co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT3G51820

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0032194: ubiquinone biosynthetic process via 3,4-dihydroxy-5-polyprenylbenzoate	0.00E+00
2	GO:0090071: negative regulation of ribosome biogenesis	0.00E+00
3	GO:0006223: uracil salvage	0.00E+00
4	GO:2000121: regulation of removal of superoxide radicals	0.00E+00
5	GO:0016553: base conversion or substitution editing	0.00E+00
6	GO:0042821: pyridoxal biosynthetic process	0.00E+00
7	GO:0070272: proton-transporting ATP synthase complex biogenesis	0.00E+00
8	GO:0042820: vitamin B6 catabolic process	0.00E+00
9	GO:1904966: positive regulation of vitamin E biosynthetic process	0.00E+00
10	GO:0018023: peptidyl-lysine trimethylation	0.00E+00
11	GO:1904964: positive regulation of phytol biosynthetic process	0.00E+00
12	GO:0006399: tRNA metabolic process	0.00E+00
13	GO:0015979: photosynthesis	6.57E-18
14	GO:0015995: chlorophyll biosynthetic process	2.70E-15
15	GO:0006412: translation	4.51E-13
16	GO:0042254: ribosome biogenesis	6.17E-11
17	GO:0032544: plastid translation	2.21E-09
18	GO:0009735: response to cytokinin	2.50E-09
19	GO:0010027: thylakoid membrane organization	6.10E-09
20	GO:0090391: granum assembly	4.77E-08
21	GO:0006782: protoporphyrinogen IX biosynthetic process	8.94E-07
22	GO:0009658: chloroplast organization	2.81E-06
23	GO:0010207: photosystem II assembly	3.19E-06
24	GO:1902326: positive regulation of chlorophyll biosynthetic process	5.67E-06
25	GO:0010196: nonphotochemical quenching	8.00E-06
26	GO:0006783: heme biosynthetic process	2.37E-05
27	GO:0009773: photosynthetic electron transport in photosystem I	5.22E-05
28	GO:0031365: N-terminal protein amino acid modification	1.22E-04
29	GO:0010190: cytochrome b6f complex assembly	1.76E-04
30	GO:1901259: chloroplast rRNA processing	2.38E-04
31	GO:0009772: photosynthetic electron transport in photosystem II	3.09E-04
32	GO:0009443: pyridoxal 5'-phosphate salvage	3.55E-04
33	GO:0006438: valyl-tRNA aminoacylation	3.55E-04
34	GO:0043489: RNA stabilization	3.55E-04
35	GO:0042371: vitamin K biosynthetic process	3.55E-04
36	GO:0043686: co-translational protein modification	3.55E-04
37	GO:1902458: positive regulation of stomatal opening	3.55E-04
38	GO:0034337: RNA folding	3.55E-04
39	GO:0071588: hydrogen peroxide mediated signaling pathway	3.55E-04
40	GO:0006779: porphyrin-containing compound biosynthetic process	6.73E-04
41	GO:0018026: peptidyl-lysine monomethylation	7.72E-04
42	GO:0080183: response to photooxidative stress	7.72E-04
43	GO:0006729: tetrahydrobiopterin biosynthetic process	7.72E-04
44	GO:1903426: regulation of reactive oxygen species biosynthetic process	7.72E-04
45	GO:0006568: tryptophan metabolic process	7.72E-04
46	GO:0030388: fructose 1,6-bisphosphate metabolic process	7.72E-04
47	GO:0009627: systemic acquired resistance	9.79E-04
48	GO:0018298: protein-chromophore linkage	1.19E-03
49	GO:0006000: fructose metabolic process	1.25E-03
50	GO:0006518: peptide metabolic process	1.25E-03
51	GO:0051604: protein maturation	1.25E-03
52	GO:0071492: cellular response to UV-A	1.25E-03
53	GO:0019253: reductive pentose-phosphate cycle	1.31E-03
54	GO:0034599: cellular response to oxidative stress	1.69E-03
55	GO:0006241: CTP biosynthetic process	1.80E-03
56	GO:0009052: pentose-phosphate shunt, non-oxidative branch	1.80E-03
57	GO:0006165: nucleoside diphosphate phosphorylation	1.80E-03
58	GO:0006228: UTP biosynthetic process	1.80E-03
59	GO:0080158: chloroplast ribulose bisphosphate carboxylase complex biogenesis	1.80E-03
60	GO:2001141: regulation of RNA biosynthetic process	1.80E-03
61	GO:0071484: cellular response to light intensity	1.80E-03
62	GO:0051085: chaperone mediated protein folding requiring cofactor	1.80E-03
63	GO:0009409: response to cold	1.82E-03
64	GO:0019344: cysteine biosynthetic process	1.82E-03
65	GO:0045454: cell redox homeostasis	1.86E-03
66	GO:0019464: glycine decarboxylation via glycine cleavage system	2.42E-03
67	GO:0009765: photosynthesis, light harvesting	2.42E-03
68	GO:0006183: GTP biosynthetic process	2.42E-03
69	GO:2000122: negative regulation of stomatal complex development	2.42E-03
70	GO:0006546: glycine catabolic process	2.42E-03
71	GO:0006021: inositol biosynthetic process	2.42E-03
72	GO:0044206: UMP salvage	2.42E-03
73	GO:0010037: response to carbon dioxide	2.42E-03
74	GO:0015976: carbon utilization	2.42E-03
75	GO:0071486: cellular response to high light intensity	2.42E-03
76	GO:0034052: positive regulation of plant-type hypersensitive response	3.09E-03
77	GO:0032543: mitochondrial translation	3.09E-03
78	GO:0010236: plastoquinone biosynthetic process	3.09E-03
79	GO:0043097: pyrimidine nucleoside salvage	3.09E-03
80	GO:0045038: protein import into chloroplast thylakoid membrane	3.09E-03
81	GO:0000413: protein peptidyl-prolyl isomerization	3.34E-03
82	GO:0006086: acetyl-CoA biosynthetic process from pyruvate	3.82E-03
83	GO:0006206: pyrimidine nucleobase metabolic process	3.82E-03
84	GO:0032973: amino acid export	3.82E-03
85	GO:0046855: inositol phosphate dephosphorylation	3.82E-03
86	GO:0009955: adaxial/abaxial pattern specification	4.60E-03
87	GO:0071470: cellular response to osmotic stress	4.60E-03
88	GO:0042372: phylloquinone biosynthetic process	4.60E-03
89	GO:0042026: protein refolding	4.60E-03
90	GO:0017148: negative regulation of translation	4.60E-03
91	GO:0010189: vitamin E biosynthetic process	4.60E-03
92	GO:0009854: oxidative photosynthetic carbon pathway	4.60E-03
93	GO:0010019: chloroplast-nucleus signaling pathway	4.60E-03
94	GO:0010555: response to mannitol	4.60E-03
95	GO:0032502: developmental process	4.75E-03
96	GO:0009828: plant-type cell wall loosening	5.40E-03
97	GO:0043090: amino acid import	5.44E-03
98	GO:0006400: tRNA modification	5.44E-03
99	GO:0006826: iron ion transport	5.44E-03
100	GO:0080167: response to karrikin	5.75E-03
101	GO:0048564: photosystem I assembly	6.32E-03
102	GO:0009642: response to light intensity	6.32E-03
103	GO:0043068: positive regulation of programmed cell death	6.32E-03
104	GO:0042255: ribosome assembly	6.32E-03
105	GO:0006353: DNA-templated transcription, termination	6.32E-03
106	GO:2000070: regulation of response to water deprivation	6.32E-03
107	GO:0006002: fructose 6-phosphate metabolic process	7.25E-03
108	GO:0071482: cellular response to light stimulus	7.25E-03
109	GO:0015996: chlorophyll catabolic process	7.25E-03
110	GO:0007186: G-protein coupled receptor signaling pathway	7.25E-03
111	GO:0009657: plastid organization	7.25E-03
112	GO:0017004: cytochrome complex assembly	7.25E-03
113	GO:0009245: lipid A biosynthetic process	8.22E-03
114	GO:0010206: photosystem II repair	8.22E-03
115	GO:0080144: amino acid homeostasis	8.22E-03
116	GO:0042742: defense response to bacterium	8.48E-03
117	GO:0009631: cold acclimation	9.74E-03
118	GO:0006535: cysteine biosynthetic process from serine	1.03E-02
119	GO:0006949: syncytium formation	1.03E-02
120	GO:0009637: response to blue light	1.07E-02
121	GO:0055085: transmembrane transport	1.12E-02
122	GO:0019684: photosynthesis, light reaction	1.14E-02
123	GO:0043085: positive regulation of catalytic activity	1.14E-02
124	GO:0006415: translational termination	1.14E-02
125	GO:0006352: DNA-templated transcription, initiation	1.14E-02
126	GO:0018119: peptidyl-cysteine S-nitrosylation	1.14E-02
127	GO:0006457: protein folding	1.16E-02
128	GO:0006790: sulfur compound metabolic process	1.26E-02
129	GO:0045037: protein import into chloroplast stroma	1.26E-02
130	GO:0055114: oxidation-reduction process	1.35E-02
131	GO:0010628: positive regulation of gene expression	1.38E-02
132	GO:0006006: glucose metabolic process	1.38E-02
133	GO:0010114: response to red light	1.38E-02
134	GO:0006094: gluconeogenesis	1.38E-02
135	GO:0009767: photosynthetic electron transport chain	1.38E-02
136	GO:0005986: sucrose biosynthetic process	1.38E-02
137	GO:0010020: chloroplast fission	1.50E-02
138	GO:0010167: response to nitrate	1.62E-02
139	GO:0019853: L-ascorbic acid biosynthetic process	1.62E-02
140	GO:0010039: response to iron ion	1.62E-02
141	GO:0046854: phosphatidylinositol phosphorylation	1.62E-02
142	GO:0009664: plant-type cell wall organization	1.74E-02
143	GO:0006636: unsaturated fatty acid biosynthetic process	1.76E-02
144	GO:0009116: nucleoside metabolic process	1.89E-02
145	GO:0000027: ribosomal large subunit assembly	1.89E-02
146	GO:0019953: sexual reproduction	2.03E-02
147	GO:0006418: tRNA aminoacylation for protein translation	2.03E-02
148	GO:0007017: microtubule-based process	2.03E-02
149	GO:0009768: photosynthesis, light harvesting in photosystem I	2.03E-02
150	GO:0061077: chaperone-mediated protein folding	2.17E-02
151	GO:0006096: glycolytic process	2.21E-02
152	GO:0009814: defense response, incompatible interaction	2.31E-02
153	GO:0016226: iron-sulfur cluster assembly	2.31E-02
154	GO:0007005: mitochondrion organization	2.31E-02
155	GO:0009831: plant-type cell wall modification involved in multidimensional cell growth	2.46E-02
156	GO:0009411: response to UV	2.46E-02
157	GO:0009416: response to light stimulus	2.46E-02
158	GO:0016117: carotenoid biosynthetic process	2.77E-02
159	GO:0042335: cuticle development	2.92E-02
160	GO:0080022: primary root development	2.92E-02
161	GO:0006662: glycerol ether metabolic process	3.08E-02
162	GO:0010182: sugar mediated signaling pathway	3.08E-02
163	GO:0009741: response to brassinosteroid	3.08E-02
164	GO:0015986: ATP synthesis coupled proton transport	3.25E-02
165	GO:0019252: starch biosynthetic process	3.41E-02
166	GO:0000302: response to reactive oxygen species	3.58E-02
167	GO:0015031: protein transport	3.70E-02
168	GO:0042744: hydrogen peroxide catabolic process	3.79E-02
169	GO:0009790: embryo development	3.88E-02
170	GO:1901657: glycosyl compound metabolic process	3.93E-02
171	GO:0009567: double fertilization forming a zygote and endosperm	4.11E-02
172	GO:0006633: fatty acid biosynthetic process	4.17E-02
173	GO:0010286: heat acclimation	4.29E-02

Rank	GO Term	Adjusted P value
1	GO:0033728: divinyl chlorophyllide a 8-vinyl-reductase activity	0.00E+00
2	GO:0050236: pyridoxine:NADP 4-dehydrogenase activity	0.00E+00
3	GO:0008887: glycerate kinase activity	0.00E+00
4	GO:0045550: geranylgeranyl reductase activity	0.00E+00
5	GO:0048307: ferredoxin-nitrite reductase activity	0.00E+00
6	GO:0051744: 3,8-divinyl protochlorophyllide a 8-vinyl reductase activity	0.00E+00
7	GO:0046428: 1,4-dihydroxy-2-naphthoate octaprenyltransferase activity	0.00E+00
8	GO:0050278: sedoheptulose-bisphosphatase activity	0.00E+00
9	GO:0004853: uroporphyrinogen decarboxylase activity	0.00E+00
10	GO:0050421: nitrite reductase (NO-forming) activity	0.00E+00
11	GO:0015038: glutathione disulfide oxidoreductase activity	0.00E+00
12	GO:0051738: xanthophyll binding	0.00E+00
13	GO:0047889: ferredoxin-nitrate reductase activity	0.00E+00
14	GO:0009974: zeinoxanthin epsilon hydroxylase activity	0.00E+00
15	GO:0003735: structural constituent of ribosome	1.09E-15
16	GO:0019843: rRNA binding	1.93E-14
17	GO:0016851: magnesium chelatase activity	2.30E-07
18	GO:0016168: chlorophyll binding	6.27E-06
19	GO:0022891: substrate-specific transmembrane transporter activity	1.52E-05
20	GO:0003755: peptidyl-prolyl cis-trans isomerase activity	5.05E-05
21	GO:0043495: protein anchor	7.81E-05
22	GO:0051920: peroxiredoxin activity	2.38E-04
23	GO:0019899: enzyme binding	3.09E-04
24	GO:0004425: indole-3-glycerol-phosphate synthase activity	3.55E-04
25	GO:0050567: glutaminyl-tRNA synthase (glutamine-hydrolyzing) activity	3.55E-04
26	GO:0042586: peptide deformylase activity	3.55E-04
27	GO:0008124: 4-alpha-hydroxytetrahydrobiopterin dehydratase activity	3.55E-04
28	GO:0004832: valine-tRNA ligase activity	3.55E-04
29	GO:0030785: [ribulose-bisphosphate carboxylase]-lysine N-methyltransferase activity	3.55E-04
30	GO:0010347: L-galactose-1-phosphate phosphatase activity	3.55E-04
31	GO:0042286: glutamate-1-semialdehyde 2,1-aminomutase activity	3.55E-04
32	GO:0030794: (S)-coclaurine-N-methyltransferase activity	3.55E-04
33	GO:0051537: 2 iron, 2 sulfur cluster binding	3.84E-04
34	GO:0004033: aldo-keto reductase (NADP) activity	3.89E-04
35	GO:0016209: antioxidant activity	3.89E-04
36	GO:0052832: inositol monophosphate 3-phosphatase activity	7.72E-04
37	GO:0042132: fructose 1,6-bisphosphate 1-phosphatase activity	7.72E-04
38	GO:0016630: protochlorophyllide reductase activity	7.72E-04
39	GO:0008934: inositol monophosphate 1-phosphatase activity	7.72E-04
40	GO:0052833: inositol monophosphate 4-phosphatase activity	7.72E-04
41	GO:0047100: glyceraldehyde-3-phosphate dehydrogenase (NADP+) (phosphorylating) activity	7.72E-04
42	GO:0008883: glutamyl-tRNA reductase activity	7.72E-04
43	GO:0042389: omega-3 fatty acid desaturase activity	7.72E-04
44	GO:0010277: chlorophyllide a oxygenase [overall] activity	1.25E-03
45	GO:0004148: dihydrolipoyl dehydrogenase activity	1.25E-03
46	GO:0004751: ribose-5-phosphate isomerase activity	1.25E-03
47	GO:0070402: NADPH binding	1.25E-03
48	GO:0016620: oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor	1.25E-03
49	GO:0004742: dihydrolipoyllysine-residue acetyltransferase activity	1.80E-03
50	GO:0004375: glycine dehydrogenase (decarboxylating) activity	1.80E-03
51	GO:0016149: translation release factor activity, codon specific	1.80E-03
52	GO:0016628: oxidoreductase activity, acting on the CH-CH group of donors, NAD or NADP as acceptor	1.80E-03
53	GO:0004550: nucleoside diphosphate kinase activity	1.80E-03
54	GO:0043023: ribosomal large subunit binding	1.80E-03
55	GO:0008097: 5S rRNA binding	1.80E-03
56	GO:0005528: FK506 binding	1.82E-03
57	GO:0016987: sigma factor activity	2.42E-03
58	GO:0004659: prenyltransferase activity	2.42E-03
59	GO:0016279: protein-lysine N-methyltransferase activity	2.42E-03
60	GO:0001053: plastid sigma factor activity	2.42E-03
61	GO:0004845: uracil phosphoribosyltransferase activity	2.42E-03
62	GO:0003959: NADPH dehydrogenase activity	3.09E-03
63	GO:0030414: peptidase inhibitor activity	3.09E-03
64	GO:0004040: amidase activity	3.09E-03
65	GO:0004130: cytochrome-c peroxidase activity	3.82E-03
66	GO:0031177: phosphopantetheine binding	3.82E-03
67	GO:0016688: L-ascorbate peroxidase activity	3.82E-03
68	GO:0042578: phosphoric ester hydrolase activity	3.82E-03
69	GO:0004601: peroxidase activity	4.15E-03
70	GO:0045156: electron transporter, transferring electrons within the cyclic electron transport pathway of photosynthesis activity	4.60E-03
71	GO:0008441: 3'(2'),5'-bisphosphate nucleotidase activity	4.60E-03
72	GO:0004849: uridine kinase activity	4.60E-03
73	GO:0000035: acyl binding	4.60E-03
74	GO:0004124: cysteine synthase activity	4.60E-03
75	GO:0015035: protein disulfide oxidoreductase activity	5.27E-03
76	GO:0008235: metalloexopeptidase activity	5.44E-03
77	GO:0008237: metallopeptidase activity	5.73E-03
78	GO:0000036: ACP phosphopantetheine attachment site binding involved in fatty acid biosynthetic process	6.32E-03
79	GO:0005509: calcium ion binding	7.24E-03
80	GO:0016717: oxidoreductase activity, acting on paired donors, with oxidation of a pair of donors resulting in the reduction of molecular oxygen to two molecules of water	7.25E-03
81	GO:0003747: translation release factor activity	8.22E-03
82	GO:0004222: metalloendopeptidase activity	9.29E-03
83	GO:0008047: enzyme activator activity	1.03E-02
84	GO:0008794: arsenate reductase (glutaredoxin) activity	1.14E-02
85	GO:0004177: aminopeptidase activity	1.14E-02
86	GO:0044183: protein binding involved in protein folding	1.14E-02
87	GO:0009055: electron carrier activity	1.16E-02
88	GO:0051539: 4 iron, 4 sulfur cluster binding	1.22E-02
89	GO:0050661: NADP binding	1.22E-02
90	GO:0042802: identical protein binding	1.38E-02
91	GO:0004089: carbonate dehydratase activity	1.38E-02
92	GO:0031072: heat shock protein binding	1.38E-02
93	GO:0008266: poly(U) RNA binding	1.50E-02
94	GO:0031409: pigment binding	1.76E-02
95	GO:0003729: mRNA binding	1.83E-02
96	GO:0051536: iron-sulfur cluster binding	1.89E-02
97	GO:0043424: protein histidine kinase binding	2.03E-02
98	GO:0004176: ATP-dependent peptidase activity	2.17E-02
99	GO:0003723: RNA binding	2.31E-02
100	GO:0003727: single-stranded RNA binding	2.61E-02
101	GO:0051082: unfolded protein binding	2.66E-02
102	GO:0047134: protein-disulfide reductase activity	2.77E-02
103	GO:0004812: aminoacyl-tRNA ligase activity	2.77E-02
104	GO:0046933: proton-transporting ATP synthase activity, rotational mechanism	3.08E-02
105	GO:0004791: thioredoxin-disulfide reductase activity	3.25E-02
106	GO:0030170: pyridoxal phosphate binding	3.69E-02
107	GO:0016491: oxidoreductase activity	3.92E-02
108	GO:0016671: oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor	3.93E-02
109	GO:0008483: transaminase activity	4.29E-02
110	GO:0016722: oxidoreductase activity, oxidizing metal ions	4.29E-02
111	GO:0005200: structural constituent of cytoskeleton	4.29E-02
112	GO:0046872: metal ion binding	4.34E-02

Rank	GO Term	Adjusted P value
1	GO:0009575: chromoplast stroma	0.00E+00
2	GO:0009515: granal stacked thylakoid	0.00E+00
3	GO:0044391: ribosomal subunit	0.00E+00
4	GO:0009507: chloroplast	1.51E-110
5	GO:0009570: chloroplast stroma	5.40E-64
6	GO:0009535: chloroplast thylakoid membrane	3.04E-56
7	GO:0009941: chloroplast envelope	1.06E-51
8	GO:0009579: thylakoid	2.52E-40
9	GO:0009534: chloroplast thylakoid	3.46E-24
10	GO:0009543: chloroplast thylakoid lumen	2.43E-22
11	GO:0005840: ribosome	9.69E-19
12	GO:0031977: thylakoid lumen	1.32E-15
13	GO:0009654: photosystem II oxygen evolving complex	5.59E-11
14	GO:0019898: extrinsic component of membrane	4.83E-08
15	GO:0030095: chloroplast photosystem II	3.19E-06
16	GO:0042651: thylakoid membrane	8.40E-06
17	GO:0009706: chloroplast inner membrane	1.54E-05
18	GO:0010007: magnesium chelatase complex	1.99E-05
19	GO:0009536: plastid	2.91E-05
20	GO:0009523: photosystem II	3.93E-05
21	GO:0000311: plastid large ribosomal subunit	6.50E-05
22	GO:0010319: stromule	7.33E-05
23	GO:0015935: small ribosomal subunit	2.07E-04
24	GO:0031969: chloroplast membrane	3.04E-04
25	GO:0030956: glutamyl-tRNA(Gln) amidotransferase complex	3.55E-04
26	GO:0009344: nitrite reductase complex [NAD(P)H]	3.55E-04
27	GO:0048046: apoplast	4.54E-04
28	GO:0042170: plastid membrane	7.72E-04
29	GO:0010287: plastoglobule	1.20E-03
30	GO:0009528: plastid inner membrane	1.25E-03
31	GO:0009509: chromoplast	1.25E-03
32	GO:0015934: large ribosomal subunit	1.43E-03
33	GO:0005960: glycine cleavage complex	1.80E-03
34	GO:0009532: plastid stroma	2.20E-03
35	GO:0009526: plastid envelope	2.42E-03
36	GO:0009517: PSII associated light-harvesting complex II	2.42E-03
37	GO:0009527: plastid outer membrane	2.42E-03
38	GO:0055035: plastid thylakoid membrane	3.09E-03
39	GO:0016020: membrane	3.42E-03
40	GO:0045261: proton-transporting ATP synthase complex, catalytic core F(1)	3.82E-03
41	GO:0009533: chloroplast stromal thylakoid	5.44E-03
42	GO:0009538: photosystem I reaction center	6.32E-03
43	GO:0022626: cytosolic ribosome	6.83E-03
44	GO:0009539: photosystem II reaction center	7.25E-03
45	GO:0010598: NAD(P)H dehydrogenase complex (plastoquinone)	8.22E-03
46	GO:0045298: tubulin complex	8.22E-03
47	GO:0005763: mitochondrial small ribosomal subunit	8.22E-03
48	GO:0032040: small-subunit processome	1.26E-02
49	GO:0009508: plastid chromosome	1.38E-02
50	GO:0030076: light-harvesting complex	1.62E-02
51	GO:0043234: protein complex	1.76E-02
52	GO:0005618: cell wall	2.22E-02
53	GO:0009522: photosystem I	3.25E-02
54	GO:0009295: nucleoid	4.29E-02
55	GO:0005778: peroxisomal membrane	4.29E-02
56	GO:0030529: intracellular ribonucleoprotein complex	4.65E-02