyde dehydrogenase activity0.00E+00
8GO:0003837: beta-ureidopropionase activity0.00E+00
9GO:0015591: D-ribose transmembrane transporter activity0.00E+00
10GO:0015148: D-xylose transmembrane transporter activity0.00E+00
11GO:0010298: dihydrocamalexic acid decarboxylase activity0.00E+00
12GO:0015575: mannitol transmembrane transporter activity0.00E+00
13GO:0004364: glutathione transferase activity1.66E-04
14GO:0004675: transmembrane receptor protein serine/threonine kinase activity1.77E-04
15GO:0008320: protein transmembrane transporter activity2.07E-04
16GO:0043295: glutathione binding2.07E-04
17GO:0004714: transmembrane receptor protein tyrosine kinase activity2.62E-04
18GO:0005509: calcium ion binding2.69E-04
19GO:2001227: quercitrin binding2.72E-04
20GO:0004425: indole-3-glycerol-phosphate synthase activity2.72E-04
21GO:1901149: salicylic acid binding2.72E-04
22GO:0080023: 3R-hydroxyacyl-CoA dehydratase activity2.72E-04
23GO:0015168: glycerol transmembrane transporter activity2.72E-04
24GO:0004325: ferrochelatase activity2.72E-04
25GO:2001147: camalexin binding2.72E-04
26GO:0004149: dihydrolipoyllysine-residue succinyltransferase activity2.72E-04
27GO:0031127: alpha-(1,2)-fucosyltransferase activity2.72E-04
28GO:0016301: kinase activity2.78E-04
29GO:0031625: ubiquitin protein ligase binding3.46E-04
30GO:0047364: desulfoglucosinolate sulfotransferase activity5.99E-04
31GO:0004061: arylformamidase activity5.99E-04
32GO:0004338: glucan exo-1,3-beta-glucosidase activity5.99E-04
33GO:0047209: coniferyl-alcohol glucosyltransferase activity5.99E-04
34GO:0004566: beta-glucuronidase activity5.99E-04
35GO:0005516: calmodulin binding6.09E-04
36GO:0016595: glutamate binding9.72E-04
37GO:0004049: anthranilate synthase activity9.72E-04
38GO:0004838: L-tyrosine:2-oxoglutarate aminotransferase activity9.72E-04
39GO:0016174: NAD(P)H oxidase activity9.72E-04
40GO:0004190: aspartic-type endopeptidase activity1.01E-03
41GO:0016709: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, NAD(P)H as one donor, and incorporation of one atom of oxygen1.07E-03
42GO:0005354: galactose transmembrane transporter activity1.39E-03
43GO:0016656: monodehydroascorbate reductase (NADH) activity1.39E-03
44GO:0015204: urea transmembrane transporter activity1.86E-03
45GO:0016298: lipase activity2.06E-03
46GO:0004356: glutamate-ammonia ligase activity2.37E-03
47GO:0015145: monosaccharide transmembrane transporter activity2.37E-03
48GO:0005546: phosphatidylinositol-4,5-bisphosphate binding2.37E-03
49GO:0005496: steroid binding2.37E-03
50GO:0004605: phosphatidate cytidylyltransferase activity2.93E-03
51GO:0004029: aldehyde dehydrogenase (NAD) activity2.93E-03
52GO:0035252: UDP-xylosyltransferase activity2.93E-03
53GO:0033743: peptide-methionine (R)-S-oxide reductase activity3.52E-03
54GO:0004012: phospholipid-translocating ATPase activity3.52E-03
55GO:0004656: procollagen-proline 4-dioxygenase activity3.52E-03
56GO:0008107: galactoside 2-alpha-L-fucosyltransferase activity4.15E-03
57GO:0004034: aldose 1-epimerase activity4.82E-03
58GO:0004683: calmodulin-dependent protein kinase activity5.13E-03
59GO:0003843: 1,3-beta-D-glucan synthase activity5.52E-03
60GO:0004630: phospholipase D activity5.52E-03
61GO:0070290: N-acylphosphatidylethanolamine-specific phospholipase D activity5.52E-03
62GO:0004674: protein serine/threonine kinase activity6.00E-03
63GO:0008417: fucosyltransferase activity6.25E-03
64GO:0016207: 4-coumarate-CoA ligase activity6.25E-03
65GO:0071949: FAD binding6.25E-03
66GO:0019825: oxygen binding6.87E-03
67GO:0004028: 3-chloroallyl aldehyde dehydrogenase activity7.03E-03
68GO:0004568: chitinase activity7.82E-03
69GO:0008047: enzyme activator activity7.82E-03
70GO:0004713: protein tyrosine kinase activity7.82E-03
71GO:0005543: phospholipid binding8.66E-03
72GO:0008794: arsenate reductase (glutaredoxin) activity8.66E-03
73GO:0020037: heme binding9.56E-03
74GO:0005262: calcium channel activity1.04E-02
75GO:0005388: calcium-transporting ATPase activity1.04E-02
76GO:0004022: alcohol dehydrogenase (NAD) activity1.04E-02
77GO:0015662: ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism1.04E-02
78GO:0015293: symporter activity1.05E-02
79GO:0042973: glucan endo-1,3-beta-D-glucosidase activity1.13E-02
80GO:0005506: iron ion binding1.23E-02
81GO:0030552: cAMP binding1.23E-02
82GO:0030553: cGMP binding1.23E-02
83GO:0008061: chitin binding1.23E-02
84GO:0008146: sulfotransferase activity1.23E-02
85GO:0003954: NADH dehydrogenase activity1.43E-02
86GO:0061630: ubiquitin protein ligase activity1.51E-02
87GO:0005216: ion channel activity1.53E-02
88GO:0033612: receptor serine/threonine kinase binding1.64E-02
89GO:0015035: protein disulfide oxidoreductase activity1.85E-02
90GO:0016746: transferase activity, transferring acyl groups1.85E-02
91GO:0016760: cellulose synthase (UDP-forming) activity1.86E-02
92GO:0008810: cellulase activity1.86E-02
93GO:0003727: single-stranded RNA binding1.97E-02
94GO:0047134: protein-disulfide reductase activity2.09E-02
95GO:0030246: carbohydrate binding2.13E-02
96GO:0005249: voltage-gated potassium channel activity2.21E-02
97GO:0030551: cyclic nucleotide binding2.21E-02
98GO:0005451: monovalent cation:proton antiporter activity2.21E-02
99GO:0005524: ATP binding2.22E-02
100GO:0005507: copper ion binding2.32E-02
101GO:0008080: N-acetyltransferase activity2.33E-02
102GO:0004791: thioredoxin-disulfide reductase activity2.45E-02
103GO:0016853: isomerase activity2.45E-02
104GO:0005355: glucose transmembrane transporter activity2.45E-02
105GO:0015299: solute:proton antiporter activity2.45E-02
106GO:0015385: sodium:proton antiporter activity2.97E-02
107GO:0016671: oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor2.97E-02
108GO:0016759: cellulose synthase activity3.10E-02
109GO:0008483: transaminase activity3.24E-02
110GO:0016597: amino acid binding3.38E-02
111GO:0008194: UDP-glycosyltransferase activity3.47E-02
112GO:0009931: calcium-dependent protein serine/threonine kinase activity3.80E-02
113GO:0004806: triglyceride lipase activity3.95E-02
114GO:0030247: polysaccharide binding3.95E-02
115GO:0016757: transferase activity, transferring glycosyl groups4.06E-02
116GO:0004222: metalloendopeptidase activity4.55E-02
117GO:0030145: manganese ion binding4.71E-02
118GO:0050897: cobalt ion binding4.71E-02
RankGO TermAdjusted P value
1GO:0005886: plasma membrane2.59E-14
2GO:0016021: integral component of membrane6.93E-07
3GO:0005618: cell wall1.51E-04
4GO:0045252: oxoglutarate dehydrogenase complex2.72E-04
5GO:0005789: endoplasmic reticulum membrane2.84E-04
6GO:0005783: endoplasmic reticulum3.93E-04
7GO:0005950: anthranilate synthase complex5.99E-04
8GO:0031304: intrinsic component of mitochondrial inner membrane5.99E-04
9GO:0005901: caveola5.99E-04
10GO:0030134: ER to Golgi transport vesicle5.99E-04
11GO:0005794: Golgi apparatus8.42E-04
12GO:0070062: extracellular exosome1.39E-03
13GO:0030658: transport vesicle membrane1.39E-03
14GO:0009506: plasmodesma1.43E-03
15GO:0005801: cis-Golgi network3.52E-03
16GO:0032580: Golgi cisterna membrane3.65E-03
17GO:0033116: endoplasmic reticulum-Golgi intermediate compartment membrane4.15E-03
18GO:0000148: 1,3-beta-D-glucan synthase complex5.52E-03
19GO:0019005: SCF ubiquitin ligase complex5.68E-03
20GO:0016020: membrane6.88E-03
21GO:0048046: apoplast7.37E-03
22GO:0005740: mitochondrial envelope7.82E-03
23GO:0005765: lysosomal membrane8.66E-03
24GO:0046658: anchored component of plasma membrane8.84E-03
25GO:0005829: cytosol1.01E-02
26GO:0031012: extracellular matrix1.04E-02
27GO:0030176: integral component of endoplasmic reticulum membrane1.23E-02
28GO:0005741: mitochondrial outer membrane1.64E-02
29GO:0005773: vacuole1.76E-02
30GO:0005737: cytoplasm2.20E-02
31GO:0009504: cell plate2.58E-02
32GO:0031225: anchored component of membrane2.65E-02
33GO:0005802: trans-Golgi network2.76E-02
34GO:0000145: exocyst2.84E-02
35GO:0005887: integral component of plasma membrane3.40E-02
36GO:0005788: endoplasmic reticulum lumen3.66E-02
37GO:0000151: ubiquitin ligase complex4.25E-02
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Gene type



Gene DE type