co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT3G54010

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0048227: plasma membrane to endosome transport	0.00E+00
2	GO:0009991: response to extracellular stimulus	0.00E+00
3	GO:0000169: activation of MAPK activity involved in osmosensory signaling pathway	0.00E+00
4	GO:0080136: priming of cellular response to stress	1.00E-04
5	GO:0034214: protein hexamerization	1.00E-04
6	GO:0010201: response to continuous far red light stimulus by the high-irradiance response system	1.00E-04
7	GO:0006805: xenobiotic metabolic process	1.00E-04
8	GO:0000303: response to superoxide	1.00E-04
9	GO:0010102: lateral root morphogenesis	2.03E-04
10	GO:1902000: homogentisate catabolic process	2.36E-04
11	GO:1905182: positive regulation of urease activity	2.36E-04
12	GO:0007188: adenylate cyclase-modulating G-protein coupled receptor signaling pathway	3.92E-04
13	GO:0006556: S-adenosylmethionine biosynthetic process	3.92E-04
14	GO:1900140: regulation of seedling development	3.92E-04
15	GO:0010359: regulation of anion channel activity	3.92E-04
16	GO:0006517: protein deglycosylation	3.92E-04
17	GO:0009072: aromatic amino acid family metabolic process	3.92E-04
18	GO:0046777: protein autophosphorylation	4.19E-04
19	GO:0006468: protein phosphorylation	4.80E-04
20	GO:0006886: intracellular protein transport	5.24E-04
21	GO:0072583: clathrin-dependent endocytosis	5.64E-04
22	GO:0001676: long-chain fatty acid metabolic process	5.64E-04
23	GO:0048194: Golgi vesicle budding	5.64E-04
24	GO:0006809: nitric oxide biosynthetic process	5.64E-04
25	GO:0042631: cellular response to water deprivation	5.95E-04
26	GO:2000038: regulation of stomatal complex development	7.50E-04
27	GO:0031087: deadenylation-independent decapping of nuclear-transcribed mRNA	7.50E-04
28	GO:0006878: cellular copper ion homeostasis	7.50E-04
29	GO:0060548: negative regulation of cell death	7.50E-04
30	GO:0010193: response to ozone	7.83E-04
31	GO:0030308: negative regulation of cell growth	9.47E-04
32	GO:0006979: response to oxidative stress	1.09E-03
33	GO:0019243: methylglyoxal catabolic process to D-lactate via S-lactoyl-glutathione	1.16E-03
34	GO:1902456: regulation of stomatal opening	1.16E-03
35	GO:1900425: negative regulation of defense response to bacterium	1.16E-03
36	GO:0006751: glutathione catabolic process	1.16E-03
37	GO:0070814: hydrogen sulfide biosynthetic process	1.16E-03
38	GO:0006470: protein dephosphorylation	1.25E-03
39	GO:0007166: cell surface receptor signaling pathway	1.25E-03
40	GO:0010555: response to mannitol	1.38E-03
41	GO:2000037: regulation of stomatal complex patterning	1.38E-03
42	GO:2000067: regulation of root morphogenesis	1.38E-03
43	GO:0009738: abscisic acid-activated signaling pathway	1.54E-03
44	GO:0015937: coenzyme A biosynthetic process	1.62E-03
45	GO:0009610: response to symbiotic fungus	1.62E-03
46	GO:0009867: jasmonic acid mediated signaling pathway	1.81E-03
47	GO:0006491: N-glycan processing	1.87E-03
48	GO:0043068: positive regulation of programmed cell death	1.87E-03
49	GO:0006970: response to osmotic stress	2.01E-03
50	GO:0010120: camalexin biosynthetic process	2.14E-03
51	GO:0010417: glucuronoxylan biosynthetic process	2.14E-03
52	GO:0030968: endoplasmic reticulum unfolded protein response	2.14E-03
53	GO:0009808: lignin metabolic process	2.14E-03
54	GO:0006897: endocytosis	2.14E-03
55	GO:0006631: fatty acid metabolic process	2.14E-03
56	GO:0007186: G-protein coupled receptor signaling pathway	2.14E-03
57	GO:0090333: regulation of stomatal closure	2.41E-03
58	GO:0009636: response to toxic substance	2.61E-03
59	GO:0009862: systemic acquired resistance, salicylic acid mediated signaling pathway	2.70E-03
60	GO:2000280: regulation of root development	2.70E-03
61	GO:0008202: steroid metabolic process	2.70E-03
62	GO:0048268: clathrin coat assembly	2.70E-03
63	GO:0019538: protein metabolic process	3.00E-03
64	GO:0000103: sulfate assimilation	3.00E-03
65	GO:0010629: negative regulation of gene expression	3.00E-03
66	GO:0072593: reactive oxygen species metabolic process	3.31E-03
67	GO:0043085: positive regulation of catalytic activity	3.31E-03
68	GO:0009750: response to fructose	3.31E-03
69	GO:0030148: sphingolipid biosynthetic process	3.31E-03
70	GO:0012501: programmed cell death	3.63E-03
71	GO:0009626: plant-type hypersensitive response	3.91E-03
72	GO:0006807: nitrogen compound metabolic process	3.95E-03
73	GO:0010229: inflorescence development	3.95E-03
74	GO:0055046: microgametogenesis	3.95E-03
75	GO:0009887: animal organ morphogenesis	4.30E-03
76	GO:0042742: defense response to bacterium	4.73E-03
77	GO:0034976: response to endoplasmic reticulum stress	5.00E-03
78	GO:2000377: regulation of reactive oxygen species metabolic process	5.37E-03
79	GO:0009790: embryo development	6.44E-03
80	GO:0006730: one-carbon metabolic process	6.54E-03
81	GO:0010227: floral organ abscission	6.94E-03
82	GO:0009693: ethylene biosynthetic process	6.94E-03
83	GO:0071215: cellular response to abscisic acid stimulus	6.94E-03
84	GO:0009561: megagametogenesis	7.35E-03
85	GO:0045492: xylan biosynthetic process	7.35E-03
86	GO:0016567: protein ubiquitination	7.55E-03
87	GO:0010150: leaf senescence	7.61E-03
88	GO:0006508: proteolysis	7.67E-03
89	GO:0042147: retrograde transport, endosome to Golgi	7.78E-03
90	GO:0042391: regulation of membrane potential	8.21E-03
91	GO:0071472: cellular response to salt stress	8.65E-03
92	GO:0010154: fruit development	8.65E-03
93	GO:0010197: polar nucleus fusion	8.65E-03
94	GO:0009617: response to bacterium	9.09E-03
95	GO:0010468: regulation of gene expression	9.09E-03
96	GO:0048544: recognition of pollen	9.10E-03
97	GO:0009749: response to glucose	9.56E-03
98	GO:0006623: protein targeting to vacuole	9.56E-03
99	GO:0010183: pollen tube guidance	9.56E-03
100	GO:0071554: cell wall organization or biogenesis	1.00E-02
101	GO:0002229: defense response to oomycetes	1.00E-02
102	GO:0006891: intra-Golgi vesicle-mediated transport	1.00E-02
103	GO:0016032: viral process	1.05E-02
104	GO:0007264: small GTPase mediated signal transduction	1.05E-02
105	GO:0071281: cellular response to iron ion	1.10E-02
106	GO:0009816: defense response to bacterium, incompatible interaction	1.35E-02
107	GO:0009788: negative regulation of abscisic acid-activated signaling pathway	1.35E-02
108	GO:0009723: response to ethylene	1.37E-02
109	GO:0007165: signal transduction	1.43E-02
110	GO:0048573: photoperiodism, flowering	1.46E-02
111	GO:0009737: response to abscisic acid	1.48E-02
112	GO:0010200: response to chitin	1.52E-02
113	GO:0007169: transmembrane receptor protein tyrosine kinase signaling pathway	1.52E-02
114	GO:0048481: plant ovule development	1.57E-02
115	GO:0008219: cell death	1.57E-02
116	GO:0009817: defense response to fungus, incompatible interaction	1.57E-02
117	GO:0006499: N-terminal protein myristoylation	1.68E-02
118	GO:0009407: toxin catabolic process	1.68E-02
119	GO:0009834: plant-type secondary cell wall biogenesis	1.68E-02
120	GO:0048527: lateral root development	1.74E-02
121	GO:0010119: regulation of stomatal movement	1.74E-02
122	GO:0006952: defense response	2.12E-02
123	GO:0042542: response to hydrogen peroxide	2.16E-02
124	GO:0009744: response to sucrose	2.22E-02
125	GO:0048364: root development	2.26E-02
126	GO:0042546: cell wall biogenesis	2.29E-02
127	GO:0000209: protein polyubiquitination	2.29E-02
128	GO:0009644: response to high light intensity	2.35E-02
129	GO:0042787: protein ubiquitination involved in ubiquitin-dependent protein catabolic process	2.55E-02
130	GO:0042538: hyperosmotic salinity response	2.61E-02
131	GO:0015031: protein transport	2.68E-02
132	GO:0051603: proteolysis involved in cellular protein catabolic process	2.81E-02
133	GO:0010224: response to UV-B	2.81E-02
134	GO:0048367: shoot system development	3.17E-02
135	GO:0016569: covalent chromatin modification	3.38E-02
136	GO:0009624: response to nematode	3.53E-02
137	GO:0018105: peptidyl-serine phosphorylation	3.61E-02
138	GO:0006396: RNA processing	3.61E-02
139	GO:0051726: regulation of cell cycle	3.68E-02
140	GO:0009742: brassinosteroid mediated signaling pathway	3.68E-02
141	GO:0009845: seed germination	4.38E-02
142	GO:0006633: fatty acid biosynthetic process	4.87E-02

Rank	GO Term	Adjusted P value
1	GO:0016034: maleylacetoacetate isomerase activity	0.00E+00
2	GO:0005524: ATP binding	6.41E-08
3	GO:0102391: decanoate--CoA ligase activity	3.24E-05
4	GO:0004012: phospholipid-translocating ATPase activity	3.24E-05
5	GO:0004467: long-chain fatty acid-CoA ligase activity	4.38E-05
6	GO:0004714: transmembrane receptor protein tyrosine kinase activity	5.73E-05
7	GO:0033925: mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase activity	1.00E-04
8	GO:0032050: clathrin heavy chain binding	1.00E-04
9	GO:0005515: protein binding	1.14E-04
10	GO:0015662: ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism	2.03E-04
11	GO:0047517: 1,4-beta-D-xylan synthase activity	2.36E-04
12	GO:0045140: inositol phosphoceramide synthase activity	2.36E-04
13	GO:0047209: coniferyl-alcohol glucosyltransferase activity	2.36E-04
14	GO:0004594: pantothenate kinase activity	2.36E-04
15	GO:0031683: G-protein beta/gamma-subunit complex binding	3.92E-04
16	GO:0003840: gamma-glutamyltransferase activity	3.92E-04
17	GO:0036374: glutathione hydrolase activity	3.92E-04
18	GO:0004781: sulfate adenylyltransferase (ATP) activity	3.92E-04
19	GO:0016805: dipeptidase activity	3.92E-04
20	GO:0004478: methionine adenosyltransferase activity	3.92E-04
21	GO:0001664: G-protein coupled receptor binding	3.92E-04
22	GO:0005093: Rab GDP-dissociation inhibitor activity	3.92E-04
23	GO:0016151: nickel cation binding	3.92E-04
24	GO:0080116: glucuronoxylan glucuronosyltransferase activity	3.92E-04
25	GO:0004674: protein serine/threonine kinase activity	5.09E-04
26	GO:0004416: hydroxyacylglutathione hydrolase activity	5.64E-04
27	GO:0016756: glutathione gamma-glutamylcysteinyltransferase activity	5.64E-04
28	GO:0004301: epoxide hydrolase activity	7.50E-04
29	GO:0005496: steroid binding	9.47E-04
30	GO:0070696: transmembrane receptor protein serine/threonine kinase binding	9.47E-04
31	GO:0003950: NAD+ ADP-ribosyltransferase activity	1.38E-03
32	GO:0008235: metalloexopeptidase activity	1.62E-03
33	GO:0004672: protein kinase activity	2.11E-03
34	GO:0008142: oxysterol binding	2.14E-03
35	GO:0004713: protein tyrosine kinase activity	3.00E-03
36	GO:0005545: 1-phosphatidylinositol binding	3.00E-03
37	GO:0004177: aminopeptidase activity	3.31E-03
38	GO:0004722: protein serine/threonine phosphatase activity	3.38E-03
39	GO:0016301: kinase activity	3.56E-03
40	GO:0003924: GTPase activity	3.92E-03
41	GO:0004190: aspartic-type endopeptidase activity	4.64E-03
42	GO:0030552: cAMP binding	4.64E-03
43	GO:0030553: cGMP binding	4.64E-03
44	GO:0003954: NADH dehydrogenase activity	5.37E-03
45	GO:0005216: ion channel activity	5.75E-03
46	GO:0004707: MAP kinase activity	6.14E-03
47	GO:0033612: receptor serine/threonine kinase binding	6.14E-03
48	GO:0008565: protein transporter activity	6.60E-03
49	GO:0003756: protein disulfide isomerase activity	7.35E-03
50	GO:0000166: nucleotide binding	8.12E-03
51	GO:0005249: voltage-gated potassium channel activity	8.21E-03
52	GO:0030551: cyclic nucleotide binding	8.21E-03
53	GO:0030276: clathrin binding	8.65E-03
54	GO:0016853: isomerase activity	9.10E-03
55	GO:0004197: cysteine-type endopeptidase activity	1.05E-02
56	GO:0000287: magnesium ion binding	1.16E-02
57	GO:0046982: protein heterodimerization activity	1.16E-02
58	GO:0030246: carbohydrate binding	1.18E-02
59	GO:0016413: O-acetyltransferase activity	1.25E-02
60	GO:0043531: ADP binding	1.30E-02
61	GO:0005516: calmodulin binding	1.36E-02
62	GO:0009931: calcium-dependent protein serine/threonine kinase activity	1.40E-02
63	GO:0030247: polysaccharide binding	1.46E-02
64	GO:0004683: calmodulin-dependent protein kinase activity	1.46E-02
65	GO:0016798: hydrolase activity, acting on glycosyl bonds	1.46E-02
66	GO:0005096: GTPase activator activity	1.62E-02
67	GO:0030145: manganese ion binding	1.74E-02
68	GO:0042803: protein homodimerization activity	1.84E-02
69	GO:0004871: signal transducer activity	1.84E-02
70	GO:0004712: protein serine/threonine/tyrosine kinase activity	1.97E-02
71	GO:0042393: histone binding	2.03E-02
72	GO:0004364: glutathione transferase activity	2.16E-02
73	GO:0005198: structural molecule activity	2.41E-02
74	GO:0004842: ubiquitin-protein transferase activity	2.98E-02
75	GO:0008289: lipid binding	3.02E-02
76	GO:0080043: quercetin 3-O-glucosyltransferase activity	3.31E-02
77	GO:0080044: quercetin 7-O-glucosyltransferase activity	3.31E-02
78	GO:0016887: ATPase activity	3.36E-02
79	GO:0016740: transferase activity	4.67E-02
80	GO:0004675: transmembrane receptor protein serine/threonine kinase activity	4.95E-02

Rank	GO Term	Adjusted P value
1	GO:0005886: plasma membrane	7.23E-08
2	GO:0030125: clathrin vesicle coat	1.30E-04
3	GO:0031304: intrinsic component of mitochondrial inner membrane	2.36E-04
4	GO:0005905: clathrin-coated pit	3.94E-04
5	GO:0005802: trans-Golgi network	7.19E-04
6	GO:0030904: retromer complex	1.16E-03
7	GO:0016363: nuclear matrix	1.38E-03
8	GO:0005794: Golgi apparatus	1.57E-03
9	GO:0005829: cytosol	1.58E-03
10	GO:0030131: clathrin adaptor complex	1.87E-03
11	GO:0017119: Golgi transport complex	3.00E-03
12	GO:0016021: integral component of membrane	3.87E-03
13	GO:0005834: heterotrimeric G-protein complex	3.91E-03
14	GO:0016602: CCAAT-binding factor complex	3.95E-03
15	GO:0005795: Golgi stack	4.64E-03
16	GO:0005623: cell	5.67E-03
17	GO:0030136: clathrin-coated vesicle	7.78E-03
18	GO:0005783: endoplasmic reticulum	1.10E-02
19	GO:0030529: intracellular ribonucleoprotein complex	1.30E-02
20	GO:0000932: P-body	1.30E-02
21	GO:0005788: endoplasmic reticulum lumen	1.35E-02
22	GO:0005768: endosome	1.74E-02
23	GO:0000786: nucleosome	1.80E-02
24	GO:0031902: late endosome membrane	2.10E-02
25	GO:0000139: Golgi membrane	2.90E-02
26	GO:0005887: integral component of plasma membrane	2.94E-02
27	GO:0010008: endosome membrane	3.17E-02
28	GO:0005789: endoplasmic reticulum membrane	3.37E-02
29	GO:0005777: peroxisome	4.40E-02