GO Enrichment Analysis of Co-expressed Genes with
AT3G53260
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:1901918: negative regulation of exoribonuclease activity | 0.00E+00 |
| 2 | GO:0061635: regulation of protein complex stability | 0.00E+00 |
| 3 | GO:0006428: isoleucyl-tRNA aminoacylation | 0.00E+00 |
| 4 | GO:0046471: phosphatidylglycerol metabolic process | 0.00E+00 |
| 5 | GO:0016553: base conversion or substitution editing | 0.00E+00 |
| 6 | GO:0006399: tRNA metabolic process | 0.00E+00 |
| 7 | GO:0006412: translation | 1.17E-08 |
| 8 | GO:0009735: response to cytokinin | 9.54E-06 |
| 9 | GO:0010207: photosystem II assembly | 1.02E-05 |
| 10 | GO:0006636: unsaturated fatty acid biosynthetic process | 1.50E-05 |
| 11 | GO:0010114: response to red light | 2.65E-05 |
| 12 | GO:0042549: photosystem II stabilization | 3.53E-05 |
| 13 | GO:0015979: photosynthesis | 1.23E-04 |
| 14 | GO:0043489: RNA stabilization | 1.31E-04 |
| 15 | GO:0042371: vitamin K biosynthetic process | 1.31E-04 |
| 16 | GO:0006779: porphyrin-containing compound biosynthetic process | 1.62E-04 |
| 17 | GO:0015995: chlorophyll biosynthetic process | 1.66E-04 |
| 18 | GO:0006782: protoporphyrinogen IX biosynthetic process | 1.92E-04 |
| 19 | GO:0030388: fructose 1,6-bisphosphate metabolic process | 3.03E-04 |
| 20 | GO:0034755: iron ion transmembrane transport | 3.03E-04 |
| 21 | GO:0080151: positive regulation of salicylic acid mediated signaling pathway | 3.03E-04 |
| 22 | GO:0042254: ribosome biogenesis | 4.92E-04 |
| 23 | GO:0006011: UDP-glucose metabolic process | 4.99E-04 |
| 24 | GO:0006000: fructose metabolic process | 4.99E-04 |
| 25 | GO:0006013: mannose metabolic process | 4.99E-04 |
| 26 | GO:0006518: peptide metabolic process | 4.99E-04 |
| 27 | GO:0006696: ergosterol biosynthetic process | 4.99E-04 |
| 28 | GO:0005977: glycogen metabolic process | 4.99E-04 |
| 29 | GO:0051513: regulation of monopolar cell growth | 7.14E-04 |
| 30 | GO:2001141: regulation of RNA biosynthetic process | 7.14E-04 |
| 31 | GO:1902476: chloride transmembrane transport | 7.14E-04 |
| 32 | GO:0019676: ammonia assimilation cycle | 9.47E-04 |
| 33 | GO:0015976: carbon utilization | 9.47E-04 |
| 34 | GO:0015994: chlorophyll metabolic process | 9.47E-04 |
| 35 | GO:0006542: glutamine biosynthetic process | 9.47E-04 |
| 36 | GO:0009247: glycolipid biosynthetic process | 1.20E-03 |
| 37 | GO:0006564: L-serine biosynthetic process | 1.20E-03 |
| 38 | GO:0045038: protein import into chloroplast thylakoid membrane | 1.20E-03 |
| 39 | GO:0032973: amino acid export | 1.47E-03 |
| 40 | GO:0010942: positive regulation of cell death | 1.47E-03 |
| 41 | GO:0010027: thylakoid membrane organization | 1.58E-03 |
| 42 | GO:0007623: circadian rhythm | 1.67E-03 |
| 43 | GO:0000462: maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) | 1.76E-03 |
| 44 | GO:0009854: oxidative photosynthetic carbon pathway | 1.76E-03 |
| 45 | GO:0010019: chloroplast-nucleus signaling pathway | 1.76E-03 |
| 46 | GO:0018298: protein-chromophore linkage | 2.05E-03 |
| 47 | GO:0009610: response to symbiotic fungus | 2.06E-03 |
| 48 | GO:0043090: amino acid import | 2.06E-03 |
| 49 | GO:0050829: defense response to Gram-negative bacterium | 2.06E-03 |
| 50 | GO:0006821: chloride transport | 2.06E-03 |
| 51 | GO:0052543: callose deposition in cell wall | 2.39E-03 |
| 52 | GO:0042255: ribosome assembly | 2.39E-03 |
| 53 | GO:0006402: mRNA catabolic process | 2.39E-03 |
| 54 | GO:0009850: auxin metabolic process | 2.39E-03 |
| 55 | GO:0006605: protein targeting | 2.39E-03 |
| 56 | GO:0019375: galactolipid biosynthetic process | 2.39E-03 |
| 57 | GO:0009231: riboflavin biosynthetic process | 2.39E-03 |
| 58 | GO:0009637: response to blue light | 2.59E-03 |
| 59 | GO:0006002: fructose 6-phosphate metabolic process | 2.73E-03 |
| 60 | GO:0071482: cellular response to light stimulus | 2.73E-03 |
| 61 | GO:0009657: plastid organization | 2.73E-03 |
| 62 | GO:0009658: chloroplast organization | 2.90E-03 |
| 63 | GO:0009821: alkaloid biosynthetic process | 3.08E-03 |
| 64 | GO:0080144: amino acid homeostasis | 3.08E-03 |
| 65 | GO:0006783: heme biosynthetic process | 3.08E-03 |
| 66 | GO:0010205: photoinhibition | 3.46E-03 |
| 67 | GO:0009409: response to cold | 3.50E-03 |
| 68 | GO:0009644: response to high light intensity | 3.59E-03 |
| 69 | GO:0006949: syncytium formation | 3.84E-03 |
| 70 | GO:0009299: mRNA transcription | 3.84E-03 |
| 71 | GO:0009698: phenylpropanoid metabolic process | 4.24E-03 |
| 72 | GO:0009773: photosynthetic electron transport in photosystem I | 4.24E-03 |
| 73 | GO:0019684: photosynthesis, light reaction | 4.24E-03 |
| 74 | GO:0009089: lysine biosynthetic process via diaminopimelate | 4.24E-03 |
| 75 | GO:0043085: positive regulation of catalytic activity | 4.24E-03 |
| 76 | GO:0006879: cellular iron ion homeostasis | 4.24E-03 |
| 77 | GO:0006352: DNA-templated transcription, initiation | 4.24E-03 |
| 78 | GO:0009750: response to fructose | 4.24E-03 |
| 79 | GO:0005983: starch catabolic process | 4.65E-03 |
| 80 | GO:0015706: nitrate transport | 4.65E-03 |
| 81 | GO:0009725: response to hormone | 5.08E-03 |
| 82 | GO:0006094: gluconeogenesis | 5.08E-03 |
| 83 | GO:0005986: sucrose biosynthetic process | 5.08E-03 |
| 84 | GO:0006006: glucose metabolic process | 5.08E-03 |
| 85 | GO:2000028: regulation of photoperiodism, flowering | 5.08E-03 |
| 86 | GO:0019253: reductive pentose-phosphate cycle | 5.52E-03 |
| 87 | GO:0010167: response to nitrate | 5.97E-03 |
| 88 | GO:0042545: cell wall modification | 6.16E-03 |
| 89 | GO:0006396: RNA processing | 6.54E-03 |
| 90 | GO:0006418: tRNA aminoacylation for protein translation | 7.40E-03 |
| 91 | GO:0009768: photosynthesis, light harvesting in photosystem I | 7.40E-03 |
| 92 | GO:0019915: lipid storage | 7.91E-03 |
| 93 | GO:0031408: oxylipin biosynthetic process | 7.91E-03 |
| 94 | GO:0030433: ubiquitin-dependent ERAD pathway | 8.42E-03 |
| 95 | GO:0006284: base-excision repair | 9.49E-03 |
| 96 | GO:0009306: protein secretion | 9.49E-03 |
| 97 | GO:0016117: carotenoid biosynthetic process | 1.00E-02 |
| 98 | GO:0000413: protein peptidyl-prolyl isomerization | 1.06E-02 |
| 99 | GO:0045490: pectin catabolic process | 1.10E-02 |
| 100 | GO:0009451: RNA modification | 1.12E-02 |
| 101 | GO:0032502: developmental process | 1.36E-02 |
| 102 | GO:0009828: plant-type cell wall loosening | 1.49E-02 |
| 103 | GO:0046686: response to cadmium ion | 1.61E-02 |
| 104 | GO:0009826: unidimensional cell growth | 1.64E-02 |
| 105 | GO:0042128: nitrate assimilation | 1.82E-02 |
| 106 | GO:0016311: dephosphorylation | 1.96E-02 |
| 107 | GO:0048481: plant ovule development | 2.03E-02 |
| 108 | GO:0000160: phosphorelay signal transduction system | 2.11E-02 |
| 109 | GO:0010218: response to far red light | 2.18E-02 |
| 110 | GO:0007169: transmembrane receptor protein tyrosine kinase signaling pathway | 2.19E-02 |
| 111 | GO:0009631: cold acclimation | 2.25E-02 |
| 112 | GO:0010119: regulation of stomatal movement | 2.25E-02 |
| 113 | GO:0007568: aging | 2.25E-02 |
| 114 | GO:0009853: photorespiration | 2.41E-02 |
| 115 | GO:0045087: innate immune response | 2.41E-02 |
| 116 | GO:0009744: response to sucrose | 2.88E-02 |
| 117 | GO:0009793: embryo development ending in seed dormancy | 2.90E-02 |
| 118 | GO:0000209: protein polyubiquitination | 2.96E-02 |
| 119 | GO:0042742: defense response to bacterium | 3.14E-02 |
| 120 | GO:0006397: mRNA processing | 3.26E-02 |
| 121 | GO:0009664: plant-type cell wall organization | 3.39E-02 |
| 122 | GO:0009736: cytokinin-activated signaling pathway | 3.56E-02 |
| 123 | GO:0009733: response to auxin | 3.63E-02 |
| 124 | GO:0006417: regulation of translation | 3.83E-02 |
| 125 | GO:0055114: oxidation-reduction process | 3.89E-02 |
| 126 | GO:0006096: glycolytic process | 4.01E-02 |
| 127 | GO:0009626: plant-type hypersensitive response | 4.20E-02 |
| 128 | GO:0009740: gibberellic acid mediated signaling pathway | 4.39E-02 |
| 129 | GO:0009742: brassinosteroid mediated signaling pathway | 4.77E-02 |
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0016767: geranylgeranyl-diphosphate geranylgeranyltransferase activity | 0.00E+00 |
| 2 | GO:0052637: delta 3-trans-hexadecenoic acid phosphatidylglycerol desaturase activity | 0.00E+00 |
| 3 | GO:0016754: sinapoylglucose-malate O-sinapoyltransferase activity | 0.00E+00 |
| 4 | GO:0004822: isoleucine-tRNA ligase activity | 0.00E+00 |
| 5 | GO:0046905: phytoene synthase activity | 0.00E+00 |
| 6 | GO:0008887: glycerate kinase activity | 0.00E+00 |
| 7 | GO:0009979: 16:0 monogalactosyldiacylglycerol desaturase activity | 0.00E+00 |
| 8 | GO:0008807: carboxyvinyl-carboxyphosphonate phosphorylmutase activity | 0.00E+00 |
| 9 | GO:0008935: 1,4-dihydroxy-2-naphthoyl-CoA synthase activity | 0.00E+00 |
| 10 | GO:0008942: nitrite reductase [NAD(P)H] activity | 0.00E+00 |
| 11 | GO:0019843: rRNA binding | 2.75E-13 |
| 12 | GO:0003735: structural constituent of ribosome | 2.40E-10 |
| 13 | GO:0003755: peptidyl-prolyl cis-trans isomerase activity | 3.60E-05 |
| 14 | GO:0016717: oxidoreductase activity, acting on paired donors, with oxidation of a pair of donors resulting in the reduction of molecular oxygen to two molecules of water | 1.09E-04 |
| 15 | GO:0004729: oxygen-dependent protoporphyrinogen oxidase activity | 1.31E-04 |
| 16 | GO:0046906: tetrapyrrole binding | 1.31E-04 |
| 17 | GO:0004655: porphobilinogen synthase activity | 1.31E-04 |
| 18 | GO:0009671: nitrate:proton symporter activity | 1.31E-04 |
| 19 | GO:0051996: squalene synthase activity | 1.31E-04 |
| 20 | GO:0052638: indole-3-butyrate beta-glucosyltransferase activity | 1.31E-04 |
| 21 | GO:0004617: phosphoglycerate dehydrogenase activity | 3.03E-04 |
| 22 | GO:0008686: 3,4-dihydroxy-2-butanone-4-phosphate synthase activity | 3.03E-04 |
| 23 | GO:0046509: 1,2-diacylglycerol 3-beta-galactosyltransferase activity | 3.03E-04 |
| 24 | GO:0042132: fructose 1,6-bisphosphate 1-phosphatase activity | 3.03E-04 |
| 25 | GO:0047158: sinapoylglucose-sinapoylglucose O-sinapoyltransferase activity | 3.03E-04 |
| 26 | GO:0047100: glyceraldehyde-3-phosphate dehydrogenase (NADP+) (phosphorylating) activity | 3.03E-04 |
| 27 | GO:0008839: 4-hydroxy-tetrahydrodipicolinate reductase | 3.03E-04 |
| 28 | GO:0004310: farnesyl-diphosphate farnesyltransferase activity | 3.03E-04 |
| 29 | GO:0047746: chlorophyllase activity | 3.03E-04 |
| 30 | GO:0042389: omega-3 fatty acid desaturase activity | 3.03E-04 |
| 31 | GO:0043425: bHLH transcription factor binding | 3.03E-04 |
| 32 | GO:0008266: poly(U) RNA binding | 3.34E-04 |
| 33 | GO:0005528: FK506 binding | 4.64E-04 |
| 34 | GO:0002161: aminoacyl-tRNA editing activity | 4.99E-04 |
| 35 | GO:0003935: GTP cyclohydrolase II activity | 4.99E-04 |
| 36 | GO:0003983: UTP:glucose-1-phosphate uridylyltransferase activity | 4.99E-04 |
| 37 | GO:0035250: UDP-galactosyltransferase activity | 7.14E-04 |
| 38 | GO:0004365: glyceraldehyde-3-phosphate dehydrogenase (NAD+) (phosphorylating) activity | 7.14E-04 |
| 39 | GO:0003727: single-stranded RNA binding | 7.24E-04 |
| 40 | GO:0016987: sigma factor activity | 9.47E-04 |
| 41 | GO:0005253: anion channel activity | 9.47E-04 |
| 42 | GO:0001053: plastid sigma factor activity | 9.47E-04 |
| 43 | GO:0008725: DNA-3-methyladenine glycosylase activity | 1.20E-03 |
| 44 | GO:0016773: phosphotransferase activity, alcohol group as acceptor | 1.20E-03 |
| 45 | GO:0004356: glutamate-ammonia ligase activity | 1.20E-03 |
| 46 | GO:0005247: voltage-gated chloride channel activity | 1.47E-03 |
| 47 | GO:0016168: chlorophyll binding | 1.67E-03 |
| 48 | GO:0004559: alpha-mannosidase activity | 1.76E-03 |
| 49 | GO:0019899: enzyme binding | 2.06E-03 |
| 50 | GO:0004222: metalloendopeptidase activity | 2.26E-03 |
| 51 | GO:0005381: iron ion transmembrane transporter activity | 3.46E-03 |
| 52 | GO:0016844: strictosidine synthase activity | 3.46E-03 |
| 53 | GO:0015112: nitrate transmembrane transporter activity | 3.46E-03 |
| 54 | GO:0051287: NAD binding | 4.02E-03 |
| 55 | GO:0000049: tRNA binding | 4.65E-03 |
| 56 | GO:0045330: aspartyl esterase activity | 4.95E-03 |
| 57 | GO:0004089: carbonate dehydratase activity | 5.08E-03 |
| 58 | GO:0008146: sulfotransferase activity | 5.97E-03 |
| 59 | GO:0030599: pectinesterase activity | 5.98E-03 |
| 60 | GO:0031409: pigment binding | 6.43E-03 |
| 61 | GO:0022891: substrate-specific transmembrane transporter activity | 8.95E-03 |
| 62 | GO:0004812: aminoacyl-tRNA ligase activity | 1.00E-02 |
| 63 | GO:0008194: UDP-glycosyltransferase activity | 1.23E-02 |
| 64 | GO:0003743: translation initiation factor activity | 1.28E-02 |
| 65 | GO:0000156: phosphorelay response regulator activity | 1.42E-02 |
| 66 | GO:0016597: amino acid binding | 1.62E-02 |
| 67 | GO:0015450: P-P-bond-hydrolysis-driven protein transmembrane transporter activity | 2.03E-02 |
| 68 | GO:0050661: NADP binding | 2.64E-02 |
| 69 | GO:0003723: RNA binding | 2.74E-02 |
| 70 | GO:0004185: serine-type carboxypeptidase activity | 2.88E-02 |
| 71 | GO:0051537: 2 iron, 2 sulfur cluster binding | 3.05E-02 |
| 72 | GO:0043621: protein self-association | 3.05E-02 |
| 73 | GO:0003899: DNA-directed 5'-3' RNA polymerase activity | 3.56E-02 |
| 74 | GO:0003690: double-stranded DNA binding | 3.65E-02 |
| 75 | GO:0015171: amino acid transmembrane transporter activity | 3.83E-02 |
| 76 | GO:0031625: ubiquitin protein ligase binding | 3.83E-02 |
| 77 | GO:0016747: transferase activity, transferring acyl groups other than amino-acyl groups | 4.11E-02 |
| 78 | GO:0080044: quercetin 7-O-glucosyltransferase activity | 4.29E-02 |
| 79 | GO:0080043: quercetin 3-O-glucosyltransferase activity | 4.29E-02 |
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0005943: phosphatidylinositol 3-kinase complex, class IA | 0.00E+00 |
| 2 | GO:0044391: ribosomal subunit | 0.00E+00 |
| 3 | GO:0009507: chloroplast | 1.25E-38 |
| 4 | GO:0009570: chloroplast stroma | 3.52E-23 |
| 5 | GO:0009941: chloroplast envelope | 1.65E-22 |
| 6 | GO:0009535: chloroplast thylakoid membrane | 4.31E-17 |
| 7 | GO:0009534: chloroplast thylakoid | 6.96E-10 |
| 8 | GO:0000311: plastid large ribosomal subunit | 7.26E-08 |
| 9 | GO:0009579: thylakoid | 1.66E-07 |
| 10 | GO:0005840: ribosome | 1.84E-06 |
| 11 | GO:0031969: chloroplast membrane | 8.33E-06 |
| 12 | GO:0000312: plastid small ribosomal subunit | 1.02E-05 |
| 13 | GO:0009706: chloroplast inner membrane | 9.19E-05 |
| 14 | GO:0009547: plastid ribosome | 1.31E-04 |
| 15 | GO:0009543: chloroplast thylakoid lumen | 1.37E-04 |
| 16 | GO:0042170: plastid membrane | 3.03E-04 |
| 17 | GO:0080085: signal recognition particle, chloroplast targeting | 3.03E-04 |
| 18 | GO:0042646: plastid nucleoid | 7.14E-04 |
| 19 | GO:0009522: photosystem I | 9.69E-04 |
| 20 | GO:0009523: photosystem II | 1.04E-03 |
| 21 | GO:0010287: plastoglobule | 1.05E-03 |
| 22 | GO:0009295: nucleoid | 1.41E-03 |
| 23 | GO:0034707: chloride channel complex | 1.47E-03 |
| 24 | GO:0030529: intracellular ribonucleoprotein complex | 1.58E-03 |
| 25 | GO:0016363: nuclear matrix | 1.76E-03 |
| 26 | GO:0005762: mitochondrial large ribosomal subunit | 1.76E-03 |
| 27 | GO:0015934: large ribosomal subunit | 2.37E-03 |
| 28 | GO:0005786: signal recognition particle, endoplasmic reticulum targeting | 2.73E-03 |
| 29 | GO:0009505: plant-type cell wall | 3.06E-03 |
| 30 | GO:0010598: NAD(P)H dehydrogenase complex (plastoquinone) | 3.08E-03 |
| 31 | GO:0005763: mitochondrial small ribosomal subunit | 3.08E-03 |
| 32 | GO:0016020: membrane | 4.22E-03 |
| 33 | GO:0019013: viral nucleocapsid | 5.08E-03 |
| 34 | GO:0030076: light-harvesting complex | 5.97E-03 |
| 35 | GO:0015935: small ribosomal subunit | 7.91E-03 |
| 36 | GO:0071944: cell periphery | 1.42E-02 |
| 37 | GO:0022627: cytosolic small ribosomal subunit | 1.46E-02 |
| 38 | GO:0010319: stromule | 1.55E-02 |
| 39 | GO:0031977: thylakoid lumen | 2.72E-02 |
| 40 | GO:0043231: intracellular membrane-bounded organelle | 3.44E-02 |