GO Enrichment Analysis of Co-expressed Genes with
AT3G53680
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0060416: response to growth hormone | 0.00E+00 |
| 2 | GO:0070125: mitochondrial translational elongation | 0.00E+00 |
| 3 | GO:0032194: ubiquinone biosynthetic process via 3,4-dihydroxy-5-polyprenylbenzoate | 0.00E+00 |
| 4 | GO:0070681: glutaminyl-tRNAGln biosynthesis via transamidation | 0.00E+00 |
| 5 | GO:0042254: ribosome biogenesis | 8.79E-11 |
| 6 | GO:0006412: translation | 8.81E-08 |
| 7 | GO:0016123: xanthophyll biosynthetic process | 5.43E-06 |
| 8 | GO:0015995: chlorophyll biosynthetic process | 2.88E-05 |
| 9 | GO:1904966: positive regulation of vitamin E biosynthetic process | 5.48E-05 |
| 10 | GO:1904964: positive regulation of phytol biosynthetic process | 5.48E-05 |
| 11 | GO:0042371: vitamin K biosynthetic process | 5.48E-05 |
| 12 | GO:1902458: positive regulation of stomatal opening | 5.48E-05 |
| 13 | GO:0080148: negative regulation of response to water deprivation | 1.34E-04 |
| 14 | GO:1903426: regulation of reactive oxygen species biosynthetic process | 1.34E-04 |
| 15 | GO:1902326: positive regulation of chlorophyll biosynthetic process | 1.34E-04 |
| 16 | GO:0009306: protein secretion | 2.29E-04 |
| 17 | GO:0016117: carotenoid biosynthetic process | 2.49E-04 |
| 18 | GO:0008033: tRNA processing | 2.70E-04 |
| 19 | GO:0006424: glutamyl-tRNA aminoacylation | 3.33E-04 |
| 20 | GO:0009765: photosynthesis, light harvesting | 4.45E-04 |
| 21 | GO:0006749: glutathione metabolic process | 4.45E-04 |
| 22 | GO:0010027: thylakoid membrane organization | 5.19E-04 |
| 23 | GO:0032543: mitochondrial translation | 5.66E-04 |
| 24 | GO:0010236: plastoquinone biosynthetic process | 5.66E-04 |
| 25 | GO:0045038: protein import into chloroplast thylakoid membrane | 5.66E-04 |
| 26 | GO:0016120: carotene biosynthetic process | 5.66E-04 |
| 27 | GO:0009658: chloroplast organization | 6.72E-04 |
| 28 | GO:0006655: phosphatidylglycerol biosynthetic process | 6.92E-04 |
| 29 | GO:0010190: cytochrome b6f complex assembly | 6.92E-04 |
| 30 | GO:0042372: phylloquinone biosynthetic process | 8.25E-04 |
| 31 | GO:0010019: chloroplast-nucleus signaling pathway | 8.25E-04 |
| 32 | GO:0006821: chloride transport | 9.62E-04 |
| 33 | GO:0009772: photosynthetic electron transport in photosystem II | 9.62E-04 |
| 34 | GO:0015979: photosynthesis | 1.03E-03 |
| 35 | GO:0006605: protein targeting | 1.11E-03 |
| 36 | GO:0009704: de-etiolation | 1.11E-03 |
| 37 | GO:2000070: regulation of response to water deprivation | 1.11E-03 |
| 38 | GO:0048564: photosystem I assembly | 1.11E-03 |
| 39 | GO:0042255: ribosome assembly | 1.11E-03 |
| 40 | GO:0006353: DNA-templated transcription, termination | 1.11E-03 |
| 41 | GO:0009793: embryo development ending in seed dormancy | 1.12E-03 |
| 42 | GO:0032544: plastid translation | 1.26E-03 |
| 43 | GO:0017004: cytochrome complex assembly | 1.26E-03 |
| 44 | GO:0006783: heme biosynthetic process | 1.41E-03 |
| 45 | GO:0006782: protoporphyrinogen IX biosynthetic process | 1.75E-03 |
| 46 | GO:0009073: aromatic amino acid family biosynthetic process | 1.93E-03 |
| 47 | GO:0006415: translational termination | 1.93E-03 |
| 48 | GO:0016024: CDP-diacylglycerol biosynthetic process | 2.11E-03 |
| 49 | GO:0045037: protein import into chloroplast stroma | 2.11E-03 |
| 50 | GO:0009691: cytokinin biosynthetic process | 2.30E-03 |
| 51 | GO:0009735: response to cytokinin | 2.60E-03 |
| 52 | GO:0040008: regulation of growth | 3.27E-03 |
| 53 | GO:0009741: response to brassinosteroid | 4.96E-03 |
| 54 | GO:0032502: developmental process | 6.00E-03 |
| 55 | GO:0010411: xyloglucan metabolic process | 8.29E-03 |
| 56 | GO:0018298: protein-chromophore linkage | 8.91E-03 |
| 57 | GO:0009407: toxin catabolic process | 9.54E-03 |
| 58 | GO:0048527: lateral root development | 9.86E-03 |
| 59 | GO:0030001: metal ion transport | 1.15E-02 |
| 60 | GO:0042546: cell wall biogenesis | 1.29E-02 |
| 61 | GO:0009636: response to toxic substance | 1.37E-02 |
| 62 | GO:0009790: embryo development | 2.61E-02 |
| 63 | GO:0009451: RNA modification | 2.99E-02 |
| 64 | GO:0008380: RNA splicing | 3.34E-02 |
| 65 | GO:0080167: response to karrikin | 4.68E-02 |
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0009974: zeinoxanthin epsilon hydroxylase activity | 0.00E+00 |
| 2 | GO:0000979: RNA polymerase II core promoter sequence-specific DNA binding | 0.00E+00 |
| 3 | GO:0046428: 1,4-dihydroxy-2-naphthoate octaprenyltransferase activity | 0.00E+00 |
| 4 | GO:0045435: lycopene epsilon cyclase activity | 0.00E+00 |
| 5 | GO:0019843: rRNA binding | 3.38E-12 |
| 6 | GO:0003735: structural constituent of ribosome | 6.25E-10 |
| 7 | GO:0050567: glutaminyl-tRNA synthase (glutamine-hydrolyzing) activity | 5.48E-05 |
| 8 | GO:0004853: uroporphyrinogen decarboxylase activity | 5.48E-05 |
| 9 | GO:0052381: tRNA dimethylallyltransferase activity | 5.48E-05 |
| 10 | GO:0009977: proton motive force dependent protein transmembrane transporter activity | 1.34E-04 |
| 11 | GO:0004148: dihydrolipoyl dehydrogenase activity | 2.28E-04 |
| 12 | GO:0016149: translation release factor activity, codon specific | 3.33E-04 |
| 13 | GO:0008097: 5S rRNA binding | 3.33E-04 |
| 14 | GO:0016851: magnesium chelatase activity | 3.33E-04 |
| 15 | GO:0003841: 1-acylglycerol-3-phosphate O-acyltransferase activity | 4.45E-04 |
| 16 | GO:0004659: prenyltransferase activity | 4.45E-04 |
| 17 | GO:0043495: protein anchor | 4.45E-04 |
| 18 | GO:0005247: voltage-gated chloride channel activity | 6.92E-04 |
| 19 | GO:0080030: methyl indole-3-acetate esterase activity | 6.92E-04 |
| 20 | GO:0051920: peroxiredoxin activity | 8.25E-04 |
| 21 | GO:0019899: enzyme binding | 9.62E-04 |
| 22 | GO:0016209: antioxidant activity | 1.11E-03 |
| 23 | GO:0003747: translation release factor activity | 1.41E-03 |
| 24 | GO:0031072: heat shock protein binding | 2.30E-03 |
| 25 | GO:0016740: transferase activity | 3.75E-03 |
| 26 | GO:0022891: substrate-specific transmembrane transporter activity | 4.00E-03 |
| 27 | GO:0003727: single-stranded RNA binding | 4.23E-03 |
| 28 | GO:0008080: N-acetyltransferase activity | 4.96E-03 |
| 29 | GO:0010181: FMN binding | 5.22E-03 |
| 30 | GO:0016762: xyloglucan:xyloglucosyl transferase activity | 5.74E-03 |
| 31 | GO:0016168: chlorophyll binding | 7.69E-03 |
| 32 | GO:0016798: hydrolase activity, acting on glycosyl bonds | 8.29E-03 |
| 33 | GO:0015450: P-P-bond-hydrolysis-driven protein transmembrane transporter activity | 8.91E-03 |
| 34 | GO:0003746: translation elongation factor activity | 1.05E-02 |
| 35 | GO:0004364: glutathione transferase activity | 1.22E-02 |
| 36 | GO:0003755: peptidyl-prolyl cis-trans isomerase activity | 1.40E-02 |
| 37 | GO:0003690: double-stranded DNA binding | 1.59E-02 |
| 38 | GO:0051082: unfolded protein binding | 1.99E-02 |
| 39 | GO:0016746: transferase activity, transferring acyl groups | 2.04E-02 |
| 40 | GO:0016705: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen | 2.38E-02 |
| 41 | GO:0008565: protein transporter activity | 2.66E-02 |
| 42 | GO:0005509: calcium ion binding | 3.21E-02 |
| 43 | GO:0042802: identical protein binding | 3.49E-02 |
| 44 | GO:0000287: magnesium ion binding | 3.96E-02 |
| 45 | GO:0004601: peroxidase activity | 4.01E-02 |
| 46 | GO:0016788: hydrolase activity, acting on ester bonds | 4.07E-02 |
| 47 | GO:0016491: oxidoreductase activity | 4.57E-02 |
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0009507: chloroplast | 7.67E-30 |
| 2 | GO:0009941: chloroplast envelope | 1.30E-16 |
| 3 | GO:0009570: chloroplast stroma | 2.13E-15 |
| 4 | GO:0009535: chloroplast thylakoid membrane | 6.33E-11 |
| 5 | GO:0005840: ribosome | 1.05E-08 |
| 6 | GO:0009579: thylakoid | 4.31E-07 |
| 7 | GO:0009543: chloroplast thylakoid lumen | 4.71E-07 |
| 8 | GO:0030956: glutamyl-tRNA(Gln) amidotransferase complex | 5.48E-05 |
| 9 | GO:0031977: thylakoid lumen | 6.42E-05 |
| 10 | GO:0031969: chloroplast membrane | 9.64E-05 |
| 11 | GO:0042651: thylakoid membrane | 1.57E-04 |
| 12 | GO:0009654: photosystem II oxygen evolving complex | 1.57E-04 |
| 13 | GO:0033281: TAT protein transport complex | 2.28E-04 |
| 14 | GO:0010007: magnesium chelatase complex | 2.28E-04 |
| 15 | GO:0019898: extrinsic component of membrane | 3.37E-04 |
| 16 | GO:0034707: chloride channel complex | 6.92E-04 |
| 17 | GO:0009533: chloroplast stromal thylakoid | 9.62E-04 |
| 18 | GO:0000311: plastid large ribosomal subunit | 2.11E-03 |
| 19 | GO:0030095: chloroplast photosystem II | 2.49E-03 |
| 20 | GO:0015935: small ribosomal subunit | 3.54E-03 |
| 21 | GO:0009523: photosystem II | 5.48E-03 |
| 22 | GO:0022625: cytosolic large ribosomal subunit | 6.88E-03 |
| 23 | GO:0009707: chloroplast outer membrane | 8.91E-03 |
| 24 | GO:0009536: plastid | 9.23E-03 |
| 25 | GO:0015934: large ribosomal subunit | 9.86E-03 |
| 26 | GO:0022626: cytosolic ribosome | 1.64E-02 |
| 27 | GO:0009706: chloroplast inner membrane | 1.99E-02 |
| 28 | GO:0009534: chloroplast thylakoid | 2.08E-02 |
| 29 | GO:0010287: plastoglobule | 2.25E-02 |
| 30 | GO:0005623: cell | 2.38E-02 |
| 31 | GO:0005759: mitochondrial matrix | 2.75E-02 |