Gene type: Transcription factor Metabolic gene Others DE type: Up Down Slightly_up Slightly_down Mixeded Others

GO Enrichment Analysis of Co-expressed Genes with

AT3G51420

GO-BP
GO-MF
GO-CC
RankGO TermAdjusted P value
1GO:0051503: adenine nucleotide transport0.00E+00
2GO:0017038: protein import0.00E+00
3GO:0016553: base conversion or substitution editing0.00E+00
4GO:0061635: regulation of protein complex stability0.00E+00
5GO:0006428: isoleucyl-tRNA aminoacylation0.00E+00
6GO:0042821: pyridoxal biosynthetic process0.00E+00
7GO:0042820: vitamin B6 catabolic process0.00E+00
8GO:0046471: phosphatidylglycerol metabolic process0.00E+00
9GO:0042371: vitamin K biosynthetic process0.00E+00
10GO:0006399: tRNA metabolic process0.00E+00
11GO:0006429: leucyl-tRNA aminoacylation0.00E+00
12GO:0010275: NAD(P)H dehydrogenase complex assembly0.00E+00
13GO:0090706: specification of plant organ position0.00E+00
14GO:1901918: negative regulation of exoribonuclease activity0.00E+00
15GO:0032194: ubiquinone biosynthetic process via 3,4-dihydroxy-5-polyprenylbenzoate0.00E+00
16GO:0006412: translation3.11E-12
17GO:0015979: photosynthesis1.41E-09
18GO:0042254: ribosome biogenesis2.57E-09
19GO:0032544: plastid translation1.32E-08
20GO:0009773: photosynthetic electron transport in photosystem I1.07E-07
21GO:0009658: chloroplast organization3.45E-06
22GO:0010207: photosystem II assembly1.26E-05
23GO:1902326: positive regulation of chlorophyll biosynthetic process1.30E-05
24GO:0006636: unsaturated fatty acid biosynthetic process2.05E-05
25GO:0009735: response to cytokinin3.77E-05
26GO:0015995: chlorophyll biosynthetic process3.90E-05
27GO:0006518: peptide metabolic process4.36E-05
28GO:0010206: photosystem II repair6.56E-05
29GO:0006810: transport1.94E-04
30GO:0045038: protein import into chloroplast thylakoid membrane2.44E-04
31GO:0010027: thylakoid membrane organization2.79E-04
32GO:0042549: photosystem II stabilization3.43E-04
33GO:0018298: protein-chromophore linkage4.31E-04
34GO:0061077: chaperone-mediated protein folding4.88E-04
35GO:0000476: maturation of 4.5S rRNA5.46E-04
36GO:0009443: pyridoxal 5'-phosphate salvage5.46E-04
37GO:0000967: rRNA 5'-end processing5.46E-04
38GO:0043489: RNA stabilization5.46E-04
39GO:1904966: positive regulation of vitamin E biosynthetic process5.46E-04
40GO:0071370: cellular response to gibberellin stimulus5.46E-04
41GO:0000481: maturation of 5S rRNA5.46E-04
42GO:1904964: positive regulation of phytol biosynthetic process5.46E-04
43GO:1902458: positive regulation of stomatal opening5.46E-04
44GO:0034337: RNA folding5.46E-04
45GO:0010450: inflorescence meristem growth5.46E-04
46GO:0010729: positive regulation of hydrogen peroxide biosynthetic process5.46E-04
47GO:0046901: tetrahydrofolylpolyglutamate biosynthetic process5.46E-04
48GO:0006821: chloride transport5.86E-04
49GO:0009772: photosynthetic electron transport in photosystem II5.86E-04
50GO:0006605: protein targeting7.29E-04
51GO:0071482: cellular response to light stimulus8.88E-04
52GO:0010114: response to red light9.20E-04
53GO:1900871: chloroplast mRNA modification1.17E-03
54GO:0034755: iron ion transmembrane transport1.17E-03
55GO:1904143: positive regulation of carotenoid biosynthetic process1.17E-03
56GO:1903426: regulation of reactive oxygen species biosynthetic process1.17E-03
57GO:0030388: fructose 1,6-bisphosphate metabolic process1.17E-03
58GO:0034470: ncRNA processing1.17E-03
59GO:0009409: response to cold1.23E-03
60GO:0010205: photoinhibition1.25E-03
61GO:0019684: photosynthesis, light reaction1.69E-03
62GO:0006352: DNA-templated transcription, initiation1.69E-03
63GO:0006000: fructose metabolic process1.93E-03
64GO:0006954: inflammatory response1.93E-03
65GO:0006013: mannose metabolic process1.93E-03
66GO:0006617: SRP-dependent cotranslational protein targeting to membrane, signal sequence recognition1.93E-03
67GO:0005977: glycogen metabolic process1.93E-03
68GO:0045165: cell fate commitment1.93E-03
69GO:0006011: UDP-glucose metabolic process1.93E-03
70GO:0006006: glucose metabolic process2.20E-03
71GO:0009793: embryo development ending in seed dormancy2.20E-03
72GO:0006094: gluconeogenesis2.20E-03
73GO:0009767: photosynthetic electron transport chain2.20E-03
74GO:0019253: reductive pentose-phosphate cycle2.48E-03
75GO:0090351: seedling development2.79E-03
76GO:0009800: cinnamic acid biosynthetic process2.80E-03
77GO:0046902: regulation of mitochondrial membrane permeability2.80E-03
78GO:0016556: mRNA modification2.80E-03
79GO:2001141: regulation of RNA biosynthetic process2.80E-03
80GO:1902476: chloride transmembrane transport2.80E-03
81GO:0051513: regulation of monopolar cell growth2.80E-03
82GO:0009152: purine ribonucleotide biosynthetic process2.80E-03
83GO:0046653: tetrahydrofolate metabolic process2.80E-03
84GO:0045727: positive regulation of translation3.76E-03
85GO:2000122: negative regulation of stomatal complex development3.76E-03
86GO:0015994: chlorophyll metabolic process3.76E-03
87GO:0006546: glycine catabolic process3.76E-03
88GO:0071483: cellular response to blue light3.76E-03
89GO:0010037: response to carbon dioxide3.76E-03
90GO:0010109: regulation of photosynthesis3.76E-03
91GO:0015976: carbon utilization3.76E-03
92GO:0019464: glycine decarboxylation via glycine cleavage system3.76E-03
93GO:0006418: tRNA aminoacylation for protein translation3.81E-03
94GO:0009768: photosynthesis, light harvesting in photosystem I3.81E-03
95GO:0006730: one-carbon metabolic process4.59E-03
96GO:0009247: glycolipid biosynthetic process4.83E-03
97GO:0032543: mitochondrial translation4.83E-03
98GO:0006564: L-serine biosynthetic process4.83E-03
99GO:0010236: plastoquinone biosynthetic process4.83E-03
100GO:1902183: regulation of shoot apical meristem development4.83E-03
101GO:0010158: abaxial cell fate specification4.83E-03
102GO:0009306: protein secretion5.46E-03
103GO:0007623: circadian rhythm5.75E-03
104GO:0009451: RNA modification5.95E-03
105GO:0006655: phosphatidylglycerol biosynthetic process5.99E-03
106GO:0016554: cytidine to uridine editing5.99E-03
107GO:0010190: cytochrome b6f complex assembly5.99E-03
108GO:0006559: L-phenylalanine catabolic process5.99E-03
109GO:0032973: amino acid export5.99E-03
110GO:0000741: karyogamy5.99E-03
111GO:0010942: positive regulation of cell death5.99E-03
112GO:0006354: DNA-templated transcription, elongation5.99E-03
113GO:0000413: protein peptidyl-prolyl isomerization6.40E-03
114GO:0042372: phylloquinone biosynthetic process7.24E-03
115GO:0042026: protein refolding7.24E-03
116GO:0000462: maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)7.24E-03
117GO:0006458: 'de novo' protein folding7.24E-03
118GO:1901259: chloroplast rRNA processing7.24E-03
119GO:0010019: chloroplast-nucleus signaling pathway7.24E-03
120GO:0009646: response to absence of light7.43E-03
121GO:0006614: SRP-dependent cotranslational protein targeting to membrane8.57E-03
122GO:0009645: response to low light intensity stimulus8.57E-03
123GO:0050829: defense response to Gram-negative bacterium8.57E-03
124GO:0043090: amino acid import8.57E-03
125GO:0032502: developmental process9.13E-03
126GO:0006096: glycolytic process9.18E-03
127GO:0010439: regulation of glucosinolate biosynthetic process9.98E-03
128GO:0009850: auxin metabolic process9.98E-03
129GO:0019375: galactolipid biosynthetic process9.98E-03
130GO:0042255: ribosome assembly9.98E-03
131GO:0032508: DNA duplex unwinding9.98E-03
132GO:2000070: regulation of response to water deprivation9.98E-03
133GO:0010492: maintenance of shoot apical meristem identity9.98E-03
134GO:0052543: callose deposition in cell wall9.98E-03
135GO:0048564: photosystem I assembly9.98E-03
136GO:0009657: plastid organization1.15E-02
137GO:0017004: cytochrome complex assembly1.15E-02
138GO:0010093: specification of floral organ identity1.15E-02
139GO:0009699: phenylpropanoid biosynthetic process1.15E-02
140GO:0006002: fructose 6-phosphate metabolic process1.15E-02
141GO:0006098: pentose-phosphate shunt1.30E-02
142GO:0080144: amino acid homeostasis1.30E-02
143GO:2000024: regulation of leaf development1.30E-02
144GO:0048507: meristem development1.30E-02
145GO:0009051: pentose-phosphate shunt, oxidative branch1.30E-02
146GO:0042128: nitrate assimilation1.39E-02
147GO:1900865: chloroplast RNA modification1.47E-02
148GO:0009638: phototropism1.47E-02
149GO:0055114: oxidation-reduction process1.77E-02
150GO:0010218: response to far red light1.79E-02
151GO:0009698: phenylpropanoid metabolic process1.82E-02
152GO:0009089: lysine biosynthetic process via diaminopimelate1.82E-02
153GO:0009073: aromatic amino acid family biosynthetic process1.82E-02
154GO:0043085: positive regulation of catalytic activity1.82E-02
155GO:0006879: cellular iron ion homeostasis1.82E-02
156GO:0006415: translational termination1.82E-02
157GO:0009750: response to fructose1.82E-02
158GO:0018119: peptidyl-cysteine S-nitrosylation1.82E-02
159GO:0009790: embryo development1.89E-02
160GO:0015706: nitrate transport2.00E-02
161GO:0005983: starch catabolic process2.00E-02
162GO:0016024: CDP-diacylglycerol biosynthetic process2.00E-02
163GO:0045037: protein import into chloroplast stroma2.00E-02
164GO:0009637: response to blue light2.06E-02
165GO:0009853: photorespiration2.06E-02
166GO:0010628: positive regulation of gene expression2.19E-02
167GO:0005986: sucrose biosynthetic process2.19E-02
168GO:0009933: meristem structural organization2.39E-02
169GO:0048768: root hair cell tip growth2.39E-02
170GO:0006508: proteolysis2.52E-02
171GO:0010167: response to nitrate2.59E-02
172GO:0005985: sucrose metabolic process2.59E-02
173GO:0009644: response to high light intensity2.88E-02
174GO:0009944: polarity specification of adaxial/abaxial axis3.01E-02
175GO:0000027: ribosomal large subunit assembly3.01E-02
176GO:0031408: oxylipin biosynthetic process3.46E-02
177GO:0019915: lipid storage3.46E-02
178GO:0006364: rRNA processing3.59E-02
179GO:0016226: iron-sulfur cluster assembly3.69E-02
180GO:0030433: ubiquitin-dependent ERAD pathway3.69E-02
181GO:0010017: red or far-red light signaling pathway3.69E-02
182GO:0051603: proteolysis involved in cellular protein catabolic process3.71E-02
183GO:0009561: megagametogenesis4.17E-02
184GO:0016117: carotenoid biosynthetic process4.41E-02
185GO:0009789: positive regulation of abscisic acid-activated signaling pathway4.41E-02
186GO:0080022: primary root development4.66E-02
187GO:0009958: positive gravitropism4.91E-02
188GO:0010154: fruit development4.91E-02
189GO:0010197: polar nucleus fusion4.91E-02
190GO:0009741: response to brassinosteroid4.91E-02
RankGO TermAdjusted P value
1GO:0016754: sinapoylglucose-malate O-sinapoyltransferase activity0.00E+00
2GO:0050236: pyridoxine:NADP 4-dehydrogenase activity0.00E+00
3GO:0009979: 16:0 monogalactosyldiacylglycerol desaturase activity0.00E+00
4GO:0046428: 1,4-dihydroxy-2-naphthoate octaprenyltransferase activity0.00E+00
5GO:0004822: isoleucine-tRNA ligase activity0.00E+00
6GO:0004823: leucine-tRNA ligase activity0.00E+00
7GO:0008935: 1,4-dihydroxy-2-naphthoyl-CoA synthase activity0.00E+00
8GO:0008942: nitrite reductase [NAD(P)H] activity0.00E+00
9GO:0005048: signal sequence binding0.00E+00
10GO:0052637: delta 3-trans-hexadecenoic acid phosphatidylglycerol desaturase activity0.00E+00
11GO:0009974: zeinoxanthin epsilon hydroxylase activity0.00E+00
12GO:0046406: magnesium protoporphyrin IX methyltransferase activity0.00E+00
13GO:0047513: 1,2-alpha-L-fucosidase activity0.00E+00
14GO:0019843: rRNA binding1.56E-24
15GO:0003735: structural constituent of ribosome2.17E-16
16GO:0003755: peptidyl-prolyl cis-trans isomerase activity5.09E-09
17GO:0005528: FK506 binding2.14E-08
18GO:0016851: magnesium chelatase activity7.44E-07
19GO:0004326: tetrahydrofolylpolyglutamate synthase activity1.30E-05
20GO:0002161: aminoacyl-tRNA editing activity4.36E-05
21GO:0016987: sigma factor activity1.60E-04
22GO:0001053: plastid sigma factor activity1.60E-04
23GO:0031072: heat shock protein binding2.02E-04
24GO:0008266: poly(U) RNA binding2.40E-04
25GO:0016168: chlorophyll binding3.06E-04
26GO:0005247: voltage-gated chloride channel activity3.43E-04
27GO:0045156: electron transporter, transferring electrons within the cyclic electron transport pathway of photosynthesis activity4.58E-04
28GO:0004222: metalloendopeptidase activity5.03E-04
29GO:0052638: indole-3-butyrate beta-glucosyltransferase activity5.46E-04
30GO:0009671: nitrate:proton symporter activity5.46E-04
31GO:0045485: omega-6 fatty acid desaturase activity5.46E-04
32GO:0046906: tetrapyrrole binding5.46E-04
33GO:0019899: enzyme binding5.86E-04
34GO:0004033: aldo-keto reductase (NADP) activity7.29E-04
35GO:0016717: oxidoreductase activity, acting on paired donors, with oxidation of a pair of donors resulting in the reduction of molecular oxygen to two molecules of water8.88E-04
36GO:0047158: sinapoylglucose-sinapoylglucose O-sinapoyltransferase activity1.17E-03
37GO:0008839: 4-hydroxy-tetrahydrodipicolinate reductase1.17E-03
38GO:0047100: glyceraldehyde-3-phosphate dehydrogenase (NADP+) (phosphorylating) activity1.17E-03
39GO:0047746: chlorophyllase activity1.17E-03
40GO:0042389: omega-3 fatty acid desaturase activity1.17E-03
41GO:0004618: phosphoglycerate kinase activity1.17E-03
42GO:0009977: proton motive force dependent protein transmembrane transporter activity1.17E-03
43GO:0004617: phosphoglycerate dehydrogenase activity1.17E-03
44GO:0046509: 1,2-diacylglycerol 3-beta-galactosyltransferase activity1.17E-03
45GO:0042132: fructose 1,6-bisphosphate 1-phosphatase activity1.17E-03
46GO:0045548: phenylalanine ammonia-lyase activity1.93E-03
47GO:0003983: UTP:glucose-1-phosphate uridylyltransferase activity1.93E-03
48GO:0016742: hydroxymethyl-, formyl- and related transferase activity1.93E-03
49GO:0070402: NADPH binding1.93E-03
50GO:0008864: formyltetrahydrofolate deformylase activity1.93E-03
51GO:0015462: ATPase-coupled protein transmembrane transporter activity1.93E-03
52GO:0051082: unfolded protein binding2.49E-03
53GO:0035250: UDP-galactosyltransferase activity2.80E-03
54GO:0016149: translation release factor activity, codon specific2.80E-03
55GO:0008097: 5S rRNA binding2.80E-03
56GO:0004365: glyceraldehyde-3-phosphate dehydrogenase (NAD+) (phosphorylating) activity2.80E-03
57GO:0008508: bile acid:sodium symporter activity2.80E-03
58GO:0004375: glycine dehydrogenase (decarboxylating) activity2.80E-03
59GO:0031409: pigment binding3.11E-03
60GO:0004607: phosphatidylcholine-sterol O-acyltransferase activity3.76E-03
61GO:0005253: anion channel activity3.76E-03
62GO:0043495: protein anchor3.76E-03
63GO:0003841: 1-acylglycerol-3-phosphate O-acyltransferase activity3.76E-03
64GO:0004659: prenyltransferase activity3.76E-03
65GO:0004345: glucose-6-phosphate dehydrogenase activity3.76E-03
66GO:0016773: phosphotransferase activity, alcohol group as acceptor4.83E-03
67GO:0005471: ATP:ADP antiporter activity4.83E-03
68GO:0008374: O-acyltransferase activity4.83E-03
69GO:0022891: substrate-specific transmembrane transporter activity5.01E-03
70GO:0004185: serine-type carboxypeptidase activity5.06E-03
71GO:0003756: protein disulfide isomerase activity5.46E-03
72GO:0003727: single-stranded RNA binding5.46E-03
73GO:0004812: aminoacyl-tRNA ligase activity5.92E-03
74GO:0004130: cytochrome-c peroxidase activity5.99E-03
75GO:0042578: phosphoric ester hydrolase activity5.99E-03
76GO:0004332: fructose-bisphosphate aldolase activity5.99E-03
77GO:0004559: alpha-mannosidase activity7.24E-03
78GO:0051920: peroxiredoxin activity7.24E-03
79GO:0003899: DNA-directed 5'-3' RNA polymerase activity7.41E-03
80GO:0003723: RNA binding8.77E-03
81GO:0004519: endonuclease activity9.82E-03
82GO:0004564: beta-fructofuranosidase activity9.98E-03
83GO:0016209: antioxidant activity9.98E-03
84GO:0008312: 7S RNA binding9.98E-03
85GO:0016787: hydrolase activity1.05E-02
86GO:0008135: translation factor activity, RNA binding1.15E-02
87GO:0009815: 1-aminocyclopropane-1-carboxylate oxidase activity1.30E-02
88GO:0003747: translation release factor activity1.30E-02
89GO:0004575: sucrose alpha-glucosidase activity1.47E-02
90GO:0005381: iron ion transmembrane transporter activity1.47E-02
91GO:0015112: nitrate transmembrane transporter activity1.47E-02
92GO:0008236: serine-type peptidase activity1.54E-02
93GO:0004864: protein phosphatase inhibitor activity1.64E-02
94GO:0004252: serine-type endopeptidase activity1.77E-02
95GO:0044183: protein binding involved in protein folding1.82E-02
96GO:0000049: tRNA binding2.00E-02
97GO:0016491: oxidoreductase activity2.04E-02
98GO:0004022: alcohol dehydrogenase (NAD) activity2.19E-02
99GO:0004089: carbonate dehydratase activity2.19E-02
100GO:0050661: NADP binding2.35E-02
101GO:0042973: glucan endo-1,3-beta-D-glucosidase activity2.39E-02
102GO:0008146: sulfotransferase activity2.59E-02
103GO:0051537: 2 iron, 2 sulfur cluster binding2.88E-02
104GO:0051536: iron-sulfur cluster binding3.01E-02
105GO:0051287: NAD binding3.23E-02
106GO:0043424: protein histidine kinase binding3.23E-02
107GO:0004707: MAP kinase activity3.46E-02
108GO:0003690: double-stranded DNA binding3.71E-02
109GO:0004601: peroxidase activity4.02E-02
110GO:0008080: N-acetyltransferase activity4.91E-02
RankGO TermAdjusted P value
1GO:0005943: phosphatidylinositol 3-kinase complex, class IA0.00E+00
2GO:0044391: ribosomal subunit0.00E+00
3GO:0009344: nitrite reductase complex [NAD(P)H]0.00E+00
4GO:0009571: proplastid stroma0.00E+00
5GO:0009507: chloroplast1.94E-92
6GO:0009535: chloroplast thylakoid membrane4.13E-48
7GO:0009941: chloroplast envelope1.28E-45
8GO:0009570: chloroplast stroma6.90E-44
9GO:0009534: chloroplast thylakoid6.49E-31
10GO:0009543: chloroplast thylakoid lumen8.23E-28
11GO:0009579: thylakoid1.03E-20
12GO:0031977: thylakoid lumen6.49E-14
13GO:0005840: ribosome1.35E-11
14GO:0031969: chloroplast membrane7.88E-09
15GO:0010598: NAD(P)H dehydrogenase complex (plastoquinone)2.41E-08
16GO:0010007: magnesium chelatase complex1.56E-07
17GO:0000311: plastid large ribosomal subunit1.63E-07
18GO:0009654: photosystem II oxygen evolving complex1.19E-06
19GO:0019898: extrinsic component of membrane8.81E-06
20GO:0009706: chloroplast inner membrane9.39E-06
21GO:0030095: chloroplast photosystem II1.26E-05
22GO:0000312: plastid small ribosomal subunit1.26E-05
23GO:0009533: chloroplast stromal thylakoid2.35E-05
24GO:0009295: nucleoid2.30E-04
25GO:0034707: chloride channel complex3.43E-04
26GO:0015934: large ribosomal subunit5.41E-04
27GO:0009782: photosystem I antenna complex5.46E-04
28GO:0000428: DNA-directed RNA polymerase complex5.46E-04
29GO:0009547: plastid ribosome5.46E-04
30GO:0010287: plastoglobule6.98E-04
31GO:0009523: photosystem II1.10E-03
32GO:0042170: plastid membrane1.17E-03
33GO:0080085: signal recognition particle, chloroplast targeting1.17E-03
34GO:0033281: TAT protein transport complex1.93E-03
35GO:0009536: plastid2.56E-03
36GO:0030076: light-harvesting complex2.79E-03
37GO:0005960: glycine cleavage complex2.80E-03
38GO:0005775: vacuolar lumen2.80E-03
39GO:0042646: plastid nucleoid2.80E-03
40GO:0016020: membrane3.29E-03
41GO:0015935: small ribosomal subunit4.19E-03
42GO:0016363: nuclear matrix7.24E-03
43GO:0005762: mitochondrial large ribosomal subunit7.24E-03
44GO:0009522: photosystem I7.43E-03
45GO:0043231: intracellular membrane-bounded organelle1.01E-02
46GO:0010319: stromule1.10E-02
47GO:0005786: signal recognition particle, endoplasmic reticulum targeting1.15E-02
48GO:0005763: mitochondrial small ribosomal subunit1.30E-02
49GO:0032040: small-subunit processome2.00E-02
50GO:0009508: plastid chromosome2.19E-02
51GO:0019013: viral nucleocapsid2.19E-02
52GO:0042651: thylakoid membrane3.23E-02
53GO:0022627: cytosolic small ribosomal subunit3.31E-02
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Gene type



Gene DE type