Gene type: Transcription factor Metabolic gene Others DE type: Up Down Slightly_up Slightly_down Mixeded Others

GO Enrichment Analysis of Co-expressed Genes with

AT3G54090

GO-BP
GO-MF
GO-CC
RankGO TermAdjusted P value
1GO:0002103: endonucleolytic cleavage of tetracistronic rRNA transcript (SSU-rRNA, LSU-rRNA, 4.5S-rRNA, 5S-rRNA)0.00E+00
2GO:0051290: protein heterotetramerization0.00E+00
3GO:1901671: positive regulation of superoxide dismutase activity0.00E+00
4GO:0010501: RNA secondary structure unwinding1.43E-06
5GO:0009662: etioplast organization4.37E-06
6GO:0006986: response to unfolded protein1.33E-05
7GO:0080158: chloroplast ribulose bisphosphate carboxylase complex biogenesis1.33E-05
8GO:0051085: chaperone mediated protein folding requiring cofactor1.33E-05
9GO:0042793: transcription from plastid promoter3.30E-05
10GO:0009082: branched-chain amino acid biosynthetic process4.09E-05
11GO:0006458: 'de novo' protein folding4.09E-05
12GO:0009099: valine biosynthetic process4.09E-05
13GO:0042026: protein refolding4.09E-05
14GO:1901259: chloroplast rRNA processing4.09E-05
15GO:0009658: chloroplast organization6.56E-05
16GO:0009097: isoleucine biosynthetic process6.80E-05
17GO:0009657: plastid organization6.80E-05
18GO:0061077: chaperone-mediated protein folding2.11E-04
19GO:0007005: mitochondrion organization2.25E-04
20GO:0009788: negative regulation of abscisic acid-activated signaling pathway4.53E-04
21GO:0009553: embryo sac development1.06E-03
22GO:0009790: embryo development1.38E-03
23GO:0042254: ribosome biogenesis2.09E-03
24GO:0048364: root development3.18E-03
25GO:0009555: pollen development4.57E-03
26GO:0006457: protein folding5.46E-03
27GO:0006414: translational elongation6.02E-03
28GO:0009409: response to cold9.20E-03
29GO:0046686: response to cadmium ion1.01E-02
30GO:0009651: response to salt stress1.75E-02
31GO:0006412: translation2.40E-02
RankGO TermAdjusted P value
1GO:0004160: dihydroxy-acid dehydratase activity1.54E-06
2GO:0004004: ATP-dependent RNA helicase activity4.23E-06
3GO:0070180: large ribosomal subunit rRNA binding8.33E-06
4GO:0016836: hydro-lyase activity1.91E-05
5GO:0051082: unfolded protein binding2.05E-05
6GO:0008026: ATP-dependent helicase activity2.20E-05
7GO:0044183: protein binding involved in protein folding1.11E-04
8GO:0051087: chaperone binding1.98E-04
9GO:0005507: copper ion binding3.37E-04
10GO:0003746: translation elongation factor activity6.05E-04
11GO:0051539: 4 iron, 4 sulfur cluster binding6.58E-04
12GO:0005524: ATP binding1.01E-03
13GO:0019843: rRNA binding1.25E-03
14GO:0016887: ATPase activity4.17E-03
15GO:0005516: calmodulin binding6.06E-03
16GO:0003824: catalytic activity7.94E-03
17GO:0003735: structural constituent of ribosome1.21E-02
18GO:0003723: RNA binding3.20E-02
19GO:0005515: protein binding4.98E-02
RankGO TermAdjusted P value
1GO:0009295: nucleoid2.93E-06
2GO:0009570: chloroplast stroma1.18E-05
3GO:0009507: chloroplast1.62E-05
4GO:0042644: chloroplast nucleoid7.81E-05
5GO:0009508: plastid chromosome1.34E-04
6GO:0009579: thylakoid2.83E-04
7GO:0009536: plastid5.78E-04
8GO:0005759: mitochondrial matrix1.45E-03
9GO:0048046: apoplast1.63E-03
10GO:0009941: chloroplast envelope2.09E-03
11GO:0022626: cytosolic ribosome4.43E-03
12GO:0005840: ribosome7.69E-03
13GO:0009535: chloroplast thylakoid membrane1.31E-02
<
Gene type



Gene DE type