Gene type: Transcription factor Metabolic gene Others DE type: Up Down Slightly_up Slightly_down Mixeded Others

GO Enrichment Analysis of Co-expressed Genes with

AT3G54640

GO-BP
GO-MF
GO-CC
RankGO TermAdjusted P value
1GO:1902001: fatty acid transmembrane transport0.00E+00
2GO:0032260: response to jasmonic acid stimulus involved in jasmonic acid and ethylene-dependent systemic resistance0.00E+00
3GO:0017186: peptidyl-pyroglutamic acid biosynthetic process, using glutaminyl-peptide cyclotransferase0.00E+00
4GO:0043201: response to leucine0.00E+00
5GO:0045792: negative regulation of cell size0.00E+00
6GO:0080053: response to phenylalanine0.00E+00
7GO:0002376: immune system process0.00E+00
8GO:0080052: response to histidine0.00E+00
9GO:0051553: flavone biosynthetic process0.00E+00
10GO:0072722: response to amitrole0.00E+00
11GO:0006042: glucosamine biosynthetic process0.00E+00
12GO:0006592: ornithine biosynthetic process0.00E+00
13GO:1901137: carbohydrate derivative biosynthetic process0.00E+00
14GO:0009617: response to bacterium1.70E-14
15GO:0006457: protein folding8.71E-13
16GO:0034976: response to endoplasmic reticulum stress2.09E-11
17GO:0042742: defense response to bacterium2.98E-10
18GO:0009627: systemic acquired resistance8.27E-09
19GO:0000162: tryptophan biosynthetic process1.06E-07
20GO:0045454: cell redox homeostasis1.07E-06
21GO:0009697: salicylic acid biosynthetic process1.42E-06
22GO:0009751: response to salicylic acid2.40E-06
23GO:0031349: positive regulation of defense response5.43E-06
24GO:0010150: leaf senescence6.22E-06
25GO:0046686: response to cadmium ion1.41E-05
26GO:0030968: endoplasmic reticulum unfolded protein response1.63E-05
27GO:0051707: response to other organism3.29E-05
28GO:0002239: response to oomycetes4.24E-05
29GO:0009682: induced systemic resistance4.96E-05
30GO:0002237: response to molecule of bacterial origin9.14E-05
31GO:0009651: response to salt stress9.73E-05
32GO:0009759: indole glucosinolate biosynthetic process1.70E-04
33GO:0071456: cellular response to hypoxia2.25E-04
34GO:0006099: tricarboxylic acid cycle2.27E-04
35GO:0052033: pathogen-associated molecular pattern dependent induction by symbiont of host innate immune response2.30E-04
36GO:0006952: defense response2.39E-04
37GO:0009625: response to insect2.54E-04
38GO:0010200: response to chitin3.05E-04
39GO:0009609: response to symbiotic bacterium3.47E-04
40GO:0009700: indole phytoalexin biosynthetic process3.47E-04
41GO:0043687: post-translational protein modification3.47E-04
42GO:0050691: regulation of defense response to virus by host3.47E-04
43GO:0010230: alternative respiration3.47E-04
44GO:0060862: negative regulation of floral organ abscission3.47E-04
45GO:0042964: thioredoxin reduction3.47E-04
46GO:0046244: salicylic acid catabolic process3.47E-04
47GO:0010266: response to vitamin B13.47E-04
48GO:0034975: protein folding in endoplasmic reticulum3.47E-04
49GO:0000413: protein peptidyl-prolyl isomerization3.53E-04
50GO:0030091: protein repair3.76E-04
51GO:0018401: peptidyl-proline hydroxylation to 4-hydroxy-L-proline3.76E-04
52GO:0006605: protein targeting3.76E-04
53GO:0006102: isocitrate metabolic process3.76E-04
54GO:0010120: camalexin biosynthetic process4.61E-04
55GO:0000302: response to reactive oxygen species5.13E-04
56GO:0010112: regulation of systemic acquired resistance5.52E-04
57GO:0055088: lipid homeostasis7.56E-04
58GO:0015908: fatty acid transport7.56E-04
59GO:0042939: tripeptide transport7.56E-04
60GO:0033512: L-lysine catabolic process to acetyl-CoA via saccharopine7.56E-04
61GO:0030003: cellular cation homeostasis7.56E-04
62GO:0071668: plant-type cell wall assembly7.56E-04
63GO:0080151: positive regulation of salicylic acid mediated signaling pathway7.56E-04
64GO:0006979: response to oxidative stress8.32E-04
65GO:0052544: defense response by callose deposition in cell wall8.76E-04
66GO:0048281: inflorescence morphogenesis1.22E-03
67GO:0006954: inflammatory response1.22E-03
68GO:1902626: assembly of large subunit precursor of preribosome1.22E-03
69GO:0055074: calcium ion homeostasis1.22E-03
70GO:0042256: mature ribosome assembly1.22E-03
71GO:0010272: response to silver ion1.22E-03
72GO:0009969: xyloglucan biosynthetic process1.43E-03
73GO:0009409: response to cold1.68E-03
74GO:0043207: response to external biotic stimulus1.76E-03
75GO:0072334: UDP-galactose transmembrane transport1.76E-03
76GO:0033014: tetrapyrrole biosynthetic process1.76E-03
77GO:0009863: salicylic acid mediated signaling pathway1.76E-03
78GO:0000187: activation of MAPK activity1.76E-03
79GO:0010116: positive regulation of abscisic acid biosynthetic process1.76E-03
80GO:0031348: negative regulation of defense response2.33E-03
81GO:0048830: adventitious root development2.37E-03
82GO:0045088: regulation of innate immune response2.37E-03
83GO:0000460: maturation of 5.8S rRNA2.37E-03
84GO:0010600: regulation of auxin biosynthetic process2.37E-03
85GO:0019287: isopentenyl diphosphate biosynthetic process, mevalonate pathway2.37E-03
86GO:0080142: regulation of salicylic acid biosynthetic process2.37E-03
87GO:0042938: dipeptide transport2.37E-03
88GO:0080037: negative regulation of cytokinin-activated signaling pathway2.37E-03
89GO:0009306: protein secretion2.77E-03
90GO:0009846: pollen germination2.83E-03
91GO:0009753: response to jasmonic acid2.88E-03
92GO:0000304: response to singlet oxygen3.03E-03
93GO:2000762: regulation of phenylpropanoid metabolic process3.03E-03
94GO:0018279: protein N-linked glycosylation via asparagine3.03E-03
95GO:0046283: anthocyanin-containing compound metabolic process3.03E-03
96GO:0006564: L-serine biosynthetic process3.03E-03
97GO:0006486: protein glycosylation3.10E-03
98GO:0000470: maturation of LSU-rRNA3.74E-03
99GO:0060918: auxin transport3.74E-03
100GO:0047484: regulation of response to osmotic stress3.74E-03
101GO:0010942: positive regulation of cell death3.74E-03
102GO:0010256: endomembrane system organization3.74E-03
103GO:0009626: plant-type hypersensitive response4.17E-03
104GO:0006468: protein phosphorylation4.30E-03
105GO:0002229: defense response to oomycetes4.31E-03
106GO:0009620: response to fungus4.34E-03
107GO:0042372: phylloquinone biosynthetic process4.50E-03
108GO:0000054: ribosomal subunit export from nucleus4.50E-03
109GO:0009423: chorismate biosynthetic process4.50E-03
110GO:0009553: embryo sac development4.68E-03
111GO:0030163: protein catabolic process4.91E-03
112GO:0009723: response to ethylene4.92E-03
113GO:0006122: mitochondrial electron transport, ubiquinol to cytochrome c5.32E-03
114GO:1902074: response to salt5.32E-03
115GO:0009610: response to symbiotic fungus5.32E-03
116GO:0009787: regulation of abscisic acid-activated signaling pathway6.17E-03
117GO:0009819: drought recovery6.17E-03
118GO:0030162: regulation of proteolysis6.17E-03
119GO:0031540: regulation of anthocyanin biosynthetic process6.17E-03
120GO:0009615: response to virus6.23E-03
121GO:0055114: oxidation-reduction process6.39E-03
122GO:0009816: defense response to bacterium, incompatible interaction6.59E-03
123GO:0006075: (1->3)-beta-D-glucan biosynthetic process7.08E-03
124GO:0019430: removal of superoxide radicals7.08E-03
125GO:0010497: plasmodesmata-mediated intercellular transport7.08E-03
126GO:0006526: arginine biosynthetic process7.08E-03
127GO:0010204: defense response signaling pathway, resistance gene-independent7.08E-03
128GO:0009808: lignin metabolic process7.08E-03
129GO:0010208: pollen wall assembly7.08E-03
130GO:0009699: phenylpropanoid biosynthetic process7.08E-03
131GO:0006886: intracellular protein transport7.55E-03
132GO:0009414: response to water deprivation7.59E-03
133GO:0046685: response to arsenic-containing substance8.04E-03
134GO:0006783: heme biosynthetic process8.04E-03
135GO:0015780: nucleotide-sugar transport8.04E-03
136GO:0010205: photoinhibition9.03E-03
137GO:0043067: regulation of programmed cell death9.03E-03
138GO:2000280: regulation of root development9.03E-03
139GO:0009862: systemic acquired resistance, salicylic acid mediated signaling pathway9.03E-03
140GO:0010043: response to zinc ion9.43E-03
141GO:0006032: chitin catabolic process1.01E-02
142GO:0009641: shade avoidance1.01E-02
143GO:0006816: calcium ion transport1.12E-02
144GO:0009089: lysine biosynthetic process via diaminopimelate1.12E-02
145GO:0009073: aromatic amino acid family biosynthetic process1.12E-02
146GO:0000272: polysaccharide catabolic process1.12E-02
147GO:0009684: indoleacetic acid biosynthetic process1.12E-02
148GO:0006508: proteolysis1.16E-02
149GO:0006790: sulfur compound metabolic process1.23E-02
150GO:0007165: signal transduction1.26E-02
151GO:0042542: response to hydrogen peroxide1.28E-02
152GO:0009737: response to abscisic acid1.32E-02
153GO:0010075: regulation of meristem growth1.34E-02
154GO:0006541: glutamine metabolic process1.46E-02
155GO:0009934: regulation of meristem structural organization1.46E-02
156GO:0046854: phosphatidylinositol phosphorylation1.59E-02
157GO:0031347: regulation of defense response1.62E-02
158GO:0080147: root hair cell development1.85E-02
159GO:2000377: regulation of reactive oxygen species metabolic process1.85E-02
160GO:0006874: cellular calcium ion homeostasis1.98E-02
161GO:0009695: jasmonic acid biosynthetic process1.98E-02
162GO:0031408: oxylipin biosynthetic process2.12E-02
163GO:0016998: cell wall macromolecule catabolic process2.12E-02
164GO:0048316: seed development2.21E-02
165GO:0080167: response to karrikin2.24E-02
166GO:0009814: defense response, incompatible interaction2.26E-02
167GO:0030433: ubiquitin-dependent ERAD pathway2.26E-02
168GO:0019748: secondary metabolic process2.26E-02
169GO:0071215: cellular response to abscisic acid stimulus2.40E-02
170GO:0009411: response to UV2.40E-02
171GO:0001944: vasculature development2.40E-02
172GO:0006012: galactose metabolic process2.40E-02
173GO:0009611: response to wounding2.42E-02
174GO:0010584: pollen exine formation2.55E-02
175GO:0050832: defense response to fungus2.63E-02
176GO:0009789: positive regulation of abscisic acid-activated signaling pathway2.70E-02
177GO:0042631: cellular response to water deprivation2.85E-02
178GO:0010051: xylem and phloem pattern formation2.85E-02
179GO:0010118: stomatal movement2.85E-02
180GO:0008360: regulation of cell shape3.01E-02
181GO:0006520: cellular amino acid metabolic process3.01E-02
182GO:0010197: polar nucleus fusion3.01E-02
183GO:0048868: pollen tube development3.01E-02
184GO:0009646: response to absence of light3.17E-02
185GO:0006623: protein targeting to vacuole3.33E-02
186GO:0009851: auxin biosynthetic process3.33E-02
187GO:0015031: protein transport3.50E-02
188GO:0010193: response to ozone3.50E-02
189GO:0009408: response to heat3.63E-02
190GO:0016032: viral process3.67E-02
191GO:0019761: glucosinolate biosynthetic process3.67E-02
192GO:0009790: embryo development3.76E-02
193GO:1901657: glycosyl compound metabolic process3.84E-02
194GO:0006464: cellular protein modification process4.01E-02
195GO:0009567: double fertilization forming a zygote and endosperm4.01E-02
196GO:0040008: regulation of growth4.23E-02
197GO:0016126: sterol biosynthetic process4.55E-02
RankGO TermAdjusted P value
1GO:0004631: phosphomevalonate kinase activity0.00E+00
2GO:0047720: indoleacetaldoxime dehydratase activity0.00E+00
3GO:0050220: prostaglandin-E synthase activity0.00E+00
4GO:0016312: inositol bisphosphate phosphatase activity0.00E+00
5GO:0010298: dihydrocamalexic acid decarboxylase activity0.00E+00
6GO:0003980: UDP-glucose:glycoprotein glucosyltransferase activity0.00E+00
7GO:0005212: structural constituent of eye lens0.00E+00
8GO:0015165: pyrimidine nucleotide-sugar transmembrane transporter activity0.00E+00
9GO:0008777: acetylornithine deacetylase activity0.00E+00
10GO:0004360: glutamine-fructose-6-phosphate transaminase (isomerizing) activity0.00E+00
11GO:0016603: glutaminyl-peptide cyclotransferase activity0.00E+00
12GO:0016639: oxidoreductase activity, acting on the CH-NH2 group of donors, NAD or NADP as acceptor0.00E+00
13GO:0033759: flavone synthase activity0.00E+00
14GO:0050269: coniferyl-aldehyde dehydrogenase activity0.00E+00
15GO:0003756: protein disulfide isomerase activity2.17E-10
16GO:0051082: unfolded protein binding1.41E-05
17GO:0004049: anthranilate synthase activity1.92E-05
18GO:0005460: UDP-glucose transmembrane transporter activity4.24E-05
19GO:0004449: isocitrate dehydrogenase (NAD+) activity4.24E-05
20GO:0016301: kinase activity1.03E-04
21GO:0005459: UDP-galactose transmembrane transporter activity1.18E-04
22GO:0004298: threonine-type endopeptidase activity1.98E-04
23GO:0016706: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors2.11E-04
24GO:0033743: peptide-methionine (R)-S-oxide reductase activity2.30E-04
25GO:0004656: procollagen-proline 4-dioxygenase activity2.30E-04
26GO:0008320: protein transmembrane transporter activity2.99E-04
27GO:0004425: indole-3-glycerol-phosphate synthase activity3.47E-04
28GO:0097367: carbohydrate derivative binding3.47E-04
29GO:0004591: oxoglutarate dehydrogenase (succinyl-transferring) activity3.47E-04
30GO:0004048: anthranilate phosphoribosyltransferase activity3.47E-04
31GO:0048037: cofactor binding3.47E-04
32GO:0004321: fatty-acyl-CoA synthase activity3.47E-04
33GO:0008909: isochorismate synthase activity3.47E-04
34GO:0004325: ferrochelatase activity3.47E-04
35GO:0015245: fatty acid transporter activity3.47E-04
36GO:0010285: L,L-diaminopimelate aminotransferase activity3.47E-04
37GO:0004149: dihydrolipoyllysine-residue succinyltransferase activity3.47E-04
38GO:0031127: alpha-(1,2)-fucosyltransferase activity3.47E-04
39GO:0004648: O-phospho-L-serine:2-oxoglutarate aminotransferase activity3.47E-04
40GO:0005509: calcium ion binding6.71E-04
41GO:0008483: transaminase activity7.07E-04
42GO:0004775: succinate-CoA ligase (ADP-forming) activity7.56E-04
43GO:0004338: glucan exo-1,3-beta-glucosidase activity7.56E-04
44GO:0003849: 3-deoxy-7-phosphoheptulonate synthase activity7.56E-04
45GO:0042937: tripeptide transporter activity7.56E-04
46GO:0004776: succinate-CoA ligase (GDP-forming) activity7.56E-04
47GO:0047364: desulfoglucosinolate sulfotransferase activity7.56E-04
48GO:0004838: L-tyrosine:2-oxoglutarate aminotransferase activity1.22E-03
49GO:0004441: inositol-1,4-bisphosphate 1-phosphatase activity1.22E-03
50GO:0004148: dihydrolipoyl dehydrogenase activity1.22E-03
51GO:0000030: mannosyltransferase activity1.22E-03
52GO:0008233: peptidase activity1.24E-03
53GO:0004190: aspartic-type endopeptidase activity1.43E-03
54GO:0035529: NADH pyrophosphatase activity1.76E-03
55GO:0043023: ribosomal large subunit binding1.76E-03
56GO:0031418: L-ascorbic acid binding1.76E-03
57GO:0004576: oligosaccharyl transferase activity2.37E-03
58GO:0042936: dipeptide transporter activity2.37E-03
59GO:0003755: peptidyl-prolyl cis-trans isomerase activity2.58E-03
60GO:0004674: protein serine/threonine kinase activity2.63E-03
61GO:0004579: dolichyl-diphosphooligosaccharide-protein glycotransferase activity3.03E-03
62GO:0047631: ADP-ribose diphosphatase activity3.03E-03
63GO:0000210: NAD+ diphosphatase activity3.74E-03
64GO:0004029: aldehyde dehydrogenase (NAD) activity3.74E-03
65GO:0030976: thiamine pyrophosphate binding3.74E-03
66GO:0016853: isomerase activity3.75E-03
67GO:0005507: copper ion binding3.99E-03
68GO:0008441: 3'(2'),5'-bisphosphate nucleotidase activity4.50E-03
69GO:0005261: cation channel activity4.50E-03
70GO:0008113: peptide-methionine (S)-S-oxide reductase activity4.50E-03
71GO:0015035: protein disulfide oxidoreductase activity5.05E-03
72GO:0016746: transferase activity, transferring acyl groups5.05E-03
73GO:0008121: ubiquinol-cytochrome-c reductase activity5.32E-03
74GO:0043295: glutathione binding5.32E-03
75GO:0008107: galactoside 2-alpha-L-fucosyltransferase activity5.32E-03
76GO:0004034: aldose 1-epimerase activity6.17E-03
77GO:0043022: ribosome binding6.17E-03
78GO:0004708: MAP kinase kinase activity6.17E-03
79GO:0004714: transmembrane receptor protein tyrosine kinase activity6.17E-03
80GO:0003843: 1,3-beta-D-glucan synthase activity7.08E-03
81GO:0030247: polysaccharide binding7.35E-03
82GO:0004683: calmodulin-dependent protein kinase activity7.35E-03
83GO:0005506: iron ion binding7.71E-03
84GO:0008417: fucosyltransferase activity8.04E-03
85GO:0016207: 4-coumarate-CoA ligase activity8.04E-03
86GO:0071949: FAD binding8.04E-03
87GO:0016709: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, NAD(P)H as one donor, and incorporation of one atom of oxygen8.09E-03
88GO:0004743: pyruvate kinase activity9.03E-03
89GO:0030955: potassium ion binding9.03E-03
90GO:0004028: 3-chloroallyl aldehyde dehydrogenase activity9.03E-03
91GO:0050897: cobalt ion binding9.43E-03
92GO:0004713: protein tyrosine kinase activity1.01E-02
93GO:0004568: chitinase activity1.01E-02
94GO:0004129: cytochrome-c oxidase activity1.12E-02
95GO:0008422: beta-glucosidase activity1.13E-02
96GO:0030246: carbohydrate binding1.17E-02
97GO:0031072: heat shock protein binding1.34E-02
98GO:0005262: calcium channel activity1.34E-02
99GO:0042973: glucan endo-1,3-beta-D-glucosidase activity1.46E-02
100GO:0008061: chitin binding1.59E-02
101GO:0003712: transcription cofactor activity1.59E-02
102GO:0008146: sulfotransferase activity1.59E-02
103GO:0004970: ionotropic glutamate receptor activity1.59E-02
104GO:0005217: intracellular ligand-gated ion channel activity1.59E-02
105GO:0051287: NAD binding1.62E-02
106GO:0031625: ubiquitin protein ligase binding2.00E-02
107GO:0008810: cellulase activity2.40E-02
108GO:0004791: thioredoxin-disulfide reductase activity3.17E-02
109GO:0005524: ATP binding3.41E-02
110GO:0030170: pyridoxal phosphate binding3.57E-02
111GO:0043565: sequence-specific DNA binding3.61E-02
112GO:0016671: oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor3.84E-02
113GO:0019825: oxygen binding3.93E-02
114GO:0009055: electron carrier activity3.96E-02
115GO:0004702: signal transducer, downstream of receptor, with serine/threonine kinase activity4.19E-02
116GO:0008237: metallopeptidase activity4.19E-02
117GO:0051213: dioxygenase activity4.55E-02
118GO:0009931: calcium-dependent protein serine/threonine kinase activity4.91E-02
RankGO TermAdjusted P value
1GO:0000327: lytic vacuole within protein storage vacuole0.00E+00
2GO:0005788: endoplasmic reticulum lumen1.69E-17
3GO:0005783: endoplasmic reticulum3.82E-17
4GO:0030134: ER to Golgi transport vesicle5.43E-06
5GO:0005886: plasma membrane1.81E-05
6GO:0009507: chloroplast1.95E-05
7GO:0048046: apoplast3.81E-05
8GO:0005789: endoplasmic reticulum membrane6.13E-05
9GO:0005829: cytosol1.92E-04
10GO:0005839: proteasome core complex1.98E-04
11GO:0045252: oxoglutarate dehydrogenase complex3.47E-04
12GO:0019773: proteasome core complex, alpha-subunit complex4.61E-04
13GO:0005901: caveola7.56E-04
14GO:0005950: anthranilate synthase complex7.56E-04
15GO:0016021: integral component of membrane1.02E-03
16GO:0005618: cell wall1.39E-03
17GO:0009505: plant-type cell wall1.40E-03
18GO:0030176: integral component of endoplasmic reticulum membrane1.43E-03
19GO:0030660: Golgi-associated vesicle membrane2.37E-03
20GO:0071556: integral component of lumenal side of endoplasmic reticulum membrane2.37E-03
21GO:0005774: vacuolar membrane2.44E-03
22GO:0005746: mitochondrial respiratory chain3.03E-03
23GO:0008250: oligosaccharyltransferase complex3.03E-03
24GO:0000502: proteasome complex3.10E-03
25GO:0005801: cis-Golgi network4.50E-03
26GO:0030173: integral component of Golgi membrane4.50E-03
27GO:0016592: mediator complex4.60E-03
28GO:0032580: Golgi cisterna membrane5.22E-03
29GO:0030687: preribosome, large subunit precursor5.32E-03
30GO:0071458: integral component of cytoplasmic side of endoplasmic reticulum membrane6.17E-03
31GO:0005623: cell6.70E-03
32GO:0000148: 1,3-beta-D-glucan synthase complex7.08E-03
33GO:0000326: protein storage vacuole7.08E-03
34GO:0005773: vacuole7.76E-03
35GO:0030665: clathrin-coated vesicle membrane9.03E-03
36GO:0005740: mitochondrial envelope1.01E-02
37GO:0017119: Golgi transport complex1.01E-02
38GO:0005765: lysosomal membrane1.12E-02
39GO:0009536: plastid1.18E-02
40GO:0031012: extracellular matrix1.34E-02
41GO:0005750: mitochondrial respiratory chain complex III1.46E-02
42GO:0031225: anchored component of membrane1.51E-02
43GO:0016020: membrane1.66E-02
44GO:0009506: plasmodesma2.09E-02
45GO:0005741: mitochondrial outer membrane2.12E-02
46GO:0009504: cell plate3.33E-02
47GO:0005759: mitochondrial matrix4.04E-02
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Gene type



Gene DE type