Gene type: Transcription factor Metabolic gene Others DE type: Up Down Slightly_up Slightly_down Mixeded Others

GO Enrichment Analysis of Co-expressed Genes with

AT3G50910

GO-BP
GO-MF
GO-CC
RankGO TermAdjusted P value
1GO:0043462: regulation of ATPase activity0.00E+00
2GO:0009991: response to extracellular stimulus0.00E+00
3GO:0080169: cellular response to boron-containing substance deprivation0.00E+00
4GO:0032780: negative regulation of ATPase activity0.00E+00
5GO:0036258: multivesicular body assembly0.00E+00
6GO:0048227: plasma membrane to endosome transport0.00E+00
7GO:0007205: protein kinase C-activating G-protein coupled receptor signaling pathway1.57E-04
8GO:0046167: glycerol-3-phosphate biosynthetic process2.27E-04
9GO:0006805: xenobiotic metabolic process2.27E-04
10GO:0000303: response to superoxide2.27E-04
11GO:0080173: male-female gamete recognition during double fertilization2.27E-04
12GO:0010726: positive regulation of hydrogen peroxide metabolic process2.27E-04
13GO:0009962: regulation of flavonoid biosynthetic process2.27E-04
14GO:0010265: SCF complex assembly2.27E-04
15GO:0034214: protein hexamerization2.27E-04
16GO:0010201: response to continuous far red light stimulus by the high-irradiance response system2.27E-04
17GO:0006098: pentose-phosphate shunt3.00E-04
18GO:0016310: phosphorylation5.01E-04
19GO:0031648: protein destabilization5.05E-04
20GO:0071395: cellular response to jasmonic acid stimulus5.05E-04
21GO:0006641: triglyceride metabolic process5.05E-04
22GO:0019521: D-gluconate metabolic process5.05E-04
23GO:0019374: galactolipid metabolic process5.05E-04
24GO:0030010: establishment of cell polarity5.05E-04
25GO:1902000: homogentisate catabolic process5.05E-04
26GO:0019441: tryptophan catabolic process to kynurenine5.05E-04
27GO:0097054: L-glutamate biosynthetic process5.05E-04
28GO:0046740: transport of virus in host, cell to cell5.05E-04
29GO:0006468: protein phosphorylation5.98E-04
30GO:0010043: response to zinc ion6.34E-04
31GO:0009867: jasmonic acid mediated signaling pathway7.12E-04
32GO:0009072: aromatic amino acid family metabolic process8.21E-04
33GO:0048586: regulation of long-day photoperiodism, flowering8.21E-04
34GO:0019563: glycerol catabolic process8.21E-04
35GO:0010359: regulation of anion channel activity8.21E-04
36GO:0007188: adenylate cyclase-modulating G-protein coupled receptor signaling pathway8.21E-04
37GO:0006556: S-adenosylmethionine biosynthetic process8.21E-04
38GO:0015031: protein transport1.10E-03
39GO:0010071: root meristem specification1.17E-03
40GO:0070301: cellular response to hydrogen peroxide1.17E-03
41GO:0006537: glutamate biosynthetic process1.17E-03
42GO:0006072: glycerol-3-phosphate metabolic process1.17E-03
43GO:0006809: nitric oxide biosynthetic process1.17E-03
44GO:0009399: nitrogen fixation1.17E-03
45GO:0070676: intralumenal vesicle formation1.17E-03
46GO:0001676: long-chain fatty acid metabolic process1.17E-03
47GO:0031348: negative regulation of defense response1.27E-03
48GO:0051603: proteolysis involved in cellular protein catabolic process1.48E-03
49GO:0009306: protein secretion1.50E-03
50GO:0019676: ammonia assimilation cycle1.56E-03
51GO:0010363: regulation of plant-type hypersensitive response1.56E-03
52GO:0042991: transcription factor import into nucleus1.56E-03
53GO:0031087: deadenylation-independent decapping of nuclear-transcribed mRNA1.56E-03
54GO:0010188: response to microbial phytotoxin1.56E-03
55GO:0006878: cellular copper ion homeostasis1.56E-03
56GO:0006542: glutamine biosynthetic process1.56E-03
57GO:0046686: response to cadmium ion1.72E-03
58GO:0046323: glucose import1.89E-03
59GO:0006891: intra-Golgi vesicle-mediated transport2.33E-03
60GO:0010193: response to ozone2.33E-03
61GO:0006979: response to oxidative stress2.36E-03
62GO:0006751: glutathione catabolic process2.45E-03
63GO:0070814: hydrogen sulfide biosynthetic process2.45E-03
64GO:0048317: seed morphogenesis2.45E-03
65GO:1902456: regulation of stomatal opening2.45E-03
66GO:0009117: nucleotide metabolic process2.45E-03
67GO:0006574: valine catabolic process2.45E-03
68GO:0035435: phosphate ion transmembrane transport2.45E-03
69GO:0045899: positive regulation of RNA polymerase II transcriptional preinitiation complex assembly2.45E-03
70GO:0010942: positive regulation of cell death2.45E-03
71GO:0006464: cellular protein modification process2.82E-03
72GO:0006886: intracellular protein transport2.92E-03
73GO:0010555: response to mannitol2.94E-03
74GO:2000067: regulation of root morphogenesis2.94E-03
75GO:0080060: integument development2.94E-03
76GO:0009094: L-phenylalanine biosynthetic process2.94E-03
77GO:0006904: vesicle docking involved in exocytosis2.99E-03
78GO:0009610: response to symbiotic fungus3.47E-03
79GO:0045995: regulation of embryonic development3.47E-03
80GO:0006955: immune response3.47E-03
81GO:0071446: cellular response to salicylic acid stimulus3.47E-03
82GO:0015937: coenzyme A biosynthetic process3.47E-03
83GO:0009816: defense response to bacterium, incompatible interaction3.55E-03
84GO:0006511: ubiquitin-dependent protein catabolic process3.99E-03
85GO:0006102: isocitrate metabolic process4.02E-03
86GO:0006644: phospholipid metabolic process4.02E-03
87GO:0010078: maintenance of root meristem identity4.02E-03
88GO:0010492: maintenance of shoot apical meristem identity4.02E-03
89GO:0009880: embryonic pattern specification4.60E-03
90GO:0006367: transcription initiation from RNA polymerase II promoter4.60E-03
91GO:0007186: G-protein coupled receptor signaling pathway4.60E-03
92GO:0030968: endoplasmic reticulum unfolded protein response4.60E-03
93GO:0048527: lateral root development5.06E-03
94GO:0007338: single fertilization5.22E-03
95GO:0046685: response to arsenic-containing substance5.22E-03
96GO:0009617: response to bacterium5.54E-03
97GO:0009873: ethylene-activated signaling pathway5.66E-03
98GO:0042761: very long-chain fatty acid biosynthetic process5.85E-03
99GO:2000280: regulation of root development5.85E-03
100GO:0016571: histone methylation5.85E-03
101GO:0048268: clathrin coat assembly5.85E-03
102GO:0008202: steroid metabolic process5.85E-03
103GO:0010629: negative regulation of gene expression6.51E-03
104GO:0000103: sulfate assimilation6.51E-03
105GO:0019538: protein metabolic process6.51E-03
106GO:0043069: negative regulation of programmed cell death6.51E-03
107GO:0006631: fatty acid metabolic process6.58E-03
108GO:0051707: response to other organism7.14E-03
109GO:0030148: sphingolipid biosynthetic process7.20E-03
110GO:0072593: reactive oxygen species metabolic process7.20E-03
111GO:0015770: sucrose transport7.20E-03
112GO:0009750: response to fructose7.20E-03
113GO:0048229: gametophyte development7.20E-03
114GO:0012501: programmed cell death7.92E-03
115GO:0006855: drug transmembrane transport8.34E-03
116GO:0010102: lateral root morphogenesis8.66E-03
117GO:0007049: cell cycle8.87E-03
118GO:0009651: response to salt stress9.08E-03
119GO:0009723: response to ethylene9.28E-03
120GO:0009887: animal organ morphogenesis9.42E-03
121GO:0007034: vacuolar transport9.42E-03
122GO:0002237: response to molecule of bacterial origin9.42E-03
123GO:0009736: cytokinin-activated signaling pathway9.64E-03
124GO:0009809: lignin biosynthetic process9.64E-03
125GO:0010053: root epidermal cell differentiation1.02E-02
126GO:0042343: indole glucosinolate metabolic process1.02E-02
127GO:0006952: defense response1.06E-02
128GO:0034976: response to endoplasmic reticulum stress1.10E-02
129GO:0046777: protein autophosphorylation1.11E-02
130GO:2000377: regulation of reactive oxygen species metabolic process1.19E-02
131GO:0016575: histone deacetylation1.27E-02
132GO:0045892: negative regulation of transcription, DNA-templated1.30E-02
133GO:0098542: defense response to other organism1.36E-02
134GO:0061077: chaperone-mediated protein folding1.36E-02
135GO:0010017: red or far-red light signaling pathway1.45E-02
136GO:0030433: ubiquitin-dependent ERAD pathway1.45E-02
137GO:0035428: hexose transmembrane transport1.45E-02
138GO:0006730: one-carbon metabolic process1.45E-02
139GO:0080092: regulation of pollen tube growth1.45E-02
140GO:0009693: ethylene biosynthetic process1.54E-02
141GO:0010087: phloem or xylem histogenesis1.83E-02
142GO:0010118: stomatal movement1.83E-02
143GO:0042631: cellular response to water deprivation1.83E-02
144GO:0080022: primary root development1.83E-02
145GO:0009845: seed germination1.87E-02
146GO:0055114: oxidation-reduction process1.91E-02
147GO:0071472: cellular response to salt stress1.93E-02
148GO:0010154: fruit development1.93E-02
149GO:0010197: polar nucleus fusion1.93E-02
150GO:0009790: embryo development2.02E-02
151GO:0042752: regulation of circadian rhythm2.03E-02
152GO:0048544: recognition of pollen2.03E-02
153GO:0055072: iron ion homeostasis2.14E-02
154GO:0010183: pollen tube guidance2.14E-02
155GO:0048825: cotyledon development2.14E-02
156GO:0009749: response to glucose2.14E-02
157GO:0048510: regulation of timing of transition from vegetative to reproductive phase2.24E-02
158GO:0071554: cell wall organization or biogenesis2.24E-02
159GO:0002229: defense response to oomycetes2.24E-02
160GO:0007264: small GTPase mediated signal transduction2.35E-02
161GO:0010583: response to cyclopentenone2.35E-02
162GO:0016032: viral process2.35E-02
163GO:0071281: cellular response to iron ion2.46E-02
164GO:0007275: multicellular organism development2.55E-02
165GO:0009734: auxin-activated signaling pathway2.56E-02
166GO:0009567: double fertilization forming a zygote and endosperm2.57E-02
167GO:0006470: protein dephosphorylation2.73E-02
168GO:0000910: cytokinesis2.80E-02
169GO:0010468: regulation of gene expression2.85E-02
170GO:0009911: positive regulation of flower development2.91E-02
171GO:0009788: negative regulation of abscisic acid-activated signaling pathway3.03E-02
172GO:0042128: nitrate assimilation3.15E-02
173GO:0048573: photoperiodism, flowering3.27E-02
174GO:0006888: ER to Golgi vesicle-mediated transport3.27E-02
175GO:0006950: response to stress3.27E-02
176GO:0009738: abscisic acid-activated signaling pathway3.28E-02
177GO:0009817: defense response to fungus, incompatible interaction3.52E-02
178GO:0035556: intracellular signal transduction3.65E-02
179GO:0010311: lateral root formation3.65E-02
180GO:0006499: N-terminal protein myristoylation3.77E-02
181GO:0009407: toxin catabolic process3.77E-02
182GO:0007568: aging3.90E-02
183GO:0009910: negative regulation of flower development3.90E-02
184GO:0010119: regulation of stomatal movement3.90E-02
185GO:0006970: response to osmotic stress3.96E-02
186GO:0009860: pollen tube growth3.96E-02
187GO:0006099: tricarboxylic acid cycle4.30E-02
188GO:0048366: leaf development4.33E-02
189GO:0080167: response to karrikin4.56E-02
190GO:0006897: endocytosis4.71E-02
191GO:0007169: transmembrane receptor protein tyrosine kinase signaling pathway4.71E-02
192GO:0010200: response to chitin4.71E-02
193GO:0042542: response to hydrogen peroxide4.85E-02
194GO:0044550: secondary metabolite biosynthetic process4.94E-02
195GO:0009744: response to sucrose4.98E-02
RankGO TermAdjusted P value
1GO:0005365: myo-inositol transmembrane transporter activity0.00E+00
2GO:0016034: maleylacetoacetate isomerase activity0.00E+00
3GO:0015576: sorbitol transmembrane transporter activity0.00E+00
4GO:0004622: lysophospholipase activity0.00E+00
5GO:0015930: glutamate synthase activity0.00E+00
6GO:0033550: MAP kinase tyrosine phosphatase activity0.00E+00
7GO:0015591: D-ribose transmembrane transporter activity0.00E+00
8GO:0015148: D-xylose transmembrane transporter activity0.00E+00
9GO:0004370: glycerol kinase activity0.00E+00
10GO:0015575: mannitol transmembrane transporter activity0.00E+00
11GO:0003846: 2-acylglycerol O-acyltransferase activity0.00E+00
12GO:0042030: ATPase inhibitor activity0.00E+00
13GO:0005524: ATP binding1.37E-08
14GO:0004713: protein tyrosine kinase activity1.44E-05
15GO:0005515: protein binding2.88E-05
16GO:0015145: monosaccharide transmembrane transporter activity5.85E-05
17GO:0008565: protein transporter activity8.85E-05
18GO:0008113: peptide-methionine (S)-S-oxide reductase activity1.19E-04
19GO:0004616: phosphogluconate dehydrogenase (decarboxylating) activity1.19E-04
20GO:0102391: decanoate--CoA ligase activity1.19E-04
21GO:0004143: diacylglycerol kinase activity1.57E-04
22GO:0004467: long-chain fatty acid-CoA ligase activity1.57E-04
23GO:0090430: caffeoyl-CoA: alcohol caffeoyl transferase activity2.27E-04
24GO:0015168: glycerol transmembrane transporter activity2.27E-04
25GO:0016041: glutamate synthase (ferredoxin) activity2.27E-04
26GO:0003951: NAD+ kinase activity2.48E-04
27GO:0004674: protein serine/threonine kinase activity3.99E-04
28GO:0004594: pantothenate kinase activity5.05E-04
29GO:0045140: inositol phosphoceramide synthase activity5.05E-04
30GO:0032934: sterol binding5.05E-04
31GO:0004061: arylformamidase activity5.05E-04
32GO:0019200: carbohydrate kinase activity5.05E-04
33GO:0004450: isocitrate dehydrogenase (NADP+) activity5.05E-04
34GO:0004385: guanylate kinase activity5.05E-04
35GO:0008517: folic acid transporter activity5.05E-04
36GO:0004566: beta-glucuronidase activity5.05E-04
37GO:0004478: methionine adenosyltransferase activity8.21E-04
38GO:0001664: G-protein coupled receptor binding8.21E-04
39GO:0005093: Rab GDP-dissociation inhibitor activity8.21E-04
40GO:0008442: 3-hydroxyisobutyrate dehydrogenase activity8.21E-04
41GO:0003840: gamma-glutamyltransferase activity8.21E-04
42GO:0036374: glutathione hydrolase activity8.21E-04
43GO:0031683: G-protein beta/gamma-subunit complex binding8.21E-04
44GO:0004781: sulfate adenylyltransferase (ATP) activity8.21E-04
45GO:0016805: dipeptidase activity8.21E-04
46GO:0005354: galactose transmembrane transporter activity1.17E-03
47GO:0016756: glutathione gamma-glutamylcysteinyltransferase activity1.17E-03
48GO:0004298: threonine-type endopeptidase activity1.17E-03
49GO:0016301: kinase activity1.28E-03
50GO:0047769: arogenate dehydratase activity1.56E-03
51GO:0004664: prephenate dehydratase activity1.56E-03
52GO:0004301: epoxide hydrolase activity1.56E-03
53GO:0016887: ATPase activity1.83E-03
54GO:0030276: clathrin binding1.89E-03
55GO:0004356: glutamate-ammonia ligase activity1.99E-03
56GO:0051538: 3 iron, 4 sulfur cluster binding1.99E-03
57GO:0005355: glucose transmembrane transporter activity2.03E-03
58GO:0031593: polyubiquitin binding2.45E-03
59GO:0047714: galactolipase activity2.45E-03
60GO:0036402: proteasome-activating ATPase activity2.45E-03
61GO:0003950: NAD+ ADP-ribosyltransferase activity2.94E-03
62GO:0008506: sucrose:proton symporter activity3.47E-03
63GO:0008235: metalloexopeptidase activity3.47E-03
64GO:0102425: myricetin 3-O-glucosyltransferase activity3.47E-03
65GO:0102360: daphnetin 3-O-glucosyltransferase activity3.47E-03
66GO:0004620: phospholipase activity3.47E-03
67GO:0030246: carbohydrate binding3.92E-03
68GO:0035064: methylated histone binding4.02E-03
69GO:0047893: flavonol 3-O-glucosyltransferase activity4.02E-03
70GO:0052747: sinapyl alcohol dehydrogenase activity4.02E-03
71GO:0004869: cysteine-type endopeptidase inhibitor activity4.02E-03
72GO:0008142: oxysterol binding4.60E-03
73GO:0032041: NAD-dependent histone deacetylase activity (H3-K14 specific)4.60E-03
74GO:0008970: phosphatidylcholine 1-acylhydrolase activity4.60E-03
75GO:0004672: protein kinase activity4.95E-03
76GO:0071949: FAD binding5.22E-03
77GO:0045309: protein phosphorylated amino acid binding5.85E-03
78GO:0047617: acyl-CoA hydrolase activity5.85E-03
79GO:0004712: protein serine/threonine/tyrosine kinase activity6.05E-03
80GO:0005545: 1-phosphatidylinositol binding6.51E-03
81GO:0004177: aminopeptidase activity7.20E-03
82GO:0008559: xenobiotic-transporting ATPase activity7.20E-03
83GO:0019904: protein domain specific binding7.20E-03
84GO:0045551: cinnamyl-alcohol dehydrogenase activity7.92E-03
85GO:0031072: heat shock protein binding8.66E-03
86GO:0051287: NAD binding8.66E-03
87GO:0005315: inorganic phosphate transmembrane transporter activity8.66E-03
88GO:0017025: TBP-class protein binding1.02E-02
89GO:0016787: hydrolase activity1.03E-02
90GO:0004725: protein tyrosine phosphatase activity1.10E-02
91GO:0003954: NADH dehydrogenase activity1.19E-02
92GO:0004407: histone deacetylase activity1.19E-02
93GO:0043130: ubiquitin binding1.19E-02
94GO:0005528: FK506 binding1.19E-02
95GO:0043424: protein histidine kinase binding1.27E-02
96GO:0004871: signal transducer activity1.35E-02
97GO:0042803: protein homodimerization activity1.35E-02
98GO:0035251: UDP-glucosyltransferase activity1.36E-02
99GO:0022891: substrate-specific transmembrane transporter activity1.54E-02
100GO:0003924: GTPase activity1.66E-02
101GO:0047134: protein-disulfide reductase activity1.73E-02
102GO:0001085: RNA polymerase II transcription factor binding1.93E-02
103GO:0004791: thioredoxin-disulfide reductase activity2.03E-02
104GO:0010181: FMN binding2.03E-02
105GO:0015144: carbohydrate transmembrane transporter activity2.07E-02
106GO:0005351: sugar:proton symporter activity2.33E-02
107GO:0004197: cysteine-type endopeptidase activity2.35E-02
108GO:0008194: UDP-glycosyltransferase activity2.67E-02
109GO:0016413: O-acetyltransferase activity2.80E-02
110GO:0016597: amino acid binding2.80E-02
111GO:0009931: calcium-dependent protein serine/threonine kinase activity3.15E-02
112GO:0004683: calmodulin-dependent protein kinase activity3.27E-02
113GO:0004806: triglyceride lipase activity3.27E-02
114GO:0000166: nucleotide binding3.41E-02
115GO:0046982: protein heterodimerization activity3.62E-02
116GO:0015238: drug transmembrane transporter activity3.65E-02
117GO:0005096: GTPase activator activity3.65E-02
118GO:0004222: metalloendopeptidase activity3.77E-02
119GO:0030145: manganese ion binding3.90E-02
120GO:0001228: transcriptional activator activity, RNA polymerase II transcription regulatory region sequence-specific binding3.90E-02
121GO:0016491: oxidoreductase activity3.94E-02
122GO:0008233: peptidase activity4.48E-02
123GO:0004364: glutathione transferase activity4.85E-02
RankGO TermAdjusted P value
1GO:0019822: P4 peroxisome0.00E+00
2GO:0005674: transcription factor TFIIF complex0.00E+00
3GO:0005829: cytosol1.63E-08
4GO:0005886: plasma membrane8.93E-08
5GO:0031304: intrinsic component of mitochondrial inner membrane5.05E-04
6GO:0005795: Golgi stack7.89E-04
7GO:0030139: endocytic vesicle8.21E-04
8GO:0005783: endoplasmic reticulum1.14E-03
9GO:0031461: cullin-RING ubiquitin ligase complex1.17E-03
10GO:0005839: proteasome core complex1.17E-03
11GO:0000502: proteasome complex1.41E-03
12GO:0000813: ESCRT I complex1.99E-03
13GO:0030127: COPII vesicle coat2.45E-03
14GO:0016363: nuclear matrix2.94E-03
15GO:0031597: cytosolic proteasome complex2.94E-03
16GO:0005777: peroxisome2.97E-03
17GO:0009524: phragmoplast3.14E-03
18GO:0000794: condensed nuclear chromosome3.47E-03
19GO:0031595: nuclear proteasome complex3.47E-03
20GO:0005794: Golgi apparatus3.60E-03
21GO:0030131: clathrin adaptor complex4.02E-03
22GO:0030665: clathrin-coated vesicle membrane5.85E-03
23GO:0008540: proteasome regulatory particle, base subcomplex5.85E-03
24GO:0005819: spindle6.05E-03
25GO:0031902: late endosome membrane6.58E-03
26GO:0005765: lysosomal membrane7.20E-03
27GO:0016602: CCAAT-binding factor complex8.66E-03
28GO:0005764: lysosome9.42E-03
29GO:0005773: vacuole9.54E-03
30GO:0005774: vacuolar membrane9.72E-03
31GO:0005635: nuclear envelope1.03E-02
32GO:0005834: heterotrimeric G-protein complex1.22E-02
33GO:0005905: clathrin-coated pit1.36E-02
34GO:0030136: clathrin-coated vesicle1.73E-02
35GO:0019898: extrinsic component of membrane2.14E-02
36GO:0071944: cell periphery2.46E-02
37GO:0000932: P-body2.91E-02
38GO:0005667: transcription factor complex3.15E-02
39GO:0005618: cell wall3.31E-02
40GO:0000151: ubiquitin ligase complex3.52E-02
41GO:0009570: chloroplast stroma3.64E-02
42GO:0000325: plant-type vacuole3.90E-02
43GO:0080008: Cul4-RING E3 ubiquitin ligase complex4.04E-02
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Gene type



Gene DE type