Gene type: Transcription factor Metabolic gene Others DE type: Up Down Slightly_up Slightly_down Mixeded Others

GO Enrichment Analysis of Co-expressed Genes with

AT3G52400

GO-BP
GO-MF
GO-CC
RankGO TermAdjusted P value
1GO:0072660: maintenance of protein location in plasma membrane0.00E+00
2GO:0071327: cellular response to trehalose stimulus0.00E+00
3GO:0043048: dolichyl monophosphate biosynthetic process0.00E+00
4GO:0042891: antibiotic transport0.00E+00
5GO:0017186: peptidyl-pyroglutamic acid biosynthetic process, using glutaminyl-peptide cyclotransferase0.00E+00
6GO:0070212: protein poly-ADP-ribosylation0.00E+00
7GO:0045792: negative regulation of cell size0.00E+00
8GO:1900367: positive regulation of defense response to insect0.00E+00
9GO:0010200: response to chitin1.16E-15
10GO:0009617: response to bacterium9.10E-12
11GO:0009816: defense response to bacterium, incompatible interaction1.62E-10
12GO:0006952: defense response1.20E-09
13GO:0042742: defense response to bacterium2.69E-09
14GO:0006468: protein phosphorylation2.23E-08
15GO:0009626: plant-type hypersensitive response3.04E-08
16GO:0080142: regulation of salicylic acid biosynthetic process6.17E-07
17GO:0060548: negative regulation of cell death6.17E-07
18GO:0010942: positive regulation of cell death2.68E-06
19GO:0031349: positive regulation of defense response5.37E-06
20GO:0010618: aerenchyma formation5.37E-06
21GO:0006979: response to oxidative stress1.04E-05
22GO:0048281: inflorescence morphogenesis1.89E-05
23GO:0048194: Golgi vesicle budding4.18E-05
24GO:0009737: response to abscisic acid5.30E-05
25GO:0050832: defense response to fungus5.52E-05
26GO:0000266: mitochondrial fission6.09E-05
27GO:0009627: systemic acquired resistance1.03E-04
28GO:0009759: indole glucosinolate biosynthetic process1.68E-04
29GO:0031348: negative regulation of defense response2.22E-04
30GO:0010310: regulation of hydrogen peroxide metabolic process2.28E-04
31GO:0009612: response to mechanical stimulus2.28E-04
32GO:0009625: response to insect2.50E-04
33GO:0010044: response to aluminum ion2.96E-04
34GO:0070370: cellular heat acclimation2.96E-04
35GO:0051707: response to other organism3.16E-04
36GO:0009700: indole phytoalexin biosynthetic process3.44E-04
37GO:0060862: negative regulation of floral organ abscission3.44E-04
38GO:0006643: membrane lipid metabolic process3.44E-04
39GO:0051245: negative regulation of cellular defense response3.44E-04
40GO:0010941: regulation of cell death3.44E-04
41GO:0009609: response to symbiotic bacterium3.44E-04
42GO:1901183: positive regulation of camalexin biosynthetic process3.44E-04
43GO:0009270: response to humidity3.44E-04
44GO:0016559: peroxisome fission3.72E-04
45GO:0043562: cellular response to nitrogen levels4.56E-04
46GO:2000031: regulation of salicylic acid mediated signaling pathway4.56E-04
47GO:0010120: camalexin biosynthetic process4.56E-04
48GO:0006623: protein targeting to vacuole4.63E-04
49GO:0010112: regulation of systemic acquired resistance5.47E-04
50GO:0051865: protein autoubiquitination5.47E-04
51GO:0009751: response to salicylic acid6.05E-04
52GO:0009862: systemic acquired resistance, salicylic acid mediated signaling pathway6.45E-04
53GO:0019725: cellular homeostasis7.51E-04
54GO:0051252: regulation of RNA metabolic process7.51E-04
55GO:0002221: pattern recognition receptor signaling pathway7.51E-04
56GO:0046740: transport of virus in host, cell to cell7.51E-04
57GO:0080183: response to photooxidative stress7.51E-04
58GO:0015914: phospholipid transport7.51E-04
59GO:0080151: positive regulation of salicylic acid mediated signaling pathway7.51E-04
60GO:0080185: effector dependent induction by symbiont of host immune response7.51E-04
61GO:0019483: beta-alanine biosynthetic process7.51E-04
62GO:0015865: purine nucleotide transport7.51E-04
63GO:0006212: uracil catabolic process7.51E-04
64GO:0010541: acropetal auxin transport7.51E-04
65GO:0043069: negative regulation of programmed cell death7.52E-04
66GO:0052544: defense response by callose deposition in cell wall8.68E-04
67GO:0009682: induced systemic resistance8.68E-04
68GO:0010105: negative regulation of ethylene-activated signaling pathway9.90E-04
69GO:0012501: programmed cell death9.90E-04
70GO:0009723: response to ethylene1.11E-03
71GO:0010581: regulation of starch biosynthetic process1.21E-03
72GO:0007188: adenylate cyclase-modulating G-protein coupled receptor signaling pathway1.21E-03
73GO:0071492: cellular response to UV-A1.21E-03
74GO:0055074: calcium ion homeostasis1.21E-03
75GO:0045793: positive regulation of cell size1.21E-03
76GO:0072661: protein targeting to plasma membrane1.21E-03
77GO:0010186: positive regulation of cellular defense response1.21E-03
78GO:1900140: regulation of seedling development1.21E-03
79GO:0010359: regulation of anion channel activity1.21E-03
80GO:0061158: 3'-UTR-mediated mRNA destabilization1.21E-03
81GO:0034605: cellular response to heat1.26E-03
82GO:0002237: response to molecule of bacterial origin1.26E-03
83GO:0010119: regulation of stomatal movement1.35E-03
84GO:0070588: calcium ion transmembrane transport1.41E-03
85GO:0009969: xyloglucan biosynthetic process1.41E-03
86GO:0010167: response to nitrate1.41E-03
87GO:0000162: tryptophan biosynthetic process1.57E-03
88GO:0009863: salicylic acid mediated signaling pathway1.74E-03
89GO:0010148: transpiration1.75E-03
90GO:0002679: respiratory burst involved in defense response1.75E-03
91GO:0010071: root meristem specification1.75E-03
92GO:0034219: carbohydrate transmembrane transport1.75E-03
93GO:0070301: cellular response to hydrogen peroxide1.75E-03
94GO:0006612: protein targeting to membrane1.75E-03
95GO:0043207: response to external biotic stimulus1.75E-03
96GO:0046902: regulation of mitochondrial membrane permeability1.75E-03
97GO:0009399: nitrogen fixation1.75E-03
98GO:0010150: leaf senescence1.99E-03
99GO:0009651: response to salt stress2.17E-03
100GO:0071456: cellular response to hypoxia2.31E-03
101GO:0009814: defense response, incompatible interaction2.31E-03
102GO:2000022: regulation of jasmonic acid mediated signaling pathway2.31E-03
103GO:0010188: response to microbial phytotoxin2.35E-03
104GO:0010508: positive regulation of autophagy2.35E-03
105GO:0006542: glutamine biosynthetic process2.35E-03
106GO:0071486: cellular response to high light intensity2.35E-03
107GO:0010483: pollen tube reception2.35E-03
108GO:0048830: adventitious root development2.35E-03
109GO:0009765: photosynthesis, light harvesting2.35E-03
110GO:0010363: regulation of plant-type hypersensitive response2.35E-03
111GO:0010600: regulation of auxin biosynthetic process2.35E-03
112GO:0043161: proteasome-mediated ubiquitin-dependent protein catabolic process2.36E-03
113GO:0007166: cell surface receptor signaling pathway2.44E-03
114GO:0031347: regulation of defense response2.67E-03
115GO:0046283: anthocyanin-containing compound metabolic process3.00E-03
116GO:0010225: response to UV-C3.00E-03
117GO:0000304: response to singlet oxygen3.00E-03
118GO:0009697: salicylic acid biosynthetic process3.00E-03
119GO:0046323: glucose import3.45E-03
120GO:0002238: response to molecule of fungal origin3.71E-03
121GO:0061025: membrane fusion3.71E-03
122GO:0070814: hydrogen sulfide biosynthetic process3.71E-03
123GO:1902456: regulation of stomatal opening3.71E-03
124GO:1900425: negative regulation of defense response to bacterium3.71E-03
125GO:0010193: response to ozone4.26E-03
126GO:0000302: response to reactive oxygen species4.26E-03
127GO:0010555: response to mannitol4.47E-03
128GO:2000067: regulation of root morphogenesis4.47E-03
129GO:0052033: pathogen-associated molecular pattern dependent induction by symbiont of host innate immune response4.47E-03
130GO:0000911: cytokinesis by cell plate formation4.47E-03
131GO:0009409: response to cold4.87E-03
132GO:0009864: induced systemic resistance, jasmonic acid mediated signaling pathway5.27E-03
133GO:0009610: response to symbiotic fungus5.27E-03
134GO:0046470: phosphatidylcholine metabolic process5.27E-03
135GO:0043090: amino acid import5.27E-03
136GO:0071446: cellular response to salicylic acid stimulus5.27E-03
137GO:0007169: transmembrane receptor protein tyrosine kinase signaling pathway5.67E-03
138GO:0016192: vesicle-mediated transport5.81E-03
139GO:0051607: defense response to virus5.82E-03
140GO:0010078: maintenance of root meristem identity6.13E-03
141GO:0030162: regulation of proteolysis6.13E-03
142GO:1900150: regulation of defense response to fungus6.13E-03
143GO:0010492: maintenance of shoot apical meristem identity6.13E-03
144GO:0030091: protein repair6.13E-03
145GO:0043068: positive regulation of programmed cell death6.13E-03
146GO:0009787: regulation of abscisic acid-activated signaling pathway6.13E-03
147GO:0009819: drought recovery6.13E-03
148GO:0001666: response to hypoxia6.16E-03
149GO:0042128: nitrate assimilation6.89E-03
150GO:0010204: defense response signaling pathway, resistance gene-independent7.03E-03
151GO:0010497: plasmodesmata-mediated intercellular transport7.03E-03
152GO:0009699: phenylpropanoid biosynthetic process7.03E-03
153GO:0006075: (1->3)-beta-D-glucan biosynthetic process7.03E-03
154GO:0007186: G-protein coupled receptor signaling pathway7.03E-03
155GO:0009611: response to wounding7.10E-03
156GO:0006886: intracellular protein transport7.42E-03
157GO:0009414: response to water deprivation7.43E-03
158GO:0009835: fruit ripening7.97E-03
159GO:0008219: cell death8.05E-03
160GO:0009817: defense response to fungus, incompatible interaction8.05E-03
161GO:0010311: lateral root formation8.47E-03
162GO:0009407: toxin catabolic process8.89E-03
163GO:1900426: positive regulation of defense response to bacterium8.96E-03
164GO:2000280: regulation of root development8.96E-03
165GO:0048527: lateral root development9.32E-03
166GO:0006629: lipid metabolic process9.73E-03
167GO:0006995: cellular response to nitrogen starvation1.00E-02
168GO:0009641: shade avoidance1.00E-02
169GO:0010215: cellulose microfibril organization1.00E-02
170GO:0009870: defense response signaling pathway, resistance gene-dependent1.00E-02
171GO:0000103: sulfate assimilation1.00E-02
172GO:0006032: chitin catabolic process1.00E-02
173GO:0009750: response to fructose1.11E-02
174GO:0030148: sphingolipid biosynthetic process1.11E-02
175GO:0009684: indoleacetic acid biosynthetic process1.11E-02
176GO:0002213: defense response to insect1.22E-02
177GO:0071365: cellular response to auxin stimulus1.22E-02
178GO:0006887: exocytosis1.22E-02
179GO:0015706: nitrate transport1.22E-02
180GO:0015031: protein transport1.24E-02
181GO:0042542: response to hydrogen peroxide1.27E-02
182GO:0006807: nitrogen compound metabolic process1.33E-02
183GO:0009266: response to temperature stimulus1.45E-02
184GO:0007034: vacuolar transport1.45E-02
185GO:0009636: response to toxic substance1.49E-02
186GO:0010053: root epidermal cell differentiation1.58E-02
187GO:0006486: protein glycosylation1.79E-02
188GO:0006970: response to osmotic stress1.85E-02
189GO:0006874: cellular calcium ion homeostasis1.96E-02
190GO:0016998: cell wall macromolecule catabolic process2.10E-02
191GO:0048278: vesicle docking2.10E-02
192GO:0035428: hexose transmembrane transport2.24E-02
193GO:0007005: mitochondrion organization2.24E-02
194GO:0009620: response to fungus2.32E-02
195GO:0009411: response to UV2.38E-02
196GO:0001944: vasculature development2.38E-02
197GO:0009693: ethylene biosynthetic process2.38E-02
198GO:0046777: protein autophosphorylation2.40E-02
199GO:0044550: secondary metabolite biosynthetic process2.45E-02
200GO:0010091: trichome branching2.53E-02
201GO:0018105: peptidyl-serine phosphorylation2.62E-02
202GO:0009789: positive regulation of abscisic acid-activated signaling pathway2.68E-02
203GO:0009742: brassinosteroid mediated signaling pathway2.70E-02
204GO:0080022: primary root development2.83E-02
205GO:0000413: protein peptidyl-prolyl isomerization2.83E-02
206GO:0006662: glycerol ether metabolic process2.99E-02
207GO:0010197: polar nucleus fusion2.99E-02
208GO:0008360: regulation of cell shape2.99E-02
209GO:0048544: recognition of pollen3.15E-02
210GO:0007165: signal transduction3.15E-02
211GO:0008654: phospholipid biosynthetic process3.31E-02
212GO:0009851: auxin biosynthetic process3.31E-02
213GO:0010183: pollen tube guidance3.31E-02
214GO:0009749: response to glucose3.31E-02
215GO:0009845: seed germination3.45E-02
216GO:0006891: intra-Golgi vesicle-mediated transport3.47E-02
217GO:0016032: viral process3.64E-02
218GO:0071281: cellular response to iron ion3.81E-02
219GO:0030163: protein catabolic process3.81E-02
220GO:0009753: response to jasmonic acid3.91E-02
221GO:0006904: vesicle docking involved in exocytosis4.15E-02
222GO:0040008: regulation of growth4.19E-02
223GO:0046686: response to cadmium ion4.79E-02
224GO:0006906: vesicle fusion4.87E-02
225GO:0009873: ethylene-activated signaling pathway4.90E-02
226GO:0006470: protein dephosphorylation5.00E-02
RankGO TermAdjusted P value
1GO:0015148: D-xylose transmembrane transporter activity0.00E+00
2GO:0010298: dihydrocamalexic acid decarboxylase activity0.00E+00
3GO:0015575: mannitol transmembrane transporter activity0.00E+00
4GO:0016603: glutaminyl-peptide cyclotransferase activity0.00E+00
5GO:0005365: myo-inositol transmembrane transporter activity0.00E+00
6GO:0004168: dolichol kinase activity0.00E+00
7GO:0015576: sorbitol transmembrane transporter activity0.00E+00
8GO:0015370: solute:sodium symporter activity0.00E+00
9GO:0050269: coniferyl-aldehyde dehydrogenase activity0.00E+00
10GO:0003837: beta-ureidopropionase activity0.00E+00
11GO:0015591: D-ribose transmembrane transporter activity0.00E+00
12GO:0016301: kinase activity2.06E-07
13GO:0005524: ATP binding2.76E-07
14GO:0004012: phospholipid-translocating ATPase activity4.63E-06
15GO:0004674: protein serine/threonine kinase activity1.08E-05
16GO:0005516: calmodulin binding1.73E-05
17GO:0004713: protein tyrosine kinase activity3.84E-05
18GO:0015662: ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism7.45E-05
19GO:0005515: protein binding1.86E-04
20GO:0015168: glycerol transmembrane transporter activity3.44E-04
21GO:2001147: camalexin binding3.44E-04
22GO:0031127: alpha-(1,2)-fucosyltransferase activity3.44E-04
23GO:2001227: quercitrin binding3.44E-04
24GO:1901149: salicylic acid binding3.44E-04
25GO:0080042: ADP-glucose pyrophosphohydrolase activity3.44E-04
26GO:0004714: transmembrane receptor protein tyrosine kinase activity3.72E-04
27GO:0005509: calcium ion binding6.54E-04
28GO:0047443: 4-hydroxy-4-methyl-2-oxoglutarate aldolase activity7.51E-04
29GO:0080041: ADP-ribose pyrophosphohydrolase activity7.51E-04
30GO:0008428: ribonuclease inhibitor activity7.51E-04
31GO:0045140: inositol phosphoceramide synthase activity7.51E-04
32GO:0017110: nucleoside-diphosphatase activity7.51E-04
33GO:0004683: calmodulin-dependent protein kinase activity9.90E-04
34GO:0004806: triglyceride lipase activity9.90E-04
35GO:0005388: calcium-transporting ATPase activity1.12E-03
36GO:0004781: sulfate adenylyltransferase (ATP) activity1.21E-03
37GO:0031683: G-protein beta/gamma-subunit complex binding1.21E-03
38GO:0016595: glutamate binding1.21E-03
39GO:0004049: anthranilate synthase activity1.21E-03
40GO:0001664: G-protein coupled receptor binding1.21E-03
41GO:0003955: NAD(P)H dehydrogenase (quinone) activity1.21E-03
42GO:0004190: aspartic-type endopeptidase activity1.41E-03
43GO:0005354: galactose transmembrane transporter activity1.75E-03
44GO:0004675: transmembrane receptor protein serine/threonine kinase activity1.79E-03
45GO:0016709: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, NAD(P)H as one donor, and incorporation of one atom of oxygen1.98E-03
46GO:0004364: glutathione transferase activity1.99E-03
47GO:0033612: receptor serine/threonine kinase binding2.11E-03
48GO:0043495: protein anchor2.35E-03
49GO:0015204: urea transmembrane transporter activity2.35E-03
50GO:0016655: oxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor2.35E-03
51GO:0008948: oxaloacetate decarboxylase activity3.00E-03
52GO:0005546: phosphatidylinositol-4,5-bisphosphate binding3.00E-03
53GO:0047631: ADP-ribose diphosphatase activity3.00E-03
54GO:0005471: ATP:ADP antiporter activity3.00E-03
55GO:0004356: glutamate-ammonia ligase activity3.00E-03
56GO:0015145: monosaccharide transmembrane transporter activity3.00E-03
57GO:0004605: phosphatidate cytidylyltransferase activity3.71E-03
58GO:0005355: glucose transmembrane transporter activity3.71E-03
59GO:0000210: NAD+ diphosphatase activity3.71E-03
60GO:0004029: aldehyde dehydrogenase (NAD) activity3.71E-03
61GO:0102391: decanoate--CoA ligase activity4.47E-03
62GO:0033743: peptide-methionine (R)-S-oxide reductase activity4.47E-03
63GO:0008320: protein transmembrane transporter activity5.27E-03
64GO:0043295: glutathione binding5.27E-03
65GO:0004467: long-chain fatty acid-CoA ligase activity5.27E-03
66GO:0008107: galactoside 2-alpha-L-fucosyltransferase activity5.27E-03
67GO:0004672: protein kinase activity5.81E-03
68GO:0005544: calcium-dependent phospholipid binding6.13E-03
69GO:0016847: 1-aminocyclopropane-1-carboxylate synthase activity6.13E-03
70GO:0009931: calcium-dependent protein serine/threonine kinase activity6.89E-03
71GO:0003843: 1,3-beta-D-glucan synthase activity7.03E-03
72GO:0004630: phospholipase D activity7.03E-03
73GO:0070290: N-acylphosphatidylethanolamine-specific phospholipase D activity7.03E-03
74GO:0042803: protein homodimerization activity7.60E-03
75GO:0004871: signal transducer activity7.60E-03
76GO:0008417: fucosyltransferase activity7.97E-03
77GO:0015112: nitrate transmembrane transporter activity8.96E-03
78GO:0004028: 3-chloroallyl aldehyde dehydrogenase activity8.96E-03
79GO:0004568: chitinase activity1.00E-02
80GO:0047372: acylglycerol lipase activity1.11E-02
81GO:0005543: phospholipid binding1.11E-02
82GO:0019825: oxygen binding1.26E-02
83GO:0005484: SNAP receptor activity1.32E-02
84GO:0005262: calcium channel activity1.33E-02
85GO:0004842: ubiquitin-protein transferase activity1.46E-02
86GO:0015293: symporter activity1.49E-02
87GO:0004970: ionotropic glutamate receptor activity1.58E-02
88GO:0043565: sequence-specific DNA binding1.58E-02
89GO:0051119: sugar transmembrane transporter activity1.58E-02
90GO:0005217: intracellular ligand-gated ion channel activity1.58E-02
91GO:0003712: transcription cofactor activity1.58E-02
92GO:0000287: magnesium ion binding1.64E-02
93GO:0003954: NADH dehydrogenase activity1.83E-02
94GO:0016298: lipase activity1.85E-02
95GO:0016887: ATPase activity1.88E-02
96GO:0043424: protein histidine kinase binding1.96E-02
97GO:0031625: ubiquitin protein ligase binding1.98E-02
98GO:0005506: iron ion binding2.24E-02
99GO:0061630: ubiquitin protein ligase activity2.35E-02
100GO:0003727: single-stranded RNA binding2.53E-02
101GO:0015035: protein disulfide oxidoreductase activity2.62E-02
102GO:0047134: protein-disulfide reductase activity2.68E-02
103GO:0008080: N-acetyltransferase activity2.99E-02
104GO:0001085: RNA polymerase II transcription factor binding2.99E-02
105GO:0010181: FMN binding3.15E-02
106GO:0004791: thioredoxin-disulfide reductase activity3.15E-02
107GO:0046872: metal ion binding3.77E-02
108GO:0016671: oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor3.81E-02
109GO:0015144: carbohydrate transmembrane transporter activity3.81E-02
110GO:0005351: sugar:proton symporter activity4.29E-02
111GO:0016597: amino acid binding4.33E-02
112GO:0051213: dioxygenase activity4.51E-02
113GO:0016168: chlorophyll binding4.69E-02
114GO:0020037: heme binding4.89E-02
RankGO TermAdjusted P value
1GO:0005886: plasma membrane3.97E-22
2GO:0016021: integral component of membrane2.37E-10
3GO:0005741: mitochondrial outer membrane1.95E-04
4GO:0005783: endoplasmic reticulum2.08E-04
5GO:0009504: cell plate4.63E-04
6GO:0009506: plasmodesma4.66E-04
7GO:0005950: anthranilate synthase complex7.51E-04
8GO:0005901: caveola7.51E-04
9GO:0031304: intrinsic component of mitochondrial inner membrane7.51E-04
10GO:0017119: Golgi transport complex7.52E-04
11GO:0016020: membrane8.01E-04
12GO:0030658: transport vesicle membrane1.75E-03
13GO:0070062: extracellular exosome1.75E-03
14GO:0005775: vacuolar lumen1.75E-03
15GO:0031902: late endosome membrane1.89E-03
16GO:0005789: endoplasmic reticulum membrane2.18E-03
17GO:0032586: protein storage vacuole membrane2.35E-03
18GO:0000164: protein phosphatase type 1 complex3.00E-03
19GO:0005887: integral component of plasma membrane4.28E-03
20GO:0005802: trans-Golgi network4.92E-03
21GO:0032580: Golgi cisterna membrane5.17E-03
22GO:0033116: endoplasmic reticulum-Golgi intermediate compartment membrane5.27E-03
23GO:0005778: peroxisomal membrane5.49E-03
24GO:0000148: 1,3-beta-D-glucan synthase complex7.03E-03
25GO:0000326: protein storage vacuole7.03E-03
26GO:0016604: nuclear body8.96E-03
27GO:0030665: clathrin-coated vesicle membrane8.96E-03
28GO:0005740: mitochondrial envelope1.00E-02
29GO:0005794: Golgi apparatus1.30E-02
30GO:0031012: extracellular matrix1.33E-02
31GO:0005795: Golgi stack1.58E-02
32GO:0030176: integral component of endoplasmic reticulum membrane1.58E-02
33GO:0005773: vacuole1.73E-02
34GO:0005737: cytoplasm3.23E-02
35GO:0009523: photosystem II3.31E-02
36GO:0005774: vacuolar membrane3.50E-02
37GO:0000145: exocyst3.64E-02
38GO:0005788: endoplasmic reticulum lumen4.69E-02
39GO:0005667: transcription factor complex4.87E-02
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Gene type



Gene DE type