co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT3G54400

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0042425: choline biosynthetic process	0.00E+00
2	GO:0042493: response to drug	0.00E+00
3	GO:1905499: trichome papilla formation	0.00E+00
4	GO:0007017: microtubule-based process	1.38E-07
5	GO:0071258: cellular response to gravity	4.79E-07
6	GO:0071555: cell wall organization	2.83E-06
7	GO:0006633: fatty acid biosynthetic process	5.80E-06
8	GO:0009828: plant-type cell wall loosening	5.25E-05
9	GO:0010411: xyloglucan metabolic process	8.81E-05
10	GO:0019354: siroheme biosynthetic process	9.50E-05
11	GO:0019510: S-adenosylhomocysteine catabolic process	9.50E-05
12	GO:0005980: glycogen catabolic process	9.50E-05
13	GO:0000032: cell wall mannoprotein biosynthetic process	9.50E-05
14	GO:0032025: response to cobalt ion	9.50E-05
15	GO:0042759: long-chain fatty acid biosynthetic process	9.50E-05
16	GO:0006949: syncytium formation	1.20E-04
17	GO:0042546: cell wall biogenesis	2.19E-04
18	GO:0009826: unidimensional cell growth	2.21E-04
19	GO:0006695: cholesterol biosynthetic process	2.24E-04
20	GO:0033353: S-adenosylmethionine cycle	2.24E-04
21	GO:0010025: wax biosynthetic process	2.70E-04
22	GO:0009664: plant-type cell wall organization	2.82E-04
23	GO:0033591: response to L-ascorbic acid	3.73E-04
24	GO:0046168: glycerol-3-phosphate catabolic process	3.73E-04
25	GO:0006065: UDP-glucuronate biosynthetic process	3.73E-04
26	GO:0030245: cellulose catabolic process	4.00E-04
27	GO:0009831: plant-type cell wall modification involved in multidimensional cell growth	4.36E-04
28	GO:0005975: carbohydrate metabolic process	4.66E-04
29	GO:0006869: lipid transport	5.11E-04
30	GO:0006072: glycerol-3-phosphate metabolic process	5.37E-04
31	GO:0009650: UV protection	5.37E-04
32	GO:0050482: arachidonic acid secretion	5.37E-04
33	GO:0009413: response to flooding	5.37E-04
34	GO:0009298: GDP-mannose biosynthetic process	5.37E-04
35	GO:0042335: cuticle development	5.52E-04
36	GO:0015976: carbon utilization	7.14E-04
37	GO:0015689: molybdate ion transport	7.14E-04
38	GO:0006183: GTP biosynthetic process	7.14E-04
39	GO:0009956: radial pattern formation	7.14E-04
40	GO:0006665: sphingolipid metabolic process	9.02E-04
41	GO:0048359: mucilage metabolic process involved in seed coat development	9.02E-04
42	GO:0006656: phosphatidylcholine biosynthetic process	9.02E-04
43	GO:0019288: isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway	1.10E-03
44	GO:0006014: D-ribose metabolic process	1.10E-03
45	GO:0048280: vesicle fusion with Golgi apparatus	1.31E-03
46	GO:0009554: megasporogenesis	1.31E-03
47	GO:0007568: aging	1.54E-03
48	GO:0048528: post-embryonic root development	1.54E-03
49	GO:0006644: phospholipid metabolic process	1.78E-03
50	GO:0007155: cell adhesion	1.78E-03
51	GO:0045337: farnesyl diphosphate biosynthetic process	2.29E-03
52	GO:0033384: geranyl diphosphate biosynthetic process	2.29E-03
53	GO:0006754: ATP biosynthetic process	2.29E-03
54	GO:0015780: nucleotide-sugar transport	2.29E-03
55	GO:0006779: porphyrin-containing compound biosynthetic process	2.56E-03
56	GO:0042761: very long-chain fatty acid biosynthetic process	2.56E-03
57	GO:0006896: Golgi to vacuole transport	2.85E-03
58	GO:0010015: root morphogenesis	3.14E-03
59	GO:0032259: methylation	3.37E-03
60	GO:0016042: lipid catabolic process	3.43E-03
61	GO:0016024: CDP-diacylglycerol biosynthetic process	3.44E-03
62	GO:0009266: response to temperature stimulus	4.08E-03
63	GO:0010143: cutin biosynthetic process	4.08E-03
64	GO:0009933: meristem structural organization	4.08E-03
65	GO:0009969: xyloglucan biosynthetic process	4.41E-03
66	GO:0010167: response to nitrate	4.41E-03
67	GO:0051017: actin filament bundle assembly	5.10E-03
68	GO:0019953: sexual reproduction	5.46E-03
69	GO:0008299: isoprenoid biosynthetic process	5.46E-03
70	GO:0016998: cell wall macromolecule catabolic process	5.83E-03
71	GO:0006730: one-carbon metabolic process	6.20E-03
72	GO:0009294: DNA mediated transformation	6.58E-03
73	GO:0009411: response to UV	6.58E-03
74	GO:0019722: calcium-mediated signaling	6.98E-03
75	GO:0010091: trichome branching	6.98E-03
76	GO:0045490: pectin catabolic process	7.06E-03
77	GO:0042147: retrograde transport, endosome to Golgi	7.38E-03
78	GO:0000226: microtubule cytoskeleton organization	7.79E-03
79	GO:0010305: leaf vascular tissue pattern formation	8.21E-03
80	GO:0006623: protein targeting to vacuole	9.06E-03
81	GO:0010183: pollen tube guidance	9.06E-03
82	GO:0019252: starch biosynthetic process	9.06E-03
83	GO:0006891: intra-Golgi vesicle-mediated transport	9.51E-03
84	GO:0010583: response to cyclopentenone	9.96E-03
85	GO:0007267: cell-cell signaling	1.14E-02
86	GO:0000910: cytokinesis	1.18E-02
87	GO:0042128: nitrate assimilation	1.33E-02
88	GO:0006888: ER to Golgi vesicle-mediated transport	1.38E-02
89	GO:0007169: transmembrane receptor protein tyrosine kinase signaling pathway	1.40E-02
90	GO:0016311: dephosphorylation	1.43E-02
91	GO:0009817: defense response to fungus, incompatible interaction	1.49E-02
92	GO:0009813: flavonoid biosynthetic process	1.54E-02
93	GO:0010043: response to zinc ion	1.65E-02
94	GO:0016051: carbohydrate biosynthetic process	1.76E-02
95	GO:0006631: fatty acid metabolic process	1.99E-02
96	GO:0010114: response to red light	2.10E-02
97	GO:0008643: carbohydrate transport	2.23E-02
98	GO:0042538: hyperosmotic salinity response	2.47E-02
99	GO:0006486: protein glycosylation	2.60E-02
100	GO:0048367: shoot system development	3.00E-02
101	GO:0042545: cell wall modification	3.27E-02
102	GO:0009416: response to light stimulus	3.56E-02

Rank	GO Term	Adjusted P value
1	GO:0004318: enoyl-[acyl-carrier-protein] reductase (NADH) activity	0.00E+00
2	GO:0047889: ferredoxin-nitrate reductase activity	0.00E+00
3	GO:0047450: crotonoyl-[acyl-carrier-protein] hydratase activity	0.00E+00
4	GO:0016631: enoyl-[acyl-carrier-protein] reductase activity	0.00E+00
5	GO:0004851: uroporphyrin-III C-methyltransferase activity	0.00E+00
6	GO:0050518: 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase activity	0.00E+00
7	GO:0019166: trans-2-enoyl-CoA reductase (NADPH) activity	0.00E+00
8	GO:0048307: ferredoxin-nitrite reductase activity	0.00E+00
9	GO:0050421: nitrite reductase (NO-forming) activity	0.00E+00
10	GO:0019146: arabinose-5-phosphate isomerase activity	0.00E+00
11	GO:0005200: structural constituent of cytoskeleton	1.61E-06
12	GO:0016762: xyloglucan:xyloglucosyl transferase activity	3.88E-05
13	GO:0004553: hydrolase activity, hydrolyzing O-glycosyl compounds	6.96E-05
14	GO:0016798: hydrolase activity, acting on glycosyl bonds	8.81E-05
15	GO:0047259: glucomannan 4-beta-mannosyltransferase activity	9.50E-05
16	GO:0004560: alpha-L-fucosidase activity	9.50E-05
17	GO:0004013: adenosylhomocysteinase activity	9.50E-05
18	GO:0008184: glycogen phosphorylase activity	9.50E-05
19	GO:0004645: phosphorylase activity	9.50E-05
20	GO:0004476: mannose-6-phosphate isomerase activity	9.50E-05
21	GO:0009374: biotin binding	9.50E-05
22	GO:0003938: IMP dehydrogenase activity	2.24E-04
23	GO:0019171: 3-hydroxyacyl-[acyl-carrier-protein] dehydratase activity	2.24E-04
24	GO:0000234: phosphoethanolamine N-methyltransferase activity	2.24E-04
25	GO:0051287: NAD binding	2.69E-04
26	GO:0005504: fatty acid binding	3.73E-04
27	GO:0004367: glycerol-3-phosphate dehydrogenase [NAD+] activity	3.73E-04
28	GO:0003979: UDP-glucose 6-dehydrogenase activity	3.73E-04
29	GO:0008810: cellulase activity	4.36E-04
30	GO:0003865: 3-oxo-5-alpha-steroid 4-dehydrogenase activity	5.37E-04
31	GO:0015098: molybdate ion transmembrane transporter activity	7.14E-04
32	GO:0045430: chalcone isomerase activity	7.14E-04
33	GO:0009922: fatty acid elongase activity	9.02E-04
34	GO:0004623: phospholipase A2 activity	9.02E-04
35	GO:0003989: acetyl-CoA carboxylase activity	9.02E-04
36	GO:0008289: lipid binding	1.00E-03
37	GO:0004366: glycerol-3-phosphate O-acyltransferase activity	1.10E-03
38	GO:0090447: glycerol-3-phosphate 2-O-acyltransferase activity	1.10E-03
39	GO:0004747: ribokinase activity	1.31E-03
40	GO:0051753: mannan synthase activity	1.31E-03
41	GO:0008865: fructokinase activity	1.78E-03
42	GO:0016627: oxidoreductase activity, acting on the CH-CH group of donors	2.29E-03
43	GO:0004337: geranyltranstransferase activity	2.29E-03
44	GO:0008553: hydrogen-exporting ATPase activity, phosphorylative mechanism	2.29E-03
45	GO:0004161: dimethylallyltranstransferase activity	3.14E-03
46	GO:0008378: galactosyltransferase activity	3.44E-03
47	GO:0004089: carbonate dehydratase activity	3.76E-03
48	GO:0030599: pectinesterase activity	3.86E-03
49	GO:0102336: 3-oxo-arachidoyl-CoA synthase activity	4.75E-03
50	GO:0102337: 3-oxo-cerotoyl-CoA synthase activity	4.75E-03
51	GO:0102338: 3-oxo-lignoceronyl-CoA synthase activity	4.75E-03
52	GO:0004857: enzyme inhibitor activity	5.10E-03
53	GO:0030570: pectate lyase activity	6.58E-03
54	GO:0008514: organic anion transmembrane transporter activity	6.98E-03
55	GO:0051015: actin filament binding	1.04E-02
56	GO:0008168: methyltransferase activity	1.05E-02
57	GO:0016791: phosphatase activity	1.09E-02
58	GO:0016788: hydrolase activity, acting on ester bonds	1.11E-02
59	GO:0016722: oxidoreductase activity, oxidizing metal ions	1.14E-02
60	GO:0008757: S-adenosylmethionine-dependent methyltransferase activity	1.43E-02
61	GO:0052689: carboxylic ester hydrolase activity	1.50E-02
62	GO:0000149: SNARE binding	1.87E-02
63	GO:0051539: 4 iron, 4 sulfur cluster binding	1.93E-02
64	GO:0003924: GTPase activity	2.01E-02
65	GO:0005484: SNAP receptor activity	2.10E-02
66	GO:0009055: electron carrier activity	2.15E-02
67	GO:0045330: aspartyl esterase activity	2.80E-02
68	GO:0045735: nutrient reservoir activity	2.93E-02
69	GO:0016747: transferase activity, transferring acyl groups other than amino-acyl groups	3.00E-02
70	GO:0004650: polygalacturonase activity	3.14E-02
71	GO:0022857: transmembrane transporter activity	3.20E-02
72	GO:0016746: transferase activity, transferring acyl groups	3.42E-02
73	GO:0016829: lyase activity	4.15E-02
74	GO:0030170: pyridoxal phosphate binding	4.23E-02
75	GO:0016740: transferase activity	4.33E-02
76	GO:0008565: protein transporter activity	4.46E-02

Rank	GO Term	Adjusted P value
1	GO:0005835: fatty acid synthase complex	0.00E+00
2	GO:0005618: cell wall	9.93E-10
3	GO:0046658: anchored component of plasma membrane	7.38E-07
4	GO:0045298: tubulin complex	9.72E-07
5	GO:0031225: anchored component of membrane	1.25E-05
6	GO:0005576: extracellular region	1.43E-05
7	GO:0048046: apoplast	3.71E-05
8	GO:0005886: plasma membrane	5.14E-05
9	GO:0009923: fatty acid elongase complex	9.50E-05
10	GO:0009570: chloroplast stroma	2.44E-04
11	GO:0016020: membrane	3.43E-04
12	GO:0009317: acetyl-CoA carboxylase complex	3.73E-04
13	GO:0015630: microtubule cytoskeleton	5.37E-04
14	GO:0009331: glycerol-3-phosphate dehydrogenase complex	5.37E-04
15	GO:0009505: plant-type cell wall	1.40E-03
16	GO:0012507: ER to Golgi transport vesicle membrane	1.78E-03
17	GO:0009506: plasmodesma	4.46E-03
18	GO:0005875: microtubule associated complex	4.75E-03
19	GO:0031410: cytoplasmic vesicle	6.20E-03
20	GO:0015629: actin cytoskeleton	6.58E-03
21	GO:0009504: cell plate	9.06E-03
22	GO:0005874: microtubule	1.31E-02
23	GO:0031201: SNARE complex	1.99E-02
24	GO:0031902: late endosome membrane	1.99E-02
25	GO:0005856: cytoskeleton	2.29E-02
26	GO:0005794: Golgi apparatus	2.30E-02
27	GO:0009536: plastid	2.33E-02
28	GO:0005789: endoplasmic reticulum membrane	3.07E-02
29	GO:0009507: chloroplast	3.71E-02
30	GO:0009534: chloroplast thylakoid	4.29E-02