co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT3G51260

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0039694: viral RNA genome replication	0.00E+00
2	GO:0042430: indole-containing compound metabolic process	0.00E+00
3	GO:0030149: sphingolipid catabolic process	0.00E+00
4	GO:2000541: positive regulation of protein geranylgeranylation	0.00E+00
5	GO:0072722: response to amitrole	0.00E+00
6	GO:0034976: response to endoplasmic reticulum stress	5.75E-10
7	GO:0009617: response to bacterium	7.41E-10
8	GO:0006457: protein folding	2.20E-09
9	GO:0045454: cell redox homeostasis	2.61E-07
10	GO:0006099: tricarboxylic acid cycle	3.87E-07
11	GO:0046686: response to cadmium ion	3.92E-07
12	GO:0042742: defense response to bacterium	2.26E-06
13	GO:0006102: isocitrate metabolic process	6.48E-06
14	GO:0055114: oxidation-reduction process	6.20E-05
15	GO:0009697: salicylic acid biosynthetic process	8.14E-05
16	GO:0006014: D-ribose metabolic process	1.18E-04
17	GO:0052033: pathogen-associated molecular pattern dependent induction by symbiont of host innate immune response	1.62E-04
18	GO:0030091: protein repair	2.69E-04
19	GO:1990641: response to iron ion starvation	2.77E-04
20	GO:0009700: indole phytoalexin biosynthetic process	2.77E-04
21	GO:0043687: post-translational protein modification	2.77E-04
22	GO:0046244: salicylic acid catabolic process	2.77E-04
23	GO:0050691: regulation of defense response to virus by host	2.77E-04
24	GO:0034975: protein folding in endoplasmic reticulum	2.77E-04
25	GO:0010120: camalexin biosynthetic process	3.32E-04
26	GO:0010112: regulation of systemic acquired resistance	3.99E-04
27	GO:0009866: induced systemic resistance, ethylene mediated signaling pathway	6.09E-04
28	GO:0006101: citrate metabolic process	6.09E-04
29	GO:0015865: purine nucleotide transport	6.09E-04
30	GO:0019752: carboxylic acid metabolic process	6.09E-04
31	GO:0033512: L-lysine catabolic process to acetyl-CoA via saccharopine	6.09E-04
32	GO:0008535: respiratory chain complex IV assembly	6.09E-04
33	GO:0009627: systemic acquired resistance	6.22E-04
34	GO:0009682: induced systemic resistance	6.38E-04
35	GO:0009651: response to salt stress	8.77E-04
36	GO:0002237: response to molecule of bacterial origin	9.28E-04
37	GO:0010272: response to silver ion	9.88E-04
38	GO:0009871: jasmonic acid and ethylene-dependent systemic resistance, ethylene mediated signaling pathway	9.88E-04
39	GO:0032940: secretion by cell	9.88E-04
40	GO:0009062: fatty acid catabolic process	9.88E-04
41	GO:0000162: tryptophan biosynthetic process	1.15E-03
42	GO:0006979: response to oxidative stress	1.25E-03
43	GO:0009863: salicylic acid mediated signaling pathway	1.27E-03
44	GO:0002239: response to oomycetes	1.41E-03
45	GO:0046902: regulation of mitochondrial membrane permeability	1.41E-03
46	GO:0010116: positive regulation of abscisic acid biosynthetic process	1.41E-03
47	GO:0031348: negative regulation of defense response	1.68E-03
48	GO:0046345: abscisic acid catabolic process	1.89E-03
49	GO:0009306: protein secretion	1.99E-03
50	GO:0051603: proteolysis involved in cellular protein catabolic process	2.13E-03
51	GO:0018344: protein geranylgeranylation	2.41E-03
52	GO:0000304: response to singlet oxygen	2.41E-03
53	GO:0018279: protein N-linked glycosylation via asparagine	2.41E-03
54	GO:0006564: L-serine biosynthetic process	2.41E-03
55	GO:0005513: detection of calcium ion	2.41E-03
56	GO:0006097: glyoxylate cycle	2.41E-03
57	GO:0019252: starch biosynthetic process	2.89E-03
58	GO:0010256: endomembrane system organization	2.98E-03
59	GO:0047484: regulation of response to osmotic stress	2.98E-03
60	GO:0018258: protein O-linked glycosylation via hydroxyproline	2.98E-03
61	GO:0010405: arabinogalactan protein metabolic process	2.98E-03
62	GO:0000302: response to reactive oxygen species	3.09E-03
63	GO:0030163: protein catabolic process	3.52E-03
64	GO:0042372: phylloquinone biosynthetic process	3.58E-03
65	GO:0006120: mitochondrial electron transport, NADH to ubiquinone	3.58E-03
66	GO:0009612: response to mechanical stimulus	3.58E-03
67	GO:1900056: negative regulation of leaf senescence	4.23E-03
68	GO:1902074: response to salt	4.23E-03
69	GO:0009615: response to virus	4.47E-03
70	GO:0006886: intracellular protein transport	4.54E-03
71	GO:0050832: defense response to fungus	4.88E-03
72	GO:0018401: peptidyl-proline hydroxylation to 4-hydroxy-L-proline	4.90E-03
73	GO:0006875: cellular metal ion homeostasis	4.90E-03
74	GO:0009808: lignin metabolic process	5.62E-03
75	GO:0009817: defense response to fungus, incompatible interaction	5.83E-03
76	GO:0009751: response to salicylic acid	5.83E-03
77	GO:0009408: response to heat	5.96E-03
78	GO:0046685: response to arsenic-containing substance	6.37E-03
79	GO:0009407: toxin catabolic process	6.43E-03
80	GO:0015031: protein transport	6.60E-03
81	GO:0006511: ubiquitin-dependent protein catabolic process	6.63E-03
82	GO:0010205: photoinhibition	7.15E-03
83	GO:0043067: regulation of programmed cell death	7.15E-03
84	GO:0048354: mucilage biosynthetic process involved in seed coat development	7.15E-03
85	GO:0007064: mitotic sister chromatid cohesion	7.97E-03
86	GO:0006032: chitin catabolic process	7.97E-03
87	GO:0009688: abscisic acid biosynthetic process	7.97E-03
88	GO:0000272: polysaccharide catabolic process	8.82E-03
89	GO:0006790: sulfur compound metabolic process	9.70E-03
90	GO:0002213: defense response to insect	9.70E-03
91	GO:0015706: nitrate transport	9.70E-03
92	GO:0006890: retrograde vesicle-mediated transport, Golgi to ER	9.70E-03
93	GO:0010075: regulation of meristem growth	1.06E-02
94	GO:0009636: response to toxic substance	1.07E-02
95	GO:0009934: regulation of meristem structural organization	1.16E-02
96	GO:0009846: pollen germination	1.20E-02
97	GO:0010167: response to nitrate	1.25E-02
98	GO:0046688: response to copper ion	1.25E-02
99	GO:0046854: phosphatidylinositol phosphorylation	1.25E-02
100	GO:0006486: protein glycosylation	1.29E-02
101	GO:0080147: root hair cell development	1.46E-02
102	GO:0006487: protein N-linked glycosylation	1.46E-02
103	GO:0006096: glycolytic process	1.53E-02
104	GO:0006825: copper ion transport	1.56E-02
105	GO:0016998: cell wall macromolecule catabolic process	1.67E-02
106	GO:0009620: response to fungus	1.68E-02
107	GO:0030433: ubiquitin-dependent ERAD pathway	1.78E-02
108	GO:0071456: cellular response to hypoxia	1.78E-02
109	GO:0019748: secondary metabolic process	1.78E-02
110	GO:0009411: response to UV	1.89E-02
111	GO:0009625: response to insect	1.89E-02
112	GO:0006468: protein phosphorylation	1.95E-02
113	GO:0010584: pollen exine formation	2.01E-02
114	GO:0006952: defense response	2.06E-02
115	GO:0042147: retrograde transport, endosome to Golgi	2.13E-02
116	GO:0008033: tRNA processing	2.25E-02
117	GO:0010501: RNA secondary structure unwinding	2.25E-02
118	GO:0000413: protein peptidyl-prolyl isomerization	2.25E-02
119	GO:0010118: stomatal movement	2.25E-02
120	GO:0032259: methylation	2.27E-02
121	GO:0006520: cellular amino acid metabolic process	2.37E-02
122	GO:0010197: polar nucleus fusion	2.37E-02
123	GO:0048868: pollen tube development	2.37E-02
124	GO:0009851: auxin biosynthetic process	2.63E-02
125	GO:0080156: mitochondrial mRNA modification	2.76E-02
126	GO:0002229: defense response to oomycetes	2.76E-02
127	GO:0010193: response to ozone	2.76E-02
128	GO:0006891: intra-Golgi vesicle-mediated transport	2.76E-02
129	GO:0006635: fatty acid beta-oxidation	2.76E-02
130	GO:0007264: small GTPase mediated signal transduction	2.89E-02
131	GO:0009567: double fertilization forming a zygote and endosperm	3.16E-02
132	GO:0010252: auxin homeostasis	3.16E-02
133	GO:0006464: cellular protein modification process	3.16E-02
134	GO:0010150: leaf senescence	3.18E-02
135	GO:0042128: nitrate assimilation	3.87E-02
136	GO:0016311: dephosphorylation	4.17E-02
137	GO:0008219: cell death	4.33E-02
138	GO:0009735: response to cytokinin	4.37E-02
139	GO:0048527: lateral root development	4.79E-02
140	GO:0010043: response to zinc ion	4.79E-02
141	GO:0007568: aging	4.79E-02

Rank	GO Term	Adjusted P value
1	GO:0008117: sphinganine-1-phosphate aldolase activity	0.00E+00
2	GO:0047720: indoleacetaldoxime dehydratase activity	0.00E+00
3	GO:0050220: prostaglandin-E synthase activity	0.00E+00
4	GO:0010298: dihydrocamalexic acid decarboxylase activity	0.00E+00
5	GO:0005092: GDP-dissociation inhibitor activity	0.00E+00
6	GO:0016312: inositol bisphosphate phosphatase activity	0.00E+00
7	GO:0003756: protein disulfide isomerase activity	4.17E-09
8	GO:0004775: succinate-CoA ligase (ADP-forming) activity	3.53E-06
9	GO:0004776: succinate-CoA ligase (GDP-forming) activity	3.53E-06
10	GO:0004298: threonine-type endopeptidase activity	4.79E-06
11	GO:0005509: calcium ion binding	1.11E-05
12	GO:0004449: isocitrate dehydrogenase (NAD+) activity	2.85E-05
13	GO:0004579: dolichyl-diphosphooligosaccharide-protein glycotransferase activity	8.14E-05
14	GO:0005507: copper ion binding	1.37E-04
15	GO:0033743: peptide-methionine (R)-S-oxide reductase activity	1.62E-04
16	GO:0004747: ribokinase activity	1.62E-04
17	GO:0008320: protein transmembrane transporter activity	2.13E-04
18	GO:0008865: fructokinase activity	2.69E-04
19	GO:0008809: carnitine racemase activity	2.77E-04
20	GO:0004425: indole-3-glycerol-phosphate synthase activity	2.77E-04
21	GO:0004048: anthranilate phosphoribosyltransferase activity	2.77E-04
22	GO:0048037: cofactor binding	2.77E-04
23	GO:0008909: isochorismate synthase activity	2.77E-04
24	GO:0004149: dihydrolipoyllysine-residue succinyltransferase activity	2.77E-04
25	GO:0004648: O-phospho-L-serine:2-oxoglutarate aminotransferase activity	2.77E-04
26	GO:0004743: pyruvate kinase activity	4.74E-04
27	GO:0030955: potassium ion binding	4.74E-04
28	GO:0051082: unfolded protein binding	5.34E-04
29	GO:0015035: protein disulfide oxidoreductase activity	5.59E-04
30	GO:0003994: aconitate hydratase activity	6.09E-04
31	GO:0015036: disulfide oxidoreductase activity	6.09E-04
32	GO:0008233: peptidase activity	6.95E-04
33	GO:0016301: kinase activity	7.29E-04
34	GO:0016531: copper chaperone activity	9.88E-04
35	GO:0004148: dihydrolipoyl dehydrogenase activity	9.88E-04
36	GO:0004441: inositol-1,4-bisphosphate 1-phosphatase activity	9.88E-04
37	GO:0000030: mannosyltransferase activity	9.88E-04
38	GO:0005093: Rab GDP-dissociation inhibitor activity	9.88E-04
39	GO:0051539: 4 iron, 4 sulfur cluster binding	1.19E-03
40	GO:0004364: glutathione transferase activity	1.32E-03
41	GO:0010178: IAA-amino acid conjugate hydrolase activity	1.41E-03
42	GO:0004165: dodecenoyl-CoA delta-isomerase activity	1.41E-03
43	GO:0009055: electron carrier activity	1.60E-03
44	GO:0004031: aldehyde oxidase activity	1.89E-03
45	GO:0050302: indole-3-acetaldehyde oxidase activity	1.89E-03
46	GO:0004576: oligosaccharyl transferase activity	1.89E-03
47	GO:0010279: indole-3-acetic acid amido synthetase activity	1.89E-03
48	GO:0010294: abscisic acid glucosyltransferase activity	2.41E-03
49	GO:0017137: Rab GTPase binding	2.41E-03
50	GO:0005496: steroid binding	2.41E-03
51	GO:0005471: ATP:ADP antiporter activity	2.41E-03
52	GO:1990714: hydroxyproline O-galactosyltransferase activity	2.98E-03
53	GO:0008200: ion channel inhibitor activity	2.98E-03
54	GO:0051920: peroxiredoxin activity	3.58E-03
55	GO:0008441: 3'(2'),5'-bisphosphate nucleotidase activity	3.58E-03
56	GO:0004656: procollagen-proline 4-dioxygenase activity	3.58E-03
57	GO:0008113: peptide-methionine (S)-S-oxide reductase activity	3.58E-03
58	GO:0008237: metallopeptidase activity	3.98E-03
59	GO:0005506: iron ion binding	3.99E-03
60	GO:0016831: carboxy-lyase activity	4.23E-03
61	GO:0005524: ATP binding	4.59E-03
62	GO:0016709: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, NAD(P)H as one donor, and incorporation of one atom of oxygen	4.87E-03
63	GO:0004033: aldo-keto reductase (NADP) activity	4.90E-03
64	GO:0016209: antioxidant activity	4.90E-03
65	GO:0008757: S-adenosylmethionine-dependent methyltransferase activity	5.55E-03
66	GO:0071949: FAD binding	6.37E-03
67	GO:0004674: protein serine/threonine kinase activity	6.41E-03
68	GO:0016614: oxidoreductase activity, acting on CH-OH group of donors	6.75E-03
69	GO:0016491: oxidoreductase activity	7.07E-03
70	GO:0045309: protein phosphorylated amino acid binding	7.15E-03
71	GO:0015112: nitrate transmembrane transporter activity	7.15E-03
72	GO:0016706: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors	7.40E-03
73	GO:0004568: chitinase activity	7.97E-03
74	GO:0008171: O-methyltransferase activity	7.97E-03
75	GO:0004129: cytochrome-c oxidase activity	8.82E-03
76	GO:0008794: arsenate reductase (glutaredoxin) activity	8.82E-03
77	GO:0019904: protein domain specific binding	8.82E-03
78	GO:0008559: xenobiotic-transporting ATPase activity	8.82E-03
79	GO:0008378: galactosyltransferase activity	9.70E-03
80	GO:0004022: alcohol dehydrogenase (NAD) activity	1.06E-02
81	GO:0000287: magnesium ion binding	1.09E-02
82	GO:0008061: chitin binding	1.25E-02
83	GO:0004190: aspartic-type endopeptidase activity	1.25E-02
84	GO:0004867: serine-type endopeptidase inhibitor activity	1.25E-02
85	GO:0050660: flavin adenine dinucleotide binding	1.34E-02
86	GO:0031418: L-ascorbic acid binding	1.46E-02
87	GO:0004497: monooxygenase activity	1.47E-02
88	GO:0080044: quercetin 7-O-glucosyltransferase activity	1.68E-02
89	GO:0080043: quercetin 3-O-glucosyltransferase activity	1.68E-02
90	GO:0016758: transferase activity, transferring hexosyl groups	2.25E-02
91	GO:0008080: N-acetyltransferase activity	2.37E-02
92	GO:0019825: oxygen binding	2.41E-02
93	GO:0016853: isomerase activity	2.50E-02
94	GO:0010181: FMN binding	2.50E-02
95	GO:0048038: quinone binding	2.76E-02
96	GO:0008137: NADH dehydrogenase (ubiquinone) activity	2.76E-02
97	GO:0020037: heme binding	2.88E-02
98	GO:0016671: oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor	3.02E-02
99	GO:0008194: UDP-glycosyltransferase activity	3.56E-02
100	GO:0051213: dioxygenase activity	3.58E-02
101	GO:0004004: ATP-dependent RNA helicase activity	4.02E-02
102	GO:0030247: polysaccharide binding	4.02E-02
103	GO:0042802: identical protein binding	4.04E-02
104	GO:0015450: P-P-bond-hydrolysis-driven protein transmembrane transporter activity	4.33E-02
105	GO:0015238: drug transmembrane transporter activity	4.48E-02
106	GO:0005096: GTPase activator activity	4.48E-02
107	GO:0008168: methyltransferase activity	4.72E-02
108	GO:0050897: cobalt ion binding	4.79E-02
109	GO:0030145: manganese ion binding	4.79E-02

Rank	GO Term	Adjusted P value
1	GO:0019034: viral replication complex	0.00E+00
2	GO:0000327: lytic vacuole within protein storage vacuole	0.00E+00
3	GO:0005783: endoplasmic reticulum	2.12E-22
4	GO:0005788: endoplasmic reticulum lumen	1.27E-14
5	GO:0030134: ER to Golgi transport vesicle	3.53E-06
6	GO:0005839: proteasome core complex	4.79E-06
7	GO:0000502: proteasome complex	3.08E-05
8	GO:0005829: cytosol	3.91E-05
9	GO:0008250: oligosaccharyltransferase complex	8.14E-05
10	GO:0005886: plasma membrane	1.43E-04
11	GO:0016020: membrane	2.73E-04
12	GO:0045252: oxoglutarate dehydrogenase complex	2.77E-04
13	GO:0005774: vacuolar membrane	3.33E-04
14	GO:0031314: extrinsic component of mitochondrial inner membrane	6.09E-04
15	GO:0005794: Golgi apparatus	9.29E-04
16	GO:0005789: endoplasmic reticulum membrane	1.00E-03
17	GO:0005968: Rab-protein geranylgeranyltransferase complex	1.41E-03
18	GO:0016021: integral component of membrane	1.71E-03
19	GO:0030660: Golgi-associated vesicle membrane	1.89E-03
20	GO:0071556: integral component of lumenal side of endoplasmic reticulum membrane	1.89E-03
21	GO:0005746: mitochondrial respiratory chain	2.41E-03
22	GO:0016592: mediator complex	3.31E-03
23	GO:0005801: cis-Golgi network	3.58E-03
24	GO:0071458: integral component of cytoplasmic side of endoplasmic reticulum membrane	4.90E-03
25	GO:0019773: proteasome core complex, alpha-subunit complex	5.62E-03
26	GO:0000326: protein storage vacuole	5.62E-03
27	GO:0009505: plant-type cell wall	6.42E-03
28	GO:0000325: plant-type vacuole	6.75E-03
29	GO:0005740: mitochondrial envelope	7.97E-03
30	GO:0005765: lysosomal membrane	8.82E-03
31	GO:0008541: proteasome regulatory particle, lid subcomplex	8.82E-03
32	GO:0043234: protein complex	1.35E-02
33	GO:0005758: mitochondrial intermembrane space	1.46E-02
34	GO:0005747: mitochondrial respiratory chain complex I	1.58E-02
35	GO:0005741: mitochondrial outer membrane	1.67E-02
36	GO:0005773: vacuole	1.86E-02
37	GO:0009536: plastid	1.88E-02
38	GO:0005743: mitochondrial inner membrane	2.19E-02
39	GO:0043231: intracellular membrane-bounded organelle	2.71E-02
40	GO:0005759: mitochondrial matrix	2.90E-02
41	GO:0032580: Golgi cisterna membrane	3.16E-02
42	GO:0005739: mitochondrion	3.58E-02
43	GO:0048046: apoplast	4.80E-02