co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT3G54720

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0045176: apical protein localization	0.00E+00
2	GO:0090627: plant epidermal cell differentiation	0.00E+00
3	GO:0000372: Group I intron splicing	0.00E+00
4	GO:0006003: fructose 2,6-bisphosphate metabolic process	0.00E+00
5	GO:0015822: ornithine transport	0.00E+00
6	GO:0090706: specification of plant organ position	0.00E+00
7	GO:0006780: uroporphyrinogen III biosynthetic process	0.00E+00
8	GO:0016126: sterol biosynthetic process	4.95E-05
9	GO:0000373: Group II intron splicing	6.45E-05
10	GO:0010480: microsporocyte differentiation	8.09E-05
11	GO:0042547: cell wall modification involved in multidimensional cell growth	8.09E-05
12	GO:0034628: 'de novo' NAD biosynthetic process from aspartate	8.09E-05
13	GO:0043609: regulation of carbon utilization	8.09E-05
14	GO:0000066: mitochondrial ornithine transport	8.09E-05
15	GO:0010450: inflorescence meristem growth	8.09E-05
16	GO:0015936: coenzyme A metabolic process	8.09E-05
17	GO:0016119: carotene metabolic process	8.09E-05
18	GO:0051176: positive regulation of sulfur metabolic process	3.24E-04
19	GO:0045165: cell fate commitment	3.24E-04
20	GO:0031022: nuclear migration along microfilament	3.24E-04
21	GO:0006000: fructose metabolic process	3.24E-04
22	GO:0051639: actin filament network formation	4.66E-04
23	GO:0048825: cotyledon development	5.54E-04
24	GO:0019287: isopentenyl diphosphate biosynthetic process, mevalonate pathway	6.21E-04
25	GO:0051764: actin crosslink formation	6.21E-04
26	GO:0006085: acetyl-CoA biosynthetic process	6.21E-04
27	GO:0009904: chloroplast accumulation movement	7.86E-04
28	GO:1902183: regulation of shoot apical meristem development	7.86E-04
29	GO:0016123: xanthophyll biosynthetic process	7.86E-04
30	GO:0009435: NAD biosynthetic process	7.86E-04
31	GO:0010158: abaxial cell fate specification	7.86E-04
32	GO:0009913: epidermal cell differentiation	9.59E-04
33	GO:0048827: phyllome development	9.59E-04
34	GO:0042549: photosystem II stabilization	9.59E-04
35	GO:0000741: karyogamy	9.59E-04
36	GO:0015995: chlorophyll biosynthetic process	9.86E-04
37	GO:0009903: chloroplast avoidance movement	1.14E-03
38	GO:0010067: procambium histogenesis	1.14E-03
39	GO:0051510: regulation of unidimensional cell growth	1.34E-03
40	GO:1900056: negative regulation of leaf senescence	1.34E-03
41	GO:0048437: floral organ development	1.34E-03
42	GO:0034968: histone lysine methylation	1.54E-03
43	GO:0010093: specification of floral organ identity	1.76E-03
44	GO:0006002: fructose 6-phosphate metabolic process	1.76E-03
45	GO:2000024: regulation of leaf development	1.98E-03
46	GO:0006754: ATP biosynthetic process	1.98E-03
47	GO:0009060: aerobic respiration	1.98E-03
48	GO:0006098: pentose-phosphate shunt	1.98E-03
49	GO:0016571: histone methylation	2.22E-03
50	GO:0006779: porphyrin-containing compound biosynthetic process	2.22E-03
51	GO:0010380: regulation of chlorophyll biosynthetic process	2.22E-03
52	GO:0007165: signal transduction	2.32E-03
53	GO:0006782: protoporphyrinogen IX biosynthetic process	2.46E-03
54	GO:0006629: lipid metabolic process	2.70E-03
55	GO:0048229: gametophyte development	2.71E-03
56	GO:0010229: inflorescence development	3.24E-03
57	GO:0018107: peptidyl-threonine phosphorylation	3.24E-03
58	GO:0009718: anthocyanin-containing compound biosynthetic process	3.24E-03
59	GO:0010075: regulation of meristem growth	3.24E-03
60	GO:0006094: gluconeogenesis	3.24E-03
61	GO:0010223: secondary shoot formation	3.52E-03
62	GO:0010540: basipetal auxin transport	3.52E-03
63	GO:0009934: regulation of meristem structural organization	3.52E-03
64	GO:0009933: meristem structural organization	3.52E-03
65	GO:0006636: unsaturated fatty acid biosynthetic process	4.10E-03
66	GO:0019762: glucosinolate catabolic process	4.10E-03
67	GO:0009944: polarity specification of adaxial/abaxial axis	4.40E-03
68	GO:0051017: actin filament bundle assembly	4.40E-03
69	GO:0006289: nucleotide-excision repair	4.40E-03
70	GO:0008299: isoprenoid biosynthetic process	4.70E-03
71	GO:0006633: fatty acid biosynthetic process	5.18E-03
72	GO:0009814: defense response, incompatible interaction	5.34E-03
73	GO:0016226: iron-sulfur cluster assembly	5.34E-03
74	GO:0080092: regulation of pollen tube growth	5.34E-03
75	GO:0071369: cellular response to ethylene stimulus	5.67E-03
76	GO:0001944: vasculature development	5.67E-03
77	GO:0010089: xylem development	6.01E-03
78	GO:0015991: ATP hydrolysis coupled proton transport	6.70E-03
79	GO:0048653: anther development	6.70E-03
80	GO:0010197: polar nucleus fusion	7.06E-03
81	GO:0009741: response to brassinosteroid	7.06E-03
82	GO:0010154: fruit development	7.06E-03
83	GO:0007018: microtubule-based movement	7.42E-03
84	GO:0009791: post-embryonic development	7.79E-03
85	GO:0016032: viral process	8.56E-03
86	GO:0071805: potassium ion transmembrane transport	9.75E-03
87	GO:0001666: response to hypoxia	1.06E-02
88	GO:0009911: positive regulation of flower development	1.06E-02
89	GO:0007169: transmembrane receptor protein tyrosine kinase signaling pathway	1.13E-02
90	GO:0046777: protein autophosphorylation	1.17E-02
91	GO:0006499: N-terminal protein myristoylation	1.37E-02
92	GO:0006811: ion transport	1.37E-02
93	GO:0009910: negative regulation of flower development	1.41E-02
94	GO:0009631: cold acclimation	1.41E-02
95	GO:0006839: mitochondrial transport	1.65E-02
96	GO:0006397: mRNA processing	1.69E-02
97	GO:0009753: response to jasmonic acid	1.73E-02
98	GO:0008152: metabolic process	1.78E-02
99	GO:0006855: drug transmembrane transport	2.01E-02
100	GO:0006813: potassium ion transport	2.23E-02
101	GO:0006468: protein phosphorylation	2.25E-02
102	GO:0005975: carbohydrate metabolic process	2.32E-02
103	GO:0009909: regulation of flower development	2.40E-02
104	GO:0006096: glycolytic process	2.51E-02
105	GO:0009416: response to light stimulus	2.87E-02
106	GO:0018105: peptidyl-serine phosphorylation	2.93E-02
107	GO:0009742: brassinosteroid mediated signaling pathway	2.99E-02
108	GO:0035556: intracellular signal transduction	3.03E-02
109	GO:0045893: positive regulation of transcription, DNA-templated	3.29E-02
110	GO:0009845: seed germination	3.56E-02
111	GO:0055085: transmembrane transport	3.64E-02
112	GO:0007623: circadian rhythm	4.23E-02
113	GO:0010150: leaf senescence	4.23E-02
114	GO:0045490: pectin catabolic process	4.23E-02
115	GO:0043161: proteasome-mediated ubiquitin-dependent protein catabolic process	4.58E-02
116	GO:0007166: cell surface receptor signaling pathway	4.65E-02
117	GO:0010468: regulation of gene expression	4.80E-02

Rank	GO Term	Adjusted P value
1	GO:0004331: fructose-2,6-bisphosphate 2-phosphatase activity	0.00E+00
2	GO:0003873: 6-phosphofructo-2-kinase activity	0.00E+00
3	GO:0004852: uroporphyrinogen-III synthase activity	0.00E+00
4	GO:0008987: quinolinate synthetase A activity	0.00E+00
5	GO:0004506: squalene monooxygenase activity	6.24E-06
6	GO:0005524: ATP binding	3.46E-05
7	GO:0050139: nicotinate-N-glucosyltransferase activity	8.09E-05
8	GO:0046912: transferase activity, transferring acyl groups, acyl groups converted into alkyl on transfer	8.09E-05
9	GO:0004420: hydroxymethylglutaryl-CoA reductase (NADPH) activity	8.09E-05
10	GO:0042282: hydroxymethylglutaryl-CoA reductase activity	8.09E-05
11	GO:0010291: carotene beta-ring hydroxylase activity	1.93E-04
12	GO:0004312: fatty acid synthase activity	1.93E-04
13	GO:0000064: L-ornithine transmembrane transporter activity	1.93E-04
14	GO:0010429: methyl-CpNpN binding	3.24E-04
15	GO:0004315: 3-oxoacyl-[acyl-carrier-protein] synthase activity	3.24E-04
16	GO:0010428: methyl-CpNpG binding	3.24E-04
17	GO:0008253: 5'-nucleotidase activity	3.24E-04
18	GO:0003878: ATP citrate synthase activity	4.66E-04
19	GO:0016301: kinase activity	5.61E-04
20	GO:0070628: proteasome binding	6.21E-04
21	GO:0008017: microtubule binding	7.83E-04
22	GO:0004674: protein serine/threonine kinase activity	8.88E-04
23	GO:0031593: polyubiquitin binding	9.59E-04
24	GO:2001070: starch binding	9.59E-04
25	GO:0004332: fructose-bisphosphate aldolase activity	9.59E-04
26	GO:0042578: phosphoric ester hydrolase activity	9.59E-04
27	GO:0008553: hydrogen-exporting ATPase activity, phosphorylative mechanism	1.98E-03
28	GO:0030234: enzyme regulator activity	2.46E-03
29	GO:0008047: enzyme activator activity	2.46E-03
30	GO:0003777: microtubule motor activity	2.58E-03
31	GO:0005089: Rho guanyl-nucleotide exchange factor activity	2.71E-03
32	GO:0008327: methyl-CpG binding	2.71E-03
33	GO:0008081: phosphoric diester hydrolase activity	3.24E-03
34	GO:0004565: beta-galactosidase activity	3.24E-03
35	GO:0004190: aspartic-type endopeptidase activity	3.81E-03
36	GO:0043130: ubiquitin binding	4.40E-03
37	GO:0016829: lyase activity	4.47E-03
38	GO:0015079: potassium ion transmembrane transporter activity	4.70E-03
39	GO:0033612: receptor serine/threonine kinase binding	5.02E-03
40	GO:0004707: MAP kinase activity	5.02E-03
41	GO:0004672: protein kinase activity	5.41E-03
42	GO:0030570: pectate lyase activity	5.67E-03
43	GO:0018024: histone-lysine N-methyltransferase activity	6.35E-03
44	GO:0042626: ATPase activity, coupled to transmembrane movement of substances	7.22E-03
45	GO:0051015: actin filament binding	8.94E-03
46	GO:0003684: damaged DNA binding	9.34E-03
47	GO:0016787: hydrolase activity	9.58E-03
48	GO:0008483: transaminase activity	9.75E-03
49	GO:0050660: flavin adenine dinucleotide binding	1.02E-02
50	GO:0015238: drug transmembrane transporter activity	1.32E-02
51	GO:0003746: translation elongation factor activity	1.51E-02
52	GO:0050661: NADP binding	1.65E-02
53	GO:0042393: histone binding	1.65E-02
54	GO:0051539: 4 iron, 4 sulfur cluster binding	1.65E-02
55	GO:0035091: phosphatidylinositol binding	1.91E-02
56	GO:0005515: protein binding	2.14E-02
57	GO:0016298: lipase activity	2.29E-02
58	GO:0016887: ATPase activity	2.51E-02
59	GO:0080043: quercetin 3-O-glucosyltransferase activity	2.69E-02
60	GO:0080044: quercetin 7-O-glucosyltransferase activity	2.69E-02
61	GO:0003779: actin binding	2.81E-02
62	GO:0004675: transmembrane receptor protein serine/threonine kinase activity	4.02E-02
63	GO:0015297: antiporter activity	4.09E-02
64	GO:0008194: UDP-glycosyltransferase activity	4.58E-02

Rank	GO Term	Adjusted P value
1	GO:0005886: plasma membrane	6.98E-05
2	GO:0032432: actin filament bundle	4.66E-04
3	GO:0009346: citrate lyase complex	4.66E-04
4	GO:0030660: Golgi-associated vesicle membrane	6.21E-04
5	GO:0071556: integral component of lumenal side of endoplasmic reticulum membrane	6.21E-04
6	GO:0030529: intracellular ribonucleoprotein complex	8.44E-04
7	GO:0071458: integral component of cytoplasmic side of endoplasmic reticulum membrane	1.54E-03
8	GO:0005874: microtubule	1.58E-03
9	GO:0055028: cortical microtubule	2.46E-03
10	GO:0016324: apical plasma membrane	2.46E-03
11	GO:0005765: lysosomal membrane	2.71E-03
12	GO:0005884: actin filament	2.71E-03
13	GO:0005578: proteinaceous extracellular matrix	3.24E-03
14	GO:0009507: chloroplast	4.36E-03
15	GO:0009532: plastid stroma	5.02E-03
16	GO:0000775: chromosome, centromeric region	5.34E-03
17	GO:0005871: kinesin complex	6.35E-03
18	GO:0005770: late endosome	7.06E-03
19	GO:0016021: integral component of membrane	1.01E-02
20	GO:0031969: chloroplast membrane	1.09E-02
21	GO:0009570: chloroplast stroma	1.70E-02
22	GO:0009505: plant-type cell wall	1.82E-02
23	GO:0010008: endosome membrane	2.57E-02
24	GO:0005623: cell	3.43E-02
25	GO:0005576: extracellular region	4.66E-02