GO Enrichment Analysis of Co-expressed Genes with
AT3G53020
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0044843: cell cycle G1/S phase transition | 0.00E+00 |
| 2 | GO:0000494: box C/D snoRNA 3'-end processing | 0.00E+00 |
| 3 | GO:0034050: host programmed cell death induced by symbiont | 0.00E+00 |
| 4 | GO:0045047: protein targeting to ER | 0.00E+00 |
| 5 | GO:0071731: response to nitric oxide | 0.00E+00 |
| 6 | GO:0031564: transcription antitermination | 0.00E+00 |
| 7 | GO:1990258: histone glutamine methylation | 0.00E+00 |
| 8 | GO:0019307: mannose biosynthetic process | 0.00E+00 |
| 9 | GO:0072321: chaperone-mediated protein transport | 0.00E+00 |
| 10 | GO:0006412: translation | 3.46E-55 |
| 11 | GO:0042254: ribosome biogenesis | 1.69E-27 |
| 12 | GO:0009735: response to cytokinin | 3.60E-07 |
| 13 | GO:0046686: response to cadmium ion | 3.99E-06 |
| 14 | GO:0006626: protein targeting to mitochondrion | 5.86E-06 |
| 15 | GO:0031167: rRNA methylation | 1.85E-05 |
| 16 | GO:0007005: mitochondrion organization | 2.09E-05 |
| 17 | GO:0006364: rRNA processing | 3.25E-05 |
| 18 | GO:0000028: ribosomal small subunit assembly | 6.94E-05 |
| 19 | GO:0001510: RNA methylation | 8.78E-05 |
| 20 | GO:0006413: translational initiation | 1.51E-04 |
| 21 | GO:0045901: positive regulation of translational elongation | 2.65E-04 |
| 22 | GO:0006123: mitochondrial electron transport, cytochrome c to oxygen | 2.65E-04 |
| 23 | GO:0045041: protein import into mitochondrial intermembrane space | 2.65E-04 |
| 24 | GO:0006452: translational frameshifting | 2.65E-04 |
| 25 | GO:0045905: positive regulation of translational termination | 2.65E-04 |
| 26 | GO:0009651: response to salt stress | 2.98E-04 |
| 27 | GO:0000027: ribosomal large subunit assembly | 3.83E-04 |
| 28 | GO:0045039: protein import into mitochondrial inner membrane | 4.38E-04 |
| 29 | GO:0006013: mannose metabolic process | 4.38E-04 |
| 30 | GO:0006556: S-adenosylmethionine biosynthetic process | 4.38E-04 |
| 31 | GO:0002181: cytoplasmic translation | 4.38E-04 |
| 32 | GO:0009298: GDP-mannose biosynthetic process | 6.29E-04 |
| 33 | GO:0070301: cellular response to hydrogen peroxide | 6.29E-04 |
| 34 | GO:0051085: chaperone mediated protein folding requiring cofactor | 6.29E-04 |
| 35 | GO:0006241: CTP biosynthetic process | 6.29E-04 |
| 36 | GO:0006165: nucleoside diphosphate phosphorylation | 6.29E-04 |
| 37 | GO:0006228: UTP biosynthetic process | 6.29E-04 |
| 38 | GO:0051131: chaperone-mediated protein complex assembly | 6.29E-04 |
| 39 | GO:0006986: response to unfolded protein | 6.29E-04 |
| 40 | GO:0008033: tRNA processing | 6.98E-04 |
| 41 | GO:0006183: GTP biosynthetic process | 8.35E-04 |
| 42 | GO:0032502: developmental process | 9.77E-04 |
| 43 | GO:0071493: cellular response to UV-B | 1.05E-03 |
| 44 | GO:0016444: somatic cell DNA recombination | 1.54E-03 |
| 45 | GO:0042026: protein refolding | 1.54E-03 |
| 46 | GO:0006458: 'de novo' protein folding | 1.54E-03 |
| 47 | GO:0009793: embryo development ending in seed dormancy | 1.75E-03 |
| 48 | GO:0006122: mitochondrial electron transport, ubiquinol to cytochrome c | 1.81E-03 |
| 49 | GO:0042255: ribosome assembly | 2.09E-03 |
| 50 | GO:0001558: regulation of cell growth | 2.39E-03 |
| 51 | GO:0008283: cell proliferation | 2.74E-03 |
| 52 | GO:0000387: spliceosomal snRNP assembly | 3.02E-03 |
| 53 | GO:0010162: seed dormancy process | 3.36E-03 |
| 54 | GO:0006378: mRNA polyadenylation | 3.71E-03 |
| 55 | GO:0012501: programmed cell death | 4.06E-03 |
| 56 | GO:0006820: anion transport | 4.06E-03 |
| 57 | GO:0006890: retrograde vesicle-mediated transport, Golgi to ER | 4.06E-03 |
| 58 | GO:0010229: inflorescence development | 4.43E-03 |
| 59 | GO:0019853: L-ascorbic acid biosynthetic process | 5.21E-03 |
| 60 | GO:0006487: protein N-linked glycosylation | 6.03E-03 |
| 61 | GO:0030150: protein import into mitochondrial matrix | 6.03E-03 |
| 62 | GO:0009944: polarity specification of adaxial/abaxial axis | 6.03E-03 |
| 63 | GO:0051302: regulation of cell division | 6.45E-03 |
| 64 | GO:0006334: nucleosome assembly | 6.89E-03 |
| 65 | GO:0061077: chaperone-mediated protein folding | 6.89E-03 |
| 66 | GO:0006730: one-carbon metabolic process | 7.34E-03 |
| 67 | GO:0009294: DNA mediated transformation | 7.79E-03 |
| 68 | GO:0010501: RNA secondary structure unwinding | 9.23E-03 |
| 69 | GO:0000413: protein peptidyl-prolyl isomerization | 9.23E-03 |
| 70 | GO:0006342: chromatin silencing | 9.73E-03 |
| 71 | GO:0015986: ATP synthesis coupled proton transport | 1.02E-02 |
| 72 | GO:0009791: post-embryonic development | 1.08E-02 |
| 73 | GO:0006457: protein folding | 1.40E-02 |
| 74 | GO:0009860: pollen tube growth | 1.51E-02 |
| 75 | GO:0006414: translational elongation | 1.67E-02 |
| 76 | GO:0016049: cell growth | 1.70E-02 |
| 77 | GO:0010311: lateral root formation | 1.83E-02 |
| 78 | GO:0006811: ion transport | 1.89E-02 |
| 79 | GO:0010043: response to zinc ion | 1.96E-02 |
| 80 | GO:0009631: cold acclimation | 1.96E-02 |
| 81 | GO:0048527: lateral root development | 1.96E-02 |
| 82 | GO:0000724: double-strand break repair via homologous recombination | 2.02E-02 |
| 83 | GO:0006839: mitochondrial transport | 2.29E-02 |
| 84 | GO:0009744: response to sucrose | 2.50E-02 |
| 85 | GO:0009408: response to heat | 2.56E-02 |
| 86 | GO:0042787: protein ubiquitination involved in ubiquitin-dependent protein catabolic process | 2.87E-02 |
| 87 | GO:0009846: pollen germination | 2.94E-02 |
| 88 | GO:0009809: lignin biosynthetic process | 3.09E-02 |
| 89 | GO:0010224: response to UV-B | 3.17E-02 |
| 90 | GO:0015031: protein transport | 3.31E-02 |
| 91 | GO:0006096: glycolytic process | 3.49E-02 |
| 92 | GO:0009409: response to cold | 3.58E-02 |
| 93 | GO:0009620: response to fungus | 3.73E-02 |
| 94 | GO:0000398: mRNA splicing, via spliceosome | 4.40E-02 |
| 95 | GO:0009845: seed germination | 4.93E-02 |
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0016018: cyclosporin A binding | 0.00E+00 |
| 2 | GO:0004615: phosphomannomutase activity | 0.00E+00 |
| 3 | GO:0001072: transcription antitermination factor activity, RNA binding | 0.00E+00 |
| 4 | GO:1990259: histone-glutamine methyltransferase activity | 0.00E+00 |
| 5 | GO:0003735: structural constituent of ribosome | 5.26E-63 |
| 6 | GO:0003729: mRNA binding | 6.89E-17 |
| 7 | GO:0005507: copper ion binding | 1.47E-07 |
| 8 | GO:0003723: RNA binding | 2.12E-06 |
| 9 | GO:0008649: rRNA methyltransferase activity | 2.51E-06 |
| 10 | GO:0003746: translation elongation factor activity | 1.05E-05 |
| 11 | GO:0030515: snoRNA binding | 5.34E-05 |
| 12 | GO:0015450: P-P-bond-hydrolysis-driven protein transmembrane transporter activity | 1.46E-04 |
| 13 | GO:0003743: translation initiation factor activity | 2.22E-04 |
| 14 | GO:0004634: phosphopyruvate hydratase activity | 2.65E-04 |
| 15 | GO:0004478: methionine adenosyltransferase activity | 4.38E-04 |
| 16 | GO:0070180: large ribosomal subunit rRNA binding | 4.38E-04 |
| 17 | GO:0004550: nucleoside diphosphate kinase activity | 6.29E-04 |
| 18 | GO:0051082: unfolded protein binding | 6.63E-04 |
| 19 | GO:0031369: translation initiation factor binding | 1.29E-03 |
| 20 | GO:0008235: metalloexopeptidase activity | 1.81E-03 |
| 21 | GO:0015288: porin activity | 2.09E-03 |
| 22 | GO:0043022: ribosome binding | 2.09E-03 |
| 23 | GO:0008308: voltage-gated anion channel activity | 2.39E-03 |
| 24 | GO:0001055: RNA polymerase II activity | 3.02E-03 |
| 25 | GO:0044183: protein binding involved in protein folding | 3.71E-03 |
| 26 | GO:0004129: cytochrome-c oxidase activity | 3.71E-03 |
| 27 | GO:0001054: RNA polymerase I activity | 3.71E-03 |
| 28 | GO:0001056: RNA polymerase III activity | 4.06E-03 |
| 29 | GO:0015114: phosphate ion transmembrane transporter activity | 4.43E-03 |
| 30 | GO:0015266: protein channel activity | 4.43E-03 |
| 31 | GO:0008266: poly(U) RNA binding | 4.81E-03 |
| 32 | GO:0008026: ATP-dependent helicase activity | 5.53E-03 |
| 33 | GO:0004407: histone deacetylase activity | 6.03E-03 |
| 34 | GO:0051087: chaperone binding | 6.45E-03 |
| 35 | GO:0008565: protein transporter activity | 7.80E-03 |
| 36 | GO:0046933: proton-transporting ATP synthase activity, rotational mechanism | 9.73E-03 |
| 37 | GO:0004004: ATP-dependent RNA helicase activity | 1.64E-02 |
| 38 | GO:0050897: cobalt ion binding | 1.96E-02 |
| 39 | GO:0003697: single-stranded DNA binding | 2.09E-02 |
| 40 | GO:0042393: histone binding | 2.29E-02 |
| 41 | GO:0005515: protein binding | 2.35E-02 |
| 42 | GO:0003924: GTPase activity | 2.56E-02 |
| 43 | GO:0005198: structural molecule activity | 2.72E-02 |
| 44 | GO:0003755: peptidyl-prolyl cis-trans isomerase activity | 2.79E-02 |
| 45 | GO:0003899: DNA-directed 5'-3' RNA polymerase activity | 3.09E-02 |
| 46 | GO:0003690: double-stranded DNA binding | 3.17E-02 |
| 47 | GO:0019843: rRNA binding | 4.67E-02 |
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0042719: mitochondrial intermembrane space protein transporter complex | 0.00E+00 |
| 2 | GO:0043186: P granule | 0.00E+00 |
| 3 | GO:0005840: ribosome | 8.74E-50 |
| 4 | GO:0022625: cytosolic large ribosomal subunit | 3.15E-48 |
| 5 | GO:0022626: cytosolic ribosome | 1.87E-40 |
| 6 | GO:0005730: nucleolus | 1.59E-32 |
| 7 | GO:0022627: cytosolic small ribosomal subunit | 2.57E-17 |
| 8 | GO:0005829: cytosol | 5.35E-16 |
| 9 | GO:0005774: vacuolar membrane | 5.47E-15 |
| 10 | GO:0009506: plasmodesma | 5.57E-15 |
| 11 | GO:0005737: cytoplasm | 1.73E-12 |
| 12 | GO:0015934: large ribosomal subunit | 7.77E-11 |
| 13 | GO:0005618: cell wall | 4.35E-07 |
| 14 | GO:0005773: vacuole | 1.94E-06 |
| 15 | GO:0005758: mitochondrial intermembrane space | 1.29E-05 |
| 16 | GO:0016020: membrane | 1.36E-05 |
| 17 | GO:0015935: small ribosomal subunit | 1.80E-05 |
| 18 | GO:0031428: box C/D snoRNP complex | 2.79E-05 |
| 19 | GO:0005742: mitochondrial outer membrane translocase complex | 8.78E-05 |
| 20 | GO:0005763: mitochondrial small ribosomal subunit | 1.08E-04 |
| 21 | GO:0071541: eukaryotic translation initiation factor 3 complex, eIF3m | 1.14E-04 |
| 22 | GO:0015030: Cajal body | 1.31E-04 |
| 23 | GO:0032040: small-subunit processome | 2.11E-04 |
| 24 | GO:0000015: phosphopyruvate hydratase complex | 2.65E-04 |
| 25 | GO:0005886: plasma membrane | 3.05E-04 |
| 26 | GO:0034719: SMN-Sm protein complex | 4.38E-04 |
| 27 | GO:0005741: mitochondrial outer membrane | 4.64E-04 |
| 28 | GO:0005747: mitochondrial respiratory chain complex I | 5.47E-04 |
| 29 | GO:0005849: mRNA cleavage factor complex | 6.29E-04 |
| 30 | GO:0005743: mitochondrial inner membrane | 7.93E-04 |
| 31 | GO:0000275: mitochondrial proton-transporting ATP synthase complex, catalytic core F(1) | 8.35E-04 |
| 32 | GO:0005682: U5 snRNP | 8.35E-04 |
| 33 | GO:0097526: spliceosomal tri-snRNP complex | 1.05E-03 |
| 34 | GO:0005746: mitochondrial respiratory chain | 1.05E-03 |
| 35 | GO:0005687: U4 snRNP | 1.05E-03 |
| 36 | GO:0005759: mitochondrial matrix | 1.16E-03 |
| 37 | GO:0005689: U12-type spliceosomal complex | 1.54E-03 |
| 38 | GO:0071004: U2-type prespliceosome | 2.09E-03 |
| 39 | GO:0005739: mitochondrion | 2.26E-03 |
| 40 | GO:0046930: pore complex | 2.39E-03 |
| 41 | GO:0005736: DNA-directed RNA polymerase I complex | 2.70E-03 |
| 42 | GO:0005685: U1 snRNP | 2.70E-03 |
| 43 | GO:0005666: DNA-directed RNA polymerase III complex | 3.02E-03 |
| 44 | GO:0071011: precatalytic spliceosome | 3.02E-03 |
| 45 | GO:0009507: chloroplast | 3.23E-03 |
| 46 | GO:0005740: mitochondrial envelope | 3.36E-03 |
| 47 | GO:0005686: U2 snRNP | 3.36E-03 |
| 48 | GO:0000418: DNA-directed RNA polymerase IV complex | 3.36E-03 |
| 49 | GO:0005852: eukaryotic translation initiation factor 3 complex | 3.71E-03 |
| 50 | GO:0071013: catalytic step 2 spliceosome | 3.71E-03 |
| 51 | GO:0005665: DNA-directed RNA polymerase II, core complex | 4.06E-03 |
| 52 | GO:0019013: viral nucleocapsid | 4.43E-03 |
| 53 | GO:0005753: mitochondrial proton-transporting ATP synthase complex | 5.21E-03 |
| 54 | GO:0070469: respiratory chain | 6.45E-03 |
| 55 | GO:0000790: nuclear chromatin | 8.74E-03 |
| 56 | GO:0016592: mediator complex | 1.18E-02 |
| 57 | GO:0030529: intracellular ribonucleoprotein complex | 1.46E-02 |
| 58 | GO:0000786: nucleosome | 2.02E-02 |
| 59 | GO:0005681: spliceosomal complex | 3.49E-02 |
| 60 | GO:0005732: small nucleolar ribonucleoprotein complex | 4.23E-02 |