co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT3G53780

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0071327: cellular response to trehalose stimulus	0.00E+00
2	GO:1900367: positive regulation of defense response to insect	0.00E+00
3	GO:0010942: positive regulation of cell death	2.01E-05
4	GO:0006102: isocitrate metabolic process	5.09E-05
5	GO:0006468: protein phosphorylation	9.25E-05
6	GO:1901183: positive regulation of camalexin biosynthetic process	9.33E-05
7	GO:0060862: negative regulation of floral organ abscission	9.33E-05
8	GO:0006805: xenobiotic metabolic process	9.33E-05
9	GO:0010150: leaf senescence	1.06E-04
10	GO:0007166: cell surface receptor signaling pathway	1.35E-04
11	GO:0006099: tricarboxylic acid cycle	1.49E-04
12	GO:0019483: beta-alanine biosynthetic process	2.20E-04
13	GO:0080151: positive regulation of salicylic acid mediated signaling pathway	2.20E-04
14	GO:0010618: aerenchyma formation	2.20E-04
15	GO:0051262: protein tetramerization	2.20E-04
16	GO:0006212: uracil catabolic process	2.20E-04
17	GO:0031349: positive regulation of defense response	2.20E-04
18	GO:0009062: fatty acid catabolic process	3.67E-04
19	GO:1900140: regulation of seedling development	3.67E-04
20	GO:0071494: cellular response to UV-C	3.67E-04
21	GO:0010498: proteasomal protein catabolic process	3.67E-04
22	GO:0071323: cellular response to chitin	5.28E-04
23	GO:0001676: long-chain fatty acid metabolic process	5.28E-04
24	GO:0000187: activation of MAPK activity	5.28E-04
25	GO:0048194: Golgi vesicle budding	5.28E-04
26	GO:0009399: nitrogen fixation	5.28E-04
27	GO:2000038: regulation of stomatal complex development	7.02E-04
28	GO:0080142: regulation of salicylic acid biosynthetic process	7.02E-04
29	GO:0006542: glutamine biosynthetic process	7.02E-04
30	GO:0060548: negative regulation of cell death	7.02E-04
31	GO:0006090: pyruvate metabolic process	8.88E-04
32	GO:0030041: actin filament polymerization	8.88E-04
33	GO:0031365: N-terminal protein amino acid modification	8.88E-04
34	GO:0010225: response to UV-C	8.88E-04
35	GO:1900425: negative regulation of defense response to bacterium	1.08E-03
36	GO:0006014: D-ribose metabolic process	1.08E-03
37	GO:0006751: glutathione catabolic process	1.08E-03
38	GO:0006694: steroid biosynthetic process	1.29E-03
39	GO:2000037: regulation of stomatal complex patterning	1.29E-03
40	GO:0010310: regulation of hydrogen peroxide metabolic process	1.29E-03
41	GO:0015977: carbon fixation	1.29E-03
42	GO:0043090: amino acid import	1.51E-03
43	GO:1900150: regulation of defense response to fungus	1.75E-03
44	GO:0016559: peroxisome fission	1.75E-03
45	GO:0018401: peptidyl-proline hydroxylation to 4-hydroxy-L-proline	1.75E-03
46	GO:0009819: drought recovery	1.75E-03
47	GO:0006952: defense response	1.76E-03
48	GO:0043562: cellular response to nitrogen levels	2.00E-03
49	GO:2000031: regulation of salicylic acid mediated signaling pathway	2.00E-03
50	GO:0006002: fructose 6-phosphate metabolic process	2.00E-03
51	GO:0010112: regulation of systemic acquired resistance	2.25E-03
52	GO:1900426: positive regulation of defense response to bacterium	2.52E-03
53	GO:0009862: systemic acquired resistance, salicylic acid mediated signaling pathway	2.52E-03
54	GO:0000103: sulfate assimilation	2.80E-03
55	GO:0006096: glycolytic process	3.32E-03
56	GO:0010105: negative regulation of ethylene-activated signaling pathway	3.38E-03
57	GO:0000266: mitochondrial fission	3.38E-03
58	GO:0002213: defense response to insect	3.38E-03
59	GO:0009626: plant-type hypersensitive response	3.54E-03
60	GO:0006807: nitrogen compound metabolic process	3.69E-03
61	GO:0006108: malate metabolic process	3.69E-03
62	GO:0010229: inflorescence development	3.69E-03
63	GO:0055046: microgametogenesis	3.69E-03
64	GO:0070588: calcium ion transmembrane transport	4.33E-03
65	GO:0010053: root epidermal cell differentiation	4.33E-03
66	GO:0034976: response to endoplasmic reticulum stress	4.67E-03
67	GO:2000377: regulation of reactive oxygen species metabolic process	5.01E-03
68	GO:0009814: defense response, incompatible interaction	6.09E-03
69	GO:2000022: regulation of jasmonic acid mediated signaling pathway	6.09E-03
70	GO:0030433: ubiquitin-dependent ERAD pathway	6.09E-03
71	GO:0007005: mitochondrion organization	6.09E-03
72	GO:0031348: negative regulation of defense response	6.09E-03
73	GO:0006508: proteolysis	6.41E-03
74	GO:0009625: response to insect	6.47E-03
75	GO:0010227: floral organ abscission	6.47E-03
76	GO:0009561: megagametogenesis	6.85E-03
77	GO:0006662: glycerol ether metabolic process	8.06E-03
78	GO:0019252: starch biosynthetic process	8.90E-03
79	GO:0006623: protein targeting to vacuole	8.90E-03
80	GO:0010183: pollen tube guidance	8.90E-03
81	GO:0010193: response to ozone	9.33E-03
82	GO:0000302: response to reactive oxygen species	9.33E-03
83	GO:0006891: intra-Golgi vesicle-mediated transport	9.33E-03
84	GO:0006635: fatty acid beta-oxidation	9.33E-03
85	GO:0031047: gene silencing by RNA	9.78E-03
86	GO:0030163: protein catabolic process	1.02E-02
87	GO:0001666: response to hypoxia	1.21E-02
88	GO:0009816: defense response to bacterium, incompatible interaction	1.26E-02
89	GO:0006974: cellular response to DNA damage stimulus	1.31E-02
90	GO:0009627: systemic acquired resistance	1.31E-02
91	GO:0042128: nitrate assimilation	1.31E-02
92	GO:0007169: transmembrane receptor protein tyrosine kinase signaling pathway	1.37E-02
93	GO:0010200: response to chitin	1.37E-02
94	GO:0008219: cell death	1.46E-02
95	GO:0009813: flavonoid biosynthetic process	1.51E-02
96	GO:0006499: N-terminal protein myristoylation	1.56E-02
97	GO:0045454: cell redox homeostasis	1.59E-02
98	GO:0048527: lateral root development	1.62E-02
99	GO:0006865: amino acid transport	1.67E-02
100	GO:0045087: innate immune response	1.73E-02
101	GO:0034599: cellular response to oxidative stress	1.78E-02
102	GO:0009751: response to salicylic acid	1.93E-02
103	GO:0006631: fatty acid metabolic process	1.95E-02
104	GO:0051707: response to other organism	2.07E-02
105	GO:0000209: protein polyubiquitination	2.13E-02
106	GO:0009636: response to toxic substance	2.24E-02
107	GO:0000165: MAPK cascade	2.37E-02
108	GO:0042787: protein ubiquitination involved in ubiquitin-dependent protein catabolic process	2.37E-02
109	GO:0055114: oxidation-reduction process	2.87E-02
110	GO:0009620: response to fungus	3.08E-02
111	GO:0016569: covalent chromatin modification	3.15E-02
112	GO:0051726: regulation of cell cycle	3.42E-02
113	GO:0009742: brassinosteroid mediated signaling pathway	3.42E-02
114	GO:0016036: cellular response to phosphate starvation	4.61E-02
115	GO:0007623: circadian rhythm	4.84E-02

Rank	GO Term	Adjusted P value
1	GO:0003837: beta-ureidopropionase activity	0.00E+00
2	GO:0016301: kinase activity	8.12E-07
3	GO:0004449: isocitrate dehydrogenase (NAD+) activity	4.19E-06
4	GO:0005524: ATP binding	9.76E-06
5	GO:0004012: phospholipid-translocating ATPase activity	2.87E-05
6	GO:0004714: transmembrane receptor protein tyrosine kinase activity	5.09E-05
7	GO:0008809: carnitine racemase activity	9.33E-05
8	GO:0004675: transmembrane receptor protein serine/threonine kinase activity	9.36E-05
9	GO:0015662: ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism	1.83E-04
10	GO:0004190: aspartic-type endopeptidase activity	2.34E-04
11	GO:0008964: phosphoenolpyruvate carboxylase activity	3.67E-04
12	GO:0003840: gamma-glutamyltransferase activity	3.67E-04
13	GO:0036374: glutathione hydrolase activity	3.67E-04
14	GO:0052692: raffinose alpha-galactosidase activity	3.67E-04
15	GO:0003854: 3-beta-hydroxy-delta5-steroid dehydrogenase activity	3.67E-04
16	GO:0004557: alpha-galactosidase activity	3.67E-04
17	GO:0005515: protein binding	4.21E-04
18	GO:0004165: dodecenoyl-CoA delta-isomerase activity	5.28E-04
19	GO:0016756: glutathione gamma-glutamylcysteinyltransferase activity	5.28E-04
20	GO:0004470: malic enzyme activity	7.02E-04
21	GO:0016652: oxidoreductase activity, acting on NAD(P)H, NAD(P) as acceptor	7.02E-04
22	GO:0004471: malate dehydrogenase (decarboxylating) (NAD+) activity	7.02E-04
23	GO:0004356: glutamate-ammonia ligase activity	8.88E-04
24	GO:0045431: flavonol synthase activity	8.88E-04
25	GO:0004656: procollagen-proline 4-dioxygenase activity	1.29E-03
26	GO:0102391: decanoate--CoA ligase activity	1.29E-03
27	GO:0004747: ribokinase activity	1.29E-03
28	GO:0004674: protein serine/threonine kinase activity	1.36E-03
29	GO:0004467: long-chain fatty acid-CoA ligase activity	1.51E-03
30	GO:0008235: metalloexopeptidase activity	1.51E-03
31	GO:0003872: 6-phosphofructokinase activity	1.51E-03
32	GO:0000287: magnesium ion binding	1.57E-03
33	GO:0008865: fructokinase activity	1.75E-03
34	GO:0004708: MAP kinase kinase activity	1.75E-03
35	GO:0030955: potassium ion binding	2.52E-03
36	GO:0004743: pyruvate kinase activity	2.52E-03
37	GO:0004713: protein tyrosine kinase activity	2.80E-03
38	GO:0004177: aminopeptidase activity	3.09E-03
39	GO:0005262: calcium channel activity	3.69E-03
40	GO:0005388: calcium-transporting ATPase activity	3.69E-03
41	GO:0008061: chitin binding	4.33E-03
42	GO:0003712: transcription cofactor activity	4.33E-03
43	GO:0031418: L-ascorbic acid binding	5.01E-03
44	GO:0003954: NADH dehydrogenase activity	5.01E-03
45	GO:0016705: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen	5.12E-03
46	GO:0033612: receptor serine/threonine kinase binding	5.72E-03
47	GO:0003756: protein disulfide isomerase activity	6.85E-03
48	GO:0047134: protein-disulfide reductase activity	7.25E-03
49	GO:0004791: thioredoxin-disulfide reductase activity	8.47E-03
50	GO:0016671: oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor	1.02E-02
51	GO:0004702: signal transducer, downstream of receptor, with serine/threonine kinase activity	1.11E-02
52	GO:0004806: triglyceride lipase activity	1.36E-02
53	GO:0050897: cobalt ion binding	1.62E-02
54	GO:0042803: protein homodimerization activity	1.66E-02
55	GO:0005506: iron ion binding	1.71E-02
56	GO:0016706: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors	1.73E-02
57	GO:0000987: core promoter proximal region sequence-specific DNA binding	1.78E-02
58	GO:0003824: catalytic activity	1.96E-02
59	GO:0015293: symporter activity	2.24E-02
60	GO:0051287: NAD binding	2.37E-02
61	GO:0016298: lipase activity	2.62E-02
62	GO:0015171: amino acid transmembrane transporter activity	2.75E-02
63	GO:0031625: ubiquitin protein ligase binding	2.75E-02
64	GO:0003779: actin binding	3.21E-02
65	GO:0015035: protein disulfide oxidoreductase activity	3.35E-02
66	GO:0004386: helicase activity	3.49E-02
67	GO:0016740: transferase activity	4.23E-02
68	GO:0008565: protein transporter activity	4.38E-02
69	GO:0030246: carbohydrate binding	4.65E-02
70	GO:0005507: copper ion binding	4.92E-02
71	GO:0019825: oxygen binding	4.92E-02

Rank	GO Term	Adjusted P value
1	GO:0005886: plasma membrane	4.15E-05
2	GO:0016021: integral component of membrane	5.16E-05
3	GO:0005911: cell-cell junction	9.33E-05
4	GO:0031304: intrinsic component of mitochondrial inner membrane	2.20E-04
5	GO:0046861: glyoxysomal membrane	3.67E-04
6	GO:0005945: 6-phosphofructokinase complex	8.88E-04
7	GO:0005777: peroxisome	1.71E-03
8	GO:0009514: glyoxysome	2.00E-03
9	GO:0030665: clathrin-coated vesicle membrane	2.52E-03
10	GO:0017119: Golgi transport complex	2.80E-03
11	GO:0005795: Golgi stack	4.33E-03
12	GO:0016020: membrane	4.37E-03
13	GO:0005741: mitochondrial outer membrane	5.72E-03
14	GO:0005774: vacuolar membrane	7.90E-03
15	GO:0019898: extrinsic component of membrane	8.90E-03
16	GO:0005778: peroxisomal membrane	1.11E-02
17	GO:0005788: endoplasmic reticulum lumen	1.26E-02
18	GO:0031902: late endosome membrane	1.95E-02
19	GO:0090406: pollen tube	2.07E-02
20	GO:0005783: endoplasmic reticulum	2.63E-02
21	GO:0005887: integral component of plasma membrane	2.66E-02
22	GO:0005789: endoplasmic reticulum membrane	2.97E-02
23	GO:0009706: chloroplast inner membrane	3.28E-02