co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT3G53430

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0044843: cell cycle G1/S phase transition	0.00E+00
2	GO:0000494: box C/D snoRNA 3'-end processing	0.00E+00
3	GO:1990258: histone glutamine methylation	0.00E+00
4	GO:0006412: translation	3.46E-103
5	GO:0042254: ribosome biogenesis	2.98E-46
6	GO:0000027: ribosomal large subunit assembly	2.00E-13
7	GO:0000028: ribosomal small subunit assembly	2.28E-11
8	GO:0009735: response to cytokinin	5.71E-08
9	GO:0006364: rRNA processing	7.68E-08
10	GO:0031167: rRNA methylation	2.41E-05
11	GO:0009793: embryo development ending in seed dormancy	4.04E-05
12	GO:0001510: RNA methylation	1.12E-04
13	GO:0006407: rRNA export from nucleus	1.33E-04
14	GO:0030490: maturation of SSU-rRNA	1.33E-04
15	GO:0000461: endonucleolytic cleavage to generate mature 3'-end of SSU-rRNA from (SSU-rRNA, 5.8S rRNA, LSU-rRNA)	1.33E-04
16	GO:0000447: endonucleolytic cleavage in ITS1 to separate SSU-rRNA from 5.8S rRNA and LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)	1.33E-04
17	GO:0010162: seed dormancy process	1.96E-04
18	GO:0006626: protein targeting to mitochondrion	3.02E-04
19	GO:0045041: protein import into mitochondrial intermembrane space	3.07E-04
20	GO:0009967: positive regulation of signal transduction	3.07E-04
21	GO:0009944: polarity specification of adaxial/abaxial axis	4.74E-04
22	GO:1902626: assembly of large subunit precursor of preribosome	5.06E-04
23	GO:0002181: cytoplasmic translation	5.06E-04
24	GO:0010476: gibberellin mediated signaling pathway	5.06E-04
25	GO:0042256: mature ribosome assembly	5.06E-04
26	GO:0090506: axillary shoot meristem initiation	5.06E-04
27	GO:0007005: mitochondrion organization	6.25E-04
28	GO:0009294: DNA mediated transformation	6.80E-04
29	GO:0006986: response to unfolded protein	7.24E-04
30	GO:0070301: cellular response to hydrogen peroxide	7.24E-04
31	GO:0051085: chaperone mediated protein folding requiring cofactor	7.24E-04
32	GO:0006241: CTP biosynthetic process	7.24E-04
33	GO:0006165: nucleoside diphosphate phosphorylation	7.24E-04
34	GO:0006228: UTP biosynthetic process	7.24E-04
35	GO:0051131: chaperone-mediated protein complex assembly	7.24E-04
36	GO:0008033: tRNA processing	8.59E-04
37	GO:2000032: regulation of secondary shoot formation	9.59E-04
38	GO:0042274: ribosomal small subunit biogenesis	9.59E-04
39	GO:0006183: GTP biosynthetic process	9.59E-04
40	GO:0032502: developmental process	1.20E-03
41	GO:0071493: cellular response to UV-B	1.21E-03
42	GO:0006458: 'de novo' protein folding	1.78E-03
43	GO:0042026: protein refolding	1.78E-03
44	GO:0001558: regulation of cell growth	2.77E-03
45	GO:0000387: spliceosomal snRNP assembly	3.50E-03
46	GO:0046686: response to cadmium ion	4.65E-03
47	GO:0006820: anion transport	4.72E-03
48	GO:0010229: inflorescence development	5.15E-03
49	GO:0010102: lateral root morphogenesis	5.15E-03
50	GO:0048467: gynoecium development	5.60E-03
51	GO:0030150: protein import into mitochondrial matrix	7.01E-03
52	GO:0051302: regulation of cell division	7.51E-03
53	GO:0061077: chaperone-mediated protein folding	8.02E-03
54	GO:0040007: growth	9.08E-03
55	GO:0071215: cellular response to abscisic acid stimulus	9.08E-03
56	GO:0010501: RNA secondary structure unwinding	1.08E-02
57	GO:0000413: protein peptidyl-prolyl isomerization	1.08E-02
58	GO:0009749: response to glucose	1.25E-02
59	GO:0009791: post-embryonic development	1.25E-02
60	GO:0009409: response to cold	1.35E-02
61	GO:0010252: auxin homeostasis	1.51E-02
62	GO:0006811: ion transport	2.21E-02
63	GO:0010043: response to zinc ion	2.29E-02
64	GO:0008283: cell proliferation	2.92E-02
65	GO:0009644: response to high light intensity	3.09E-02
66	GO:0009965: leaf morphogenesis	3.18E-02
67	GO:0009408: response to heat	3.19E-02
68	GO:0042787: protein ubiquitination involved in ubiquitin-dependent protein catabolic process	3.35E-02
69	GO:0010224: response to UV-B	3.71E-02
70	GO:0006417: regulation of translation	3.89E-02
71	GO:0009620: response to fungus	4.36E-02
72	GO:0016569: covalent chromatin modification	4.45E-02
73	GO:0009734: auxin-activated signaling pathway	4.48E-02

Rank	GO Term	Adjusted P value
1	GO:1990259: histone-glutamine methyltransferase activity	0.00E+00
2	GO:0016018: cyclosporin A binding	0.00E+00
3	GO:0003735: structural constituent of ribosome	5.75E-119
4	GO:0003729: mRNA binding	2.19E-33
5	GO:0008649: rRNA methyltransferase activity	3.35E-06
6	GO:0019843: rRNA binding	1.04E-05
7	GO:0030515: snoRNA binding	6.86E-05
8	GO:0003723: RNA binding	1.42E-04
9	GO:0005078: MAP-kinase scaffold activity	3.07E-04
10	GO:0004407: histone deacetylase activity	4.74E-04
11	GO:0070180: large ribosomal subunit rRNA binding	5.06E-04
12	GO:0032947: protein complex scaffold	5.06E-04
13	GO:0004550: nucleoside diphosphate kinase activity	7.24E-04
14	GO:0008097: 5S rRNA binding	7.24E-04
15	GO:0015450: P-P-bond-hydrolysis-driven protein transmembrane transporter activity	2.09E-03
16	GO:0008235: metalloexopeptidase activity	2.09E-03
17	GO:0015288: porin activity	2.42E-03
18	GO:0008308: voltage-gated anion channel activity	2.77E-03
19	GO:0044183: protein binding involved in protein folding	4.30E-03
20	GO:0004129: cytochrome-c oxidase activity	4.30E-03
21	GO:0015266: protein channel activity	5.15E-03
22	GO:0051082: unfolded protein binding	6.48E-03
23	GO:0008026: ATP-dependent helicase activity	6.87E-03
24	GO:0051087: chaperone binding	7.51E-03
25	GO:0046872: metal ion binding	1.44E-02
26	GO:0004004: ATP-dependent RNA helicase activity	1.92E-02
27	GO:0005507: copper ion binding	2.08E-02
28	GO:0003746: translation elongation factor activity	2.44E-02
29	GO:0003755: peptidyl-prolyl cis-trans isomerase activity	3.26E-02

Rank	GO Term	Adjusted P value
1	GO:0043186: P granule	0.00E+00
2	GO:0005840: ribosome	1.87E-85
3	GO:0022625: cytosolic large ribosomal subunit	5.50E-85
4	GO:0022626: cytosolic ribosome	7.16E-82
5	GO:0005730: nucleolus	5.67E-44
6	GO:0022627: cytosolic small ribosomal subunit	3.36E-43
7	GO:0005737: cytoplasm	9.38E-30
8	GO:0005829: cytosol	4.57E-26
9	GO:0009506: plasmodesma	1.29E-23
10	GO:0015934: large ribosomal subunit	4.48E-18
11	GO:0005774: vacuolar membrane	4.26E-14
12	GO:0005618: cell wall	2.20E-10
13	GO:0005773: vacuole	1.73E-09
14	GO:0016020: membrane	1.12E-08
15	GO:0015935: small ribosomal subunit	4.91E-07
16	GO:0005886: plasma membrane	2.59E-06
17	GO:0031428: box C/D snoRNP complex	3.63E-05
18	GO:0005742: mitochondrial outer membrane translocase complex	1.12E-04
19	GO:0030686: 90S preribosome	1.33E-04
20	GO:0015030: Cajal body	1.65E-04
21	GO:0032040: small-subunit processome	2.64E-04
22	GO:0009507: chloroplast	4.78E-04
23	GO:0034719: SMN-Sm protein complex	5.06E-04
24	GO:0005682: U5 snRNP	9.59E-04
25	GO:0005687: U4 snRNP	1.21E-03
26	GO:0097526: spliceosomal tri-snRNP complex	1.21E-03
27	GO:0005746: mitochondrial respiratory chain	1.21E-03
28	GO:0005689: U12-type spliceosomal complex	1.78E-03
29	GO:0071004: U2-type prespliceosome	2.42E-03
30	GO:0046930: pore complex	2.77E-03
31	GO:0005685: U1 snRNP	3.13E-03
32	GO:0071011: precatalytic spliceosome	3.50E-03
33	GO:0005686: U2 snRNP	3.89E-03
34	GO:0071013: catalytic step 2 spliceosome	4.30E-03
35	GO:0019013: viral nucleocapsid	5.15E-03
36	GO:0005758: mitochondrial intermembrane space	7.01E-03
37	GO:0005741: mitochondrial outer membrane	8.02E-03
38	GO:0005759: mitochondrial matrix	1.02E-02
39	GO:0016592: mediator complex	1.38E-02
40	GO:0030529: intracellular ribonucleoprotein complex	1.71E-02
41	GO:0005622: intracellular	2.74E-02
42	GO:0005743: mitochondrial inner membrane	2.97E-02
43	GO:0005681: spliceosomal complex	4.07E-02
44	GO:0005834: heterotrimeric G-protein complex	4.26E-02
45	GO:0005732: small nucleolar ribonucleoprotein complex	4.94E-02