Gene type: Transcription factor Metabolic gene Others DE type: Up Down Slightly_up Slightly_down Mixeded Others

GO Enrichment Analysis of Co-expressed Genes with

AT3G54850

GO-BP
GO-MF
GO-CC
RankGO TermAdjusted P value
1GO:0010111: glyoxysome organization0.00E+00
2GO:0060154: cellular process regulating host cell cycle in response to virus0.00E+00
3GO:0010401: pectic galactan metabolic process0.00E+00
4GO:0009991: response to extracellular stimulus0.00E+00
5GO:0009738: abscisic acid-activated signaling pathway3.57E-06
6GO:0009723: response to ethylene9.48E-06
7GO:0051603: proteolysis involved in cellular protein catabolic process2.17E-05
8GO:0000303: response to superoxide2.30E-05
9GO:0034214: protein hexamerization2.30E-05
10GO:0010201: response to continuous far red light stimulus by the high-irradiance response system2.30E-05
11GO:0048508: embryonic meristem development2.30E-05
12GO:0016337: single organismal cell-cell adhesion2.30E-05
13GO:0052541: plant-type cell wall cellulose metabolic process5.89E-05
14GO:0030010: establishment of cell polarity5.89E-05
15GO:0009945: radial axis specification5.89E-05
16GO:0015012: heparan sulfate proteoglycan biosynthetic process5.89E-05
17GO:0019395: fatty acid oxidation5.89E-05
18GO:0010608: posttranscriptional regulation of gene expression5.89E-05
19GO:0006024: glycosaminoglycan biosynthetic process5.89E-05
20GO:0009789: positive regulation of abscisic acid-activated signaling pathway7.58E-05
21GO:0009737: response to abscisic acid1.16E-04
22GO:0006809: nitric oxide biosynthetic process1.55E-04
23GO:0072583: clathrin-dependent endocytosis1.55E-04
24GO:2000114: regulation of establishment of cell polarity1.55E-04
25GO:0006624: vacuolar protein processing1.55E-04
26GO:0048527: lateral root development2.61E-04
27GO:0006665: sphingolipid metabolic process2.73E-04
28GO:0009867: jasmonic acid mediated signaling pathway2.87E-04
29GO:0010358: leaf shaping3.37E-04
30GO:0009920: cell plate formation involved in plant-type cell wall biogenesis3.37E-04
31GO:0045899: positive regulation of RNA polymerase II transcriptional preinitiation complex assembly3.37E-04
32GO:0000911: cytokinesis by cell plate formation4.04E-04
33GO:0009942: longitudinal axis specification4.04E-04
34GO:0006614: SRP-dependent cotranslational protein targeting to membrane4.74E-04
35GO:0009610: response to symbiotic fungus4.74E-04
36GO:0006955: immune response4.74E-04
37GO:0046470: phosphatidylcholine metabolic process4.74E-04
38GO:0048766: root hair initiation5.46E-04
39GO:0006605: protein targeting5.46E-04
40GO:0009880: embryonic pattern specification6.21E-04
41GO:0030968: endoplasmic reticulum unfolded protein response6.21E-04
42GO:0009862: systemic acquired resistance, salicylic acid mediated signaling pathway7.77E-04
43GO:0042761: very long-chain fatty acid biosynthetic process7.77E-04
44GO:2000280: regulation of root development7.77E-04
45GO:0010629: negative regulation of gene expression8.59E-04
46GO:0019538: protein metabolic process8.59E-04
47GO:0009845: seed germination9.27E-04
48GO:0010072: primary shoot apical meristem specification9.42E-04
49GO:0072593: reactive oxygen species metabolic process9.42E-04
50GO:0009790: embryo development9.96E-04
51GO:0012501: programmed cell death1.03E-03
52GO:0000266: mitochondrial fission1.03E-03
53GO:0006511: ubiquitin-dependent protein catabolic process1.06E-03
54GO:0010102: lateral root morphogenesis1.12E-03
55GO:0009887: animal organ morphogenesis1.20E-03
56GO:0016567: protein ubiquitination1.35E-03
57GO:2000377: regulation of reactive oxygen species metabolic process1.49E-03
58GO:0016575: histone deacetylation1.59E-03
59GO:0009695: jasmonic acid biosynthetic process1.59E-03
60GO:0061077: chaperone-mediated protein folding1.70E-03
61GO:0031408: oxylipin biosynthetic process1.70E-03
62GO:0030433: ubiquitin-dependent ERAD pathway1.80E-03
63GO:0006970: response to osmotic stress1.91E-03
64GO:0010091: trichome branching2.02E-03
65GO:0010051: xylem and phloem pattern formation2.24E-03
66GO:0010087: phloem or xylem histogenesis2.24E-03
67GO:0010200: response to chitin2.27E-03
68GO:0010154: fruit development2.36E-03
69GO:0010197: polar nucleus fusion2.36E-03
70GO:0006623: protein targeting to vacuole2.60E-03
71GO:0010193: response to ozone2.72E-03
72GO:0006635: fatty acid beta-oxidation2.72E-03
73GO:0016032: viral process2.84E-03
74GO:0030163: protein catabolic process2.96E-03
75GO:0006464: cellular protein modification process3.09E-03
76GO:0048364: root development3.35E-03
77GO:0009615: response to virus3.48E-03
78GO:0009788: negative regulation of abscisic acid-activated signaling pathway3.62E-03
79GO:0009816: defense response to bacterium, incompatible interaction3.62E-03
80GO:0009873: ethylene-activated signaling pathway4.14E-03
81GO:0009817: defense response to fungus, incompatible interaction4.17E-03
82GO:0008219: cell death4.17E-03
83GO:0006351: transcription, DNA-templated4.43E-03
84GO:0010119: regulation of stomatal movement4.60E-03
85GO:0007568: aging4.60E-03
86GO:0006631: fatty acid metabolic process5.52E-03
87GO:0009611: response to wounding5.80E-03
88GO:0042538: hyperosmotic salinity response6.83E-03
89GO:0006486: protein glycosylation7.18E-03
90GO:0006508: proteolysis7.18E-03
91GO:0009736: cytokinin-activated signaling pathway7.18E-03
92GO:0006417: regulation of translation7.70E-03
93GO:0009626: plant-type hypersensitive response8.42E-03
94GO:0051726: regulation of cell cycle9.56E-03
95GO:0006355: regulation of transcription, DNA-templated1.07E-02
96GO:0009414: response to water deprivation1.12E-02
97GO:0006979: response to oxidative stress1.16E-02
98GO:0010150: leaf senescence1.35E-02
99GO:0009826: unidimensional cell growth1.79E-02
100GO:0006886: intracellular protein transport2.49E-02
101GO:0016042: lipid catabolic process2.77E-02
102GO:0009751: response to salicylic acid2.80E-02
103GO:0009753: response to jasmonic acid2.97E-02
104GO:0009734: auxin-activated signaling pathway3.61E-02
105GO:0009651: response to salt stress3.86E-02
106GO:0009735: response to cytokinin3.99E-02
107GO:0045893: positive regulation of transcription, DNA-templated4.69E-02
RankGO TermAdjusted P value
1GO:0034450: ubiquitin-ubiquitin ligase activity2.30E-05
2GO:0003988: acetyl-CoA C-acyltransferase activity5.89E-05
3GO:0005047: signal recognition particle binding1.04E-04
4GO:0004197: cysteine-type endopeptidase activity1.23E-04
5GO:0005546: phosphatidylinositol-4,5-bisphosphate binding2.73E-04
6GO:0036402: proteasome-activating ATPase activity3.37E-04
7GO:0003924: GTPase activity3.53E-04
8GO:0003950: NAD+ ADP-ribosyltransferase activity4.04E-04
9GO:0008113: peptide-methionine (S)-S-oxide reductase activity4.04E-04
10GO:0004620: phospholipase activity4.74E-04
11GO:0008234: cysteine-type peptidase activity5.47E-04
12GO:0016887: ATPase activity6.14E-04
13GO:0032041: NAD-dependent histone deacetylase activity (H3-K14 specific)6.21E-04
14GO:0070290: N-acylphosphatidylethanolamine-specific phospholipase D activity6.21E-04
15GO:0004630: phospholipase D activity6.21E-04
16GO:0016874: ligase activity6.57E-04
17GO:0004175: endopeptidase activity1.20E-03
18GO:0017025: TBP-class protein binding1.30E-03
19GO:0004407: histone deacetylase activity1.49E-03
20GO:0005528: FK506 binding1.49E-03
21GO:0043424: protein histidine kinase binding1.59E-03
22GO:0035251: UDP-glucosyltransferase activity1.70E-03
23GO:0030276: clathrin binding2.36E-03
24GO:0005515: protein binding2.51E-03
25GO:0042803: protein homodimerization activity2.74E-03
26GO:0004702: signal transducer, downstream of receptor, with serine/threonine kinase activity3.22E-03
27GO:0005096: GTPase activator activity4.32E-03
28GO:0003755: peptidyl-prolyl cis-trans isomerase activity6.49E-03
29GO:0005525: GTP binding9.32E-03
30GO:0005509: calcium ion binding1.06E-02
31GO:0003700: transcription factor activity, sequence-specific DNA binding1.28E-02
32GO:0043565: sequence-specific DNA binding1.37E-02
33GO:0008017: microtubule binding1.39E-02
34GO:0004842: ubiquitin-protein transferase activity1.59E-02
35GO:0046982: protein heterodimerization activity1.81E-02
36GO:0004871: signal transducer activity2.52E-02
37GO:0016757: transferase activity, transferring glycosyl groups3.92E-02
38GO:0000166: nucleotide binding4.25E-02
39GO:0016740: transferase activity4.90E-02
RankGO TermAdjusted P value
1GO:0005785: signal recognition particle receptor complex0.00E+00
2GO:0000323: lytic vacuole3.79E-07
3GO:0045334: clathrin-coated endocytic vesicle2.30E-05
4GO:0016363: nuclear matrix4.04E-04
5GO:0031597: cytosolic proteasome complex4.04E-04
6GO:0031595: nuclear proteasome complex4.74E-04
7GO:0009514: glyoxysome6.21E-04
8GO:0005786: signal recognition particle, endoplasmic reticulum targeting6.21E-04
9GO:0005773: vacuole6.55E-04
10GO:0030665: clathrin-coated vesicle membrane7.77E-04
11GO:0008540: proteasome regulatory particle, base subcomplex7.77E-04
12GO:0017119: Golgi transport complex8.59E-04
13GO:0005783: endoplasmic reticulum1.05E-03
14GO:0005764: lysosome1.20E-03
15GO:0030136: clathrin-coated vesicle2.13E-03
16GO:0000139: Golgi membrane2.55E-03
17GO:0009504: cell plate2.60E-03
18GO:0005789: endoplasmic reticulum membrane2.96E-03
19GO:0000151: ubiquitin ligase complex4.17E-03
20GO:0031902: late endosome membrane5.52E-03
21GO:0005777: peroxisome6.51E-03
22GO:0031966: mitochondrial membrane6.83E-03
23GO:0000502: proteasome complex7.18E-03
24GO:0005834: heterotrimeric G-protein complex8.42E-03
25GO:0005802: trans-Golgi network9.08E-03
26GO:0005768: endosome1.03E-02
27GO:0005886: plasma membrane1.07E-02
28GO:0009524: phragmoplast1.11E-02
29GO:0005615: extracellular space1.46E-02
30GO:0080008: Cul4-RING E3 ubiquitin ligase complex1.96E-02
31GO:0005874: microtubule2.09E-02
32GO:0005737: cytoplasm2.11E-02
33GO:0005887: integral component of plasma membrane3.51E-02
34GO:0005774: vacuolar membrane3.99E-02
35GO:0005829: cytosol4.17E-02
<
Gene type



Gene DE type