Gene type: Transcription factor Metabolic gene Others DE type: Up Down Slightly_up Slightly_down Mixeded Others

GO Enrichment Analysis of Co-expressed Genes with

AT3G52870

GO-BP
GO-MF
GO-CC
RankGO TermAdjusted P value
1GO:0032194: ubiquinone biosynthetic process via 3,4-dihydroxy-5-polyprenylbenzoate0.00E+00
2GO:0070681: glutaminyl-tRNAGln biosynthesis via transamidation0.00E+00
3GO:0006223: uracil salvage0.00E+00
4GO:2000042: negative regulation of double-strand break repair via homologous recombination0.00E+00
5GO:0070272: proton-transporting ATP synthase complex biogenesis0.00E+00
6GO:0006399: tRNA metabolic process0.00E+00
7GO:0006412: translation3.33E-08
8GO:0042254: ribosome biogenesis2.36E-07
9GO:0032544: plastid translation2.43E-07
10GO:0010027: thylakoid membrane organization5.28E-06
11GO:0015995: chlorophyll biosynthetic process8.07E-06
12GO:0006633: fatty acid biosynthetic process5.08E-05
13GO:0006183: GTP biosynthetic process7.72E-05
14GO:0016123: xanthophyll biosynthetic process1.21E-04
15GO:0042372: phylloquinone biosynthetic process2.36E-04
16GO:1901259: chloroplast rRNA processing2.36E-04
17GO:0034337: RNA folding3.52E-04
18GO:0048363: mucilage pectin metabolic process3.52E-04
19GO:0071588: hydrogen peroxide mediated signaling pathway3.52E-04
20GO:0060627: regulation of vesicle-mediated transport3.52E-04
21GO:0006438: valyl-tRNA aminoacylation3.52E-04
22GO:0046520: sphingoid biosynthetic process3.52E-04
23GO:1904966: positive regulation of vitamin E biosynthetic process3.52E-04
24GO:0010442: guard cell morphogenesis3.52E-04
25GO:1904964: positive regulation of phytol biosynthetic process3.52E-04
26GO:0042371: vitamin K biosynthetic process3.52E-04
27GO:0043007: maintenance of rDNA3.52E-04
28GO:0000271: polysaccharide biosynthetic process3.63E-04
29GO:0009735: response to cytokinin4.70E-04
30GO:0006783: heme biosynthetic process5.65E-04
31GO:0010583: response to cyclopentenone5.74E-04
32GO:0032502: developmental process5.74E-04
33GO:2000123: positive regulation of stomatal complex development7.67E-04
34GO:0052541: plant-type cell wall cellulose metabolic process7.67E-04
35GO:0010115: regulation of abscisic acid biosynthetic process7.67E-04
36GO:1902326: positive regulation of chlorophyll biosynthetic process7.67E-04
37GO:0071668: plant-type cell wall assembly7.67E-04
38GO:0006782: protoporphyrinogen IX biosynthetic process7.77E-04
39GO:0009658: chloroplast organization9.15E-04
40GO:0006518: peptide metabolic process1.24E-03
41GO:0006617: SRP-dependent cotranslational protein targeting to membrane, signal sequence recognition1.24E-03
42GO:0015979: photosynthesis1.68E-03
43GO:0006241: CTP biosynthetic process1.79E-03
44GO:0010731: protein glutathionylation1.79E-03
45GO:0006424: glutamyl-tRNA aminoacylation1.79E-03
46GO:0046739: transport of virus in multicellular host1.79E-03
47GO:0006165: nucleoside diphosphate phosphorylation1.79E-03
48GO:0006228: UTP biosynthetic process1.79E-03
49GO:0050482: arachidonic acid secretion1.79E-03
50GO:0080158: chloroplast ribulose bisphosphate carboxylase complex biogenesis1.79E-03
51GO:2001141: regulation of RNA biosynthetic process1.79E-03
52GO:0019344: cysteine biosynthetic process1.80E-03
53GO:0007017: microtubule-based process1.98E-03
54GO:0042546: cell wall biogenesis2.29E-03
55GO:0015976: carbon utilization2.40E-03
56GO:0009765: photosynthesis, light harvesting2.40E-03
57GO:2000122: negative regulation of stomatal complex development2.40E-03
58GO:2000038: regulation of stomatal complex development2.40E-03
59GO:0000919: cell plate assembly2.40E-03
60GO:0006021: inositol biosynthetic process2.40E-03
61GO:0044206: UMP salvage2.40E-03
62GO:0010037: response to carbon dioxide2.40E-03
63GO:0071555: cell wall organization2.71E-03
64GO:0009306: protein secretion2.82E-03
65GO:0010375: stomatal complex patterning3.07E-03
66GO:0009247: glycolipid biosynthetic process3.07E-03
67GO:0032543: mitochondrial translation3.07E-03
68GO:0016120: carotene biosynthetic process3.07E-03
69GO:0043097: pyrimidine nucleoside salvage3.07E-03
70GO:0010236: plastoquinone biosynthetic process3.07E-03
71GO:0045038: protein import into chloroplast thylakoid membrane3.07E-03
72GO:0042335: cuticle development3.31E-03
73GO:0000413: protein peptidyl-prolyl isomerization3.31E-03
74GO:0045489: pectin biosynthetic process3.57E-03
75GO:0019288: isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway3.79E-03
76GO:0006655: phosphatidylglycerol biosynthetic process3.79E-03
77GO:0010190: cytochrome b6f complex assembly3.79E-03
78GO:0006206: pyrimidine nucleobase metabolic process3.79E-03
79GO:0032973: amino acid export3.79E-03
80GO:0009117: nucleotide metabolic process3.79E-03
81GO:0046855: inositol phosphate dephosphorylation3.79E-03
82GO:0009972: cytidine deamination3.79E-03
83GO:0006561: proline biosynthetic process3.79E-03
84GO:0009955: adaxial/abaxial pattern specification4.57E-03
85GO:0006694: steroid biosynthetic process4.57E-03
86GO:0048280: vesicle fusion with Golgi apparatus4.57E-03
87GO:0030488: tRNA methylation4.57E-03
88GO:0009854: oxidative photosynthetic carbon pathway4.57E-03
89GO:0010019: chloroplast-nucleus signaling pathway4.57E-03
90GO:0010555: response to mannitol4.57E-03
91GO:0007264: small GTPase mediated signal transduction4.70E-03
92GO:0098869: cellular oxidant detoxification5.40E-03
93GO:0009395: phospholipid catabolic process5.40E-03
94GO:0009772: photosynthetic electron transport in photosystem II5.40E-03
95GO:0043090: amino acid import5.40E-03
96GO:0006614: SRP-dependent cotranslational protein targeting to membrane5.40E-03
97GO:0071669: plant-type cell wall organization or biogenesis5.40E-03
98GO:0010444: guard mother cell differentiation5.40E-03
99GO:0006400: tRNA modification5.40E-03
100GO:0006644: phospholipid metabolic process6.27E-03
101GO:0009642: response to light intensity6.27E-03
102GO:0009690: cytokinin metabolic process6.27E-03
103GO:0006605: protein targeting6.27E-03
104GO:0042255: ribosome assembly6.27E-03
105GO:0019375: galactolipid biosynthetic process6.27E-03
106GO:0006353: DNA-templated transcription, termination6.27E-03
107GO:0055114: oxidation-reduction process6.97E-03
108GO:0009932: cell tip growth7.19E-03
109GO:0071482: cellular response to light stimulus7.19E-03
110GO:0010497: plasmodesmata-mediated intercellular transport7.19E-03
111GO:0017004: cytochrome complex assembly7.19E-03
112GO:0009808: lignin metabolic process7.19E-03
113GO:0010411: xyloglucan metabolic process7.51E-03
114GO:0080144: amino acid homeostasis8.16E-03
115GO:0048589: developmental growth8.16E-03
116GO:0006779: porphyrin-containing compound biosynthetic process9.17E-03
117GO:0048354: mucilage biosynthetic process involved in seed coat development9.17E-03
118GO:0009834: plant-type secondary cell wall biogenesis9.19E-03
119GO:0006896: Golgi to vacuole transport1.02E-02
120GO:0009870: defense response signaling pathway, resistance gene-dependent1.02E-02
121GO:0006535: cysteine biosynthetic process from serine1.02E-02
122GO:0009688: abscisic acid biosynthetic process1.02E-02
123GO:0043069: negative regulation of programmed cell death1.02E-02
124GO:0016051: carbohydrate biosynthetic process1.06E-02
125GO:0000038: very long-chain fatty acid metabolic process1.13E-02
126GO:0009073: aromatic amino acid family biosynthetic process1.13E-02
127GO:0006415: translational termination1.13E-02
128GO:0006352: DNA-templated transcription, initiation1.13E-02
129GO:0009750: response to fructose1.13E-02
130GO:0018119: peptidyl-cysteine S-nitrosylation1.13E-02
131GO:0007166: cell surface receptor signaling pathway1.19E-02
132GO:0006790: sulfur compound metabolic process1.25E-02
133GO:0016024: CDP-diacylglycerol biosynthetic process1.25E-02
134GO:0006631: fatty acid metabolic process1.26E-02
135GO:0030036: actin cytoskeleton organization1.37E-02
136GO:0050826: response to freezing1.37E-02
137GO:0010207: photosystem II assembly1.49E-02
138GO:0019853: L-ascorbic acid biosynthetic process1.61E-02
139GO:0046854: phosphatidylinositol phosphorylation1.61E-02
140GO:0009793: embryo development ending in seed dormancy1.64E-02
141GO:0042538: hyperosmotic salinity response1.72E-02
142GO:0006071: glycerol metabolic process1.74E-02
143GO:0006833: water transport1.74E-02
144GO:0009116: nucleoside metabolic process1.88E-02
145GO:0000027: ribosomal large subunit assembly1.88E-02
146GO:0007010: cytoskeleton organization1.88E-02
147GO:0006418: tRNA aminoacylation for protein translation2.01E-02
148GO:0010026: trichome differentiation2.01E-02
149GO:0061077: chaperone-mediated protein folding2.15E-02
150GO:0016226: iron-sulfur cluster assembly2.29E-02
151GO:0009414: response to water deprivation2.34E-02
152GO:0007169: transmembrane receptor protein tyrosine kinase signaling pathway2.40E-02
153GO:0009831: plant-type cell wall modification involved in multidimensional cell growth2.44E-02
154GO:0009411: response to UV2.44E-02
155GO:0016117: carotenoid biosynthetic process2.74E-02
156GO:0042147: retrograde transport, endosome to Golgi2.74E-02
157GO:0009742: brassinosteroid mediated signaling pathway2.79E-02
158GO:0045454: cell redox homeostasis2.88E-02
159GO:0080022: primary root development2.90E-02
160GO:0008033: tRNA processing2.90E-02
161GO:0034220: ion transmembrane transport2.90E-02
162GO:0010305: leaf vascular tissue pattern formation3.06E-02
163GO:0010182: sugar mediated signaling pathway3.06E-02
164GO:0006623: protein targeting to vacuole3.39E-02
165GO:0008654: phospholipid biosynthetic process3.39E-02
166GO:0000302: response to reactive oxygen species3.55E-02
167GO:0006891: intra-Golgi vesicle-mediated transport3.55E-02
168GO:0016132: brassinosteroid biosynthetic process3.55E-02
169GO:0016042: lipid catabolic process3.60E-02
170GO:0042744: hydrogen peroxide catabolic process3.75E-02
171GO:0009790: embryo development3.84E-02
172GO:0009567: double fertilization forming a zygote and endosperm4.07E-02
173GO:0009828: plant-type cell wall loosening4.07E-02
174GO:0007267: cell-cell signaling4.25E-02
175GO:0051607: defense response to virus4.43E-02
176GO:0000910: cytokinesis4.43E-02
177GO:0016126: sterol biosynthetic process4.62E-02
178GO:0009627: systemic acquired resistance4.99E-02
RankGO TermAdjusted P value
1GO:0005048: signal sequence binding0.00E+00
2GO:0050614: delta24-sterol reductase activity0.00E+00
3GO:0033728: divinyl chlorophyllide a 8-vinyl-reductase activity0.00E+00
4GO:0047450: crotonoyl-[acyl-carrier-protein] hydratase activity0.00E+00
5GO:0050567: glutaminyl-tRNA synthase (glutamine-hydrolyzing) activity0.00E+00
6GO:0008887: glycerate kinase activity0.00E+00
7GO:0010301: xanthoxin dehydrogenase activity0.00E+00
8GO:0050613: delta14-sterol reductase activity0.00E+00
9GO:0050518: 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase activity0.00E+00
10GO:0051744: 3,8-divinyl protochlorophyllide a 8-vinyl reductase activity0.00E+00
11GO:0046428: 1,4-dihydroxy-2-naphthoate octaprenyltransferase activity0.00E+00
12GO:0045435: lycopene epsilon cyclase activity0.00E+00
13GO:0008756: o-succinylbenzoate-CoA ligase activity0.00E+00
14GO:0019146: arabinose-5-phosphate isomerase activity0.00E+00
15GO:0019843: rRNA binding5.33E-13
16GO:0003735: structural constituent of ribosome5.87E-09
17GO:0003755: peptidyl-prolyl cis-trans isomerase activity3.52E-06
18GO:0019171: 3-hydroxyacyl-[acyl-carrier-protein] dehydratase activity5.59E-06
19GO:0016851: magnesium chelatase activity4.34E-05
20GO:0005200: structural constituent of cytoskeleton7.19E-05
21GO:0005528: FK506 binding1.54E-04
22GO:0051920: peroxiredoxin activity2.36E-04
23GO:0051753: mannan synthase activity2.36E-04
24GO:0000170: sphingosine hydroxylase activity3.52E-04
25GO:0030794: (S)-coclaurine-N-methyltransferase activity3.52E-04
26GO:0004560: alpha-L-fucosidase activity3.52E-04
27GO:0080132: fatty acid alpha-hydroxylase activity3.52E-04
28GO:0004655: porphobilinogen synthase activity3.52E-04
29GO:0009374: biotin binding3.52E-04
30GO:0004853: uroporphyrinogen decarboxylase activity3.52E-04
31GO:0004832: valine-tRNA ligase activity3.52E-04
32GO:0004328: formamidase activity3.52E-04
33GO:0010347: L-galactose-1-phosphate phosphatase activity3.52E-04
34GO:0016209: antioxidant activity3.84E-04
35GO:0016722: oxidoreductase activity, oxidizing metal ions7.28E-04
36GO:0003938: IMP dehydrogenase activity7.67E-04
37GO:0046509: 1,2-diacylglycerol 3-beta-galactosyltransferase activity7.67E-04
38GO:0052832: inositol monophosphate 3-phosphatase activity7.67E-04
39GO:0042284: sphingolipid delta-4 desaturase activity7.67E-04
40GO:0008934: inositol monophosphate 1-phosphatase activity7.67E-04
41GO:0052833: inositol monophosphate 4-phosphatase activity7.67E-04
42GO:0016788: hydrolase activity, acting on ester bonds9.46E-04
43GO:0005504: fatty acid binding1.24E-03
44GO:0004148: dihydrolipoyl dehydrogenase activity1.24E-03
45GO:0045174: glutathione dehydrogenase (ascorbate) activity1.24E-03
46GO:0052689: carboxylic ester hydrolase activity1.59E-03
47GO:0102336: 3-oxo-arachidoyl-CoA synthase activity1.62E-03
48GO:0102337: 3-oxo-cerotoyl-CoA synthase activity1.62E-03
49GO:0102338: 3-oxo-lignoceronyl-CoA synthase activity1.62E-03
50GO:0004742: dihydrolipoyllysine-residue acetyltransferase activity1.79E-03
51GO:0035529: NADH pyrophosphatase activity1.79E-03
52GO:0035250: UDP-galactosyltransferase activity1.79E-03
53GO:0016149: translation release factor activity, codon specific1.79E-03
54GO:0016811: hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in linear amides1.79E-03
55GO:0016628: oxidoreductase activity, acting on the CH-CH group of donors, NAD or NADP as acceptor1.79E-03
56GO:0004550: nucleoside diphosphate kinase activity1.79E-03
57GO:0008097: 5S rRNA binding1.79E-03
58GO:0051536: iron-sulfur cluster binding1.80E-03
59GO:0047262: polygalacturonate 4-alpha-galacturonosyltransferase activity2.38E-03
60GO:0001053: plastid sigma factor activity2.40E-03
61GO:0004845: uracil phosphoribosyltransferase activity2.40E-03
62GO:0016836: hydro-lyase activity2.40E-03
63GO:0004045: aminoacyl-tRNA hydrolase activity2.40E-03
64GO:0016987: sigma factor activity2.40E-03
65GO:0045430: chalcone isomerase activity2.40E-03
66GO:0046527: glucosyltransferase activity2.40E-03
67GO:0052793: pectin acetylesterase activity2.40E-03
68GO:0043495: protein anchor2.40E-03
69GO:0004659: prenyltransferase activity2.40E-03
70GO:0003924: GTPase activity2.65E-03
71GO:0004623: phospholipase A2 activity3.07E-03
72GO:0004040: amidase activity3.07E-03
73GO:0003989: acetyl-CoA carboxylase activity3.07E-03
74GO:0004605: phosphatidate cytidylyltransferase activity3.79E-03
75GO:0004130: cytochrome-c peroxidase activity3.79E-03
76GO:0016208: AMP binding3.79E-03
77GO:0016462: pyrophosphatase activity3.79E-03
78GO:0016688: L-ascorbate peroxidase activity3.79E-03
79GO:0016762: xyloglucan:xyloglucosyl transferase activity4.40E-03
80GO:0004124: cysteine synthase activity4.57E-03
81GO:0004126: cytidine deaminase activity4.57E-03
82GO:0008441: 3'(2'),5'-bisphosphate nucleotidase activity4.57E-03
83GO:0004849: uridine kinase activity4.57E-03
84GO:0016491: oxidoreductase activity4.93E-03
85GO:0019899: enzyme binding5.40E-03
86GO:0005525: GTP binding5.53E-03
87GO:0008312: 7S RNA binding6.27E-03
88GO:0004033: aldo-keto reductase (NADP) activity6.27E-03
89GO:0016798: hydrolase activity, acting on glycosyl bonds7.51E-03
90GO:0008889: glycerophosphodiester phosphodiesterase activity8.16E-03
91GO:0003747: translation release factor activity8.16E-03
92GO:0015450: P-P-bond-hydrolysis-driven protein transmembrane transporter activity8.33E-03
93GO:0004675: transmembrane receptor protein serine/threonine kinase activity9.19E-03
94GO:0003993: acid phosphatase activity1.11E-02
95GO:0004022: alcohol dehydrogenase (NAD) activity1.37E-02
96GO:0004089: carbonate dehydratase activity1.37E-02
97GO:0004601: peroxidase activity1.75E-02
98GO:0004857: enzyme inhibitor activity1.88E-02
99GO:0008324: cation transmembrane transporter activity2.01E-02
100GO:0022891: substrate-specific transmembrane transporter activity2.44E-02
101GO:0016760: cellulose synthase (UDP-forming) activity2.44E-02
102GO:0008514: organic anion transmembrane transporter activity2.59E-02
103GO:0003727: single-stranded RNA binding2.59E-02
104GO:0004812: aminoacyl-tRNA ligase activity2.74E-02
105GO:0008080: N-acetyltransferase activity3.06E-02
106GO:0003713: transcription coactivator activity3.06E-02
107GO:0016758: transferase activity, transferring hexosyl groups3.21E-02
108GO:0010181: FMN binding3.22E-02
109GO:0016740: transferase activity3.24E-02
110GO:0019901: protein kinase binding3.39E-02
111GO:0000156: phosphorelay response regulator activity3.90E-02
112GO:0005507: copper ion binding4.05E-02
113GO:0016597: amino acid binding4.43E-02
114GO:0015250: water channel activity4.62E-02
115GO:0016168: chlorophyll binding4.80E-02
RankGO TermAdjusted P value
1GO:0030956: glutamyl-tRNA(Gln) amidotransferase complex0.00E+00
2GO:0009570: chloroplast stroma5.14E-32
3GO:0009507: chloroplast1.88E-30
4GO:0009941: chloroplast envelope1.21E-24
5GO:0005840: ribosome4.87E-11
6GO:0009535: chloroplast thylakoid membrane2.38E-10
7GO:0009579: thylakoid1.08E-09
8GO:0031977: thylakoid lumen2.71E-09
9GO:0009543: chloroplast thylakoid lumen7.46E-09
10GO:0046658: anchored component of plasma membrane1.10E-07
11GO:0031225: anchored component of membrane4.73E-07
12GO:0009534: chloroplast thylakoid1.06E-06
13GO:0010007: magnesium chelatase complex1.97E-05
14GO:0009505: plant-type cell wall3.04E-05
15GO:0005618: cell wall2.06E-04
16GO:0048046: apoplast4.38E-04
17GO:0009536: plastid4.50E-04
18GO:0045298: tubulin complex5.65E-04
19GO:0080085: signal recognition particle, chloroplast targeting7.67E-04
20GO:0000311: plastid large ribosomal subunit1.02E-03
21GO:0009509: chromoplast1.24E-03
22GO:0009317: acetyl-CoA carboxylase complex1.24E-03
23GO:0005576: extracellular region1.41E-03
24GO:0042651: thylakoid membrane1.98E-03
25GO:0009533: chloroplast stromal thylakoid5.40E-03
26GO:0031969: chloroplast membrane5.66E-03
27GO:0009295: nucleoid5.67E-03
28GO:0016020: membrane5.88E-03
29GO:0012507: ER to Golgi transport vesicle membrane6.27E-03
30GO:0022626: cytosolic ribosome6.70E-03
31GO:0005786: signal recognition particle, endoplasmic reticulum targeting7.19E-03
32GO:0005763: mitochondrial small ribosomal subunit8.16E-03
33GO:0015934: large ribosomal subunit9.64E-03
34GO:0032040: small-subunit processome1.25E-02
35GO:0009508: plastid chromosome1.37E-02
36GO:0005856: cytoskeleton1.54E-02
37GO:0030176: integral component of endoplasmic reticulum membrane1.61E-02
38GO:0009654: photosystem II oxygen evolving complex2.01E-02
39GO:0005886: plasma membrane2.14E-02
40GO:0015935: small ribosomal subunit2.15E-02
41GO:0009506: plasmodesma2.23E-02
42GO:0031410: cytoplasmic vesicle2.29E-02
43GO:0022625: cytosolic large ribosomal subunit2.45E-02
44GO:0009504: cell plate3.39E-02
45GO:0009523: photosystem II3.39E-02
46GO:0019898: extrinsic component of membrane3.39E-02
47GO:0000139: Golgi membrane4.03E-02
48GO:0005773: vacuole4.10E-02
49GO:0005778: peroxisomal membrane4.25E-02
50GO:0030529: intracellular ribonucleoprotein complex4.62E-02
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Gene type



Gene DE type