Gene type: Transcription factor Metabolic gene Others DE type: Up Down Slightly_up Slightly_down Mixeded Others

GO Enrichment Analysis of Co-expressed Genes with

AT3G50790

GO-BP
GO-MF
GO-CC
RankGO TermAdjusted P value
1GO:0002184: cytoplasmic translational termination0.00E+00
2GO:1901918: negative regulation of exoribonuclease activity0.00E+00
3GO:0070681: glutaminyl-tRNAGln biosynthesis via transamidation0.00E+00
4GO:0016553: base conversion or substitution editing0.00E+00
5GO:2000121: regulation of removal of superoxide radicals0.00E+00
6GO:0061635: regulation of protein complex stability0.00E+00
7GO:0006428: isoleucyl-tRNA aminoacylation0.00E+00
8GO:0042821: pyridoxal biosynthetic process0.00E+00
9GO:0042820: vitamin B6 catabolic process0.00E+00
10GO:0005996: monosaccharide metabolic process0.00E+00
11GO:0090042: tubulin deacetylation0.00E+00
12GO:0018023: peptidyl-lysine trimethylation0.00E+00
13GO:0006399: tRNA metabolic process0.00E+00
14GO:0034337: RNA folding0.00E+00
15GO:0015979: photosynthesis2.81E-14
16GO:0009773: photosynthetic electron transport in photosystem I1.64E-11
17GO:0006412: translation4.95E-10
18GO:0015995: chlorophyll biosynthetic process4.12E-09
19GO:0032544: plastid translation1.26E-08
20GO:0010206: photosystem II repair2.30E-08
21GO:0042254: ribosome biogenesis3.02E-08
22GO:0009735: response to cytokinin6.06E-06
23GO:0042549: photosystem II stabilization8.62E-06
24GO:0010207: photosystem II assembly1.22E-05
25GO:0030388: fructose 1,6-bisphosphate metabolic process1.28E-05
26GO:0009409: response to cold3.58E-05
27GO:0006000: fructose metabolic process4.29E-05
28GO:0000413: protein peptidyl-prolyl isomerization8.46E-05
29GO:2001141: regulation of RNA biosynthetic process9.12E-05
30GO:0010258: NADH dehydrogenase complex (plastoquinone) assembly9.12E-05
31GO:0045727: positive regulation of translation1.57E-04
32GO:0006546: glycine catabolic process1.57E-04
33GO:0019253: reductive pentose-phosphate cycle2.35E-04
34GO:0045038: protein import into chloroplast thylakoid membrane2.40E-04
35GO:0010027: thylakoid membrane organization2.72E-04
36GO:0018298: protein-chromophore linkage4.20E-04
37GO:0010019: chloroplast-nucleus signaling pathway4.50E-04
38GO:0006747: FAD biosynthetic process5.40E-04
39GO:0071588: hydrogen peroxide mediated signaling pathway5.40E-04
40GO:0010729: positive regulation of hydrogen peroxide biosynthetic process5.40E-04
41GO:0000476: maturation of 4.5S rRNA5.40E-04
42GO:0009443: pyridoxal 5'-phosphate salvage5.40E-04
43GO:0000967: rRNA 5'-end processing5.40E-04
44GO:0043489: RNA stabilization5.40E-04
45GO:1904966: positive regulation of vitamin E biosynthetic process5.40E-04
46GO:0043266: regulation of potassium ion transport5.40E-04
47GO:0010480: microsporocyte differentiation5.40E-04
48GO:0000481: maturation of 5S rRNA5.40E-04
49GO:1904964: positive regulation of phytol biosynthetic process5.40E-04
50GO:0071461: cellular response to redox state5.40E-04
51GO:2000021: regulation of ion homeostasis5.40E-04
52GO:1902458: positive regulation of stomatal opening5.40E-04
53GO:0010196: nonphotochemical quenching5.77E-04
54GO:0009658: chloroplast organization7.21E-04
55GO:0008152: metabolic process8.43E-04
56GO:0006002: fructose 6-phosphate metabolic process8.74E-04
57GO:0071482: cellular response to light stimulus8.74E-04
58GO:0009657: plastid organization8.74E-04
59GO:0010114: response to red light8.98E-04
60GO:0055114: oxidation-reduction process9.40E-04
61GO:0006521: regulation of cellular amino acid metabolic process1.16E-03
62GO:0034470: ncRNA processing1.16E-03
63GO:0010275: NAD(P)H dehydrogenase complex assembly1.16E-03
64GO:0080005: photosystem stoichiometry adjustment1.16E-03
65GO:1900871: chloroplast mRNA modification1.16E-03
66GO:1902326: positive regulation of chlorophyll biosynthetic process1.16E-03
67GO:0018026: peptidyl-lysine monomethylation1.16E-03
68GO:0034755: iron ion transmembrane transport1.16E-03
69GO:1903426: regulation of reactive oxygen species biosynthetic process1.16E-03
70GO:0010205: photoinhibition1.23E-03
71GO:0006782: protoporphyrinogen IX biosynthetic process1.44E-03
72GO:0006810: transport1.47E-03
73GO:0019684: photosynthesis, light reaction1.66E-03
74GO:0006352: DNA-templated transcription, initiation1.66E-03
75GO:0018119: peptidyl-cysteine S-nitrosylation1.66E-03
76GO:0090391: granum assembly1.91E-03
77GO:0006518: peptide metabolic process1.91E-03
78GO:0006013: mannose metabolic process1.91E-03
79GO:0045493: xylan catabolic process1.91E-03
80GO:2001295: malonyl-CoA biosynthetic process1.91E-03
81GO:0006094: gluconeogenesis2.17E-03
82GO:0009767: photosynthetic electron transport chain2.17E-03
83GO:0005986: sucrose biosynthetic process2.17E-03
84GO:0032259: methylation2.20E-03
85GO:0051513: regulation of monopolar cell growth2.76E-03
86GO:0071484: cellular response to light intensity2.76E-03
87GO:0009226: nucleotide-sugar biosynthetic process2.76E-03
88GO:0006424: glutamyl-tRNA aminoacylation2.76E-03
89GO:0043433: negative regulation of sequence-specific DNA binding transcription factor activity2.76E-03
90GO:0016556: mRNA modification2.76E-03
91GO:0006636: unsaturated fatty acid biosynthetic process3.06E-03
92GO:0019464: glycine decarboxylation via glycine cleavage system3.72E-03
93GO:2000122: negative regulation of stomatal complex development3.72E-03
94GO:0015994: chlorophyll metabolic process3.72E-03
95GO:0010037: response to carbon dioxide3.72E-03
96GO:0015976: carbon utilization3.72E-03
97GO:0009768: photosynthesis, light harvesting in photosystem I3.75E-03
98GO:0042742: defense response to bacterium4.06E-03
99GO:0061077: chaperone-mediated protein folding4.13E-03
100GO:0009247: glycolipid biosynthetic process4.78E-03
101GO:0034052: positive regulation of plant-type hypersensitive response4.78E-03
102GO:0032543: mitochondrial translation4.78E-03
103GO:0010236: plastoquinone biosynthetic process4.78E-03
104GO:0006461: protein complex assembly4.78E-03
105GO:0009644: response to high light intensity5.48E-03
106GO:0045454: cell redox homeostasis5.71E-03
107GO:0010256: endomembrane system organization5.92E-03
108GO:0000470: maturation of LSU-rRNA5.92E-03
109GO:0006655: phosphatidylglycerol biosynthetic process5.92E-03
110GO:0010190: cytochrome b6f complex assembly5.92E-03
111GO:0006086: acetyl-CoA biosynthetic process from pyruvate5.92E-03
112GO:0032973: amino acid export5.92E-03
113GO:0000741: karyogamy5.92E-03
114GO:0000462: maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)7.16E-03
115GO:0006458: 'de novo' protein folding7.16E-03
116GO:0042026: protein refolding7.16E-03
117GO:1901259: chloroplast rRNA processing7.16E-03
118GO:0010189: vitamin E biosynthetic process7.16E-03
119GO:0009854: oxidative photosynthetic carbon pathway7.16E-03
120GO:0010555: response to mannitol7.16E-03
121GO:0006364: rRNA processing7.26E-03
122GO:0000302: response to reactive oxygen species8.41E-03
123GO:0009772: photosynthetic electron transport in photosystem II8.47E-03
124GO:0043090: amino acid import8.47E-03
125GO:0048437: floral organ development8.47E-03
126GO:0009645: response to low light intensity stimulus8.47E-03
127GO:0006400: tRNA modification8.47E-03
128GO:0048564: photosystem I assembly9.87E-03
129GO:0030091: protein repair9.87E-03
130GO:0009819: drought recovery9.87E-03
131GO:0009642: response to light intensity9.87E-03
132GO:0009850: auxin metabolic process9.87E-03
133GO:0043068: positive regulation of programmed cell death9.87E-03
134GO:0019375: galactolipid biosynthetic process9.87E-03
135GO:0032508: DNA duplex unwinding9.87E-03
136GO:2000070: regulation of response to water deprivation9.87E-03
137GO:0010492: maintenance of shoot apical meristem identity9.87E-03
138GO:0009231: riboflavin biosynthetic process9.87E-03
139GO:0017004: cytochrome complex assembly1.13E-02
140GO:0006457: protein folding1.23E-02
141GO:0009051: pentose-phosphate shunt, oxidative branch1.29E-02
142GO:0080144: amino acid homeostasis1.29E-02
143GO:0048507: meristem development1.29E-02
144GO:0006783: heme biosynthetic process1.29E-02
145GO:0009638: phototropism1.45E-02
146GO:0006779: porphyrin-containing compound biosynthetic process1.45E-02
147GO:0009817: defense response to fungus, incompatible interaction1.60E-02
148GO:0010218: response to far red light1.77E-02
149GO:0042744: hydrogen peroxide catabolic process1.79E-02
150GO:0009089: lysine biosynthetic process via diaminopimelate1.80E-02
151GO:0043085: positive regulation of catalytic activity1.80E-02
152GO:0006879: cellular iron ion homeostasis1.80E-02
153GO:0000272: polysaccharide catabolic process1.80E-02
154GO:0048229: gametophyte development1.80E-02
155GO:0009790: embryo development1.85E-02
156GO:0009631: cold acclimation1.85E-02
157GO:0016024: CDP-diacylglycerol biosynthetic process1.98E-02
158GO:0006633: fatty acid biosynthetic process2.03E-02
159GO:0009637: response to blue light2.03E-02
160GO:0034599: cellular response to oxidative stress2.12E-02
161GO:0030048: actin filament-based movement2.17E-02
162GO:0010628: positive regulation of gene expression2.17E-02
163GO:0006006: glucose metabolic process2.17E-02
164GO:0018107: peptidyl-threonine phosphorylation2.17E-02
165GO:0010075: regulation of meristem growth2.17E-02
166GO:0007623: circadian rhythm2.29E-02
167GO:0009451: RNA modification2.35E-02
168GO:0009934: regulation of meristem structural organization2.36E-02
169GO:0005985: sucrose metabolic process2.56E-02
170GO:0019344: cysteine biosynthetic process2.98E-02
171GO:0000027: ribosomal large subunit assembly2.98E-02
172GO:0016575: histone deacetylation3.20E-02
173GO:0006418: tRNA aminoacylation for protein translation3.20E-02
174GO:0048511: rhythmic process3.42E-02
175GO:0010017: red or far-red light signaling pathway3.65E-02
176GO:0009814: defense response, incompatible interaction3.65E-02
177GO:0016226: iron-sulfur cluster assembly3.65E-02
178GO:0006012: galactose metabolic process3.88E-02
179GO:0009561: megagametogenesis4.12E-02
180GO:0009306: protein secretion4.12E-02
181GO:0006096: glycolytic process4.17E-02
182GO:0048653: anther development4.61E-02
183GO:0042631: cellular response to water deprivation4.61E-02
184GO:0009958: positive gravitropism4.86E-02
185GO:0010197: polar nucleus fusion4.86E-02
RankGO TermAdjusted P value
1GO:0033728: divinyl chlorophyllide a 8-vinyl-reductase activity0.00E+00
2GO:0046406: magnesium protoporphyrin IX methyltransferase activity0.00E+00
3GO:0047513: 1,2-alpha-L-fucosidase activity0.00E+00
4GO:0061634: alpha-D-xyloside xylohydrolase0.00E+00
5GO:0050236: pyridoxine:NADP 4-dehydrogenase activity0.00E+00
6GO:0008887: glycerate kinase activity0.00E+00
7GO:0102550: 2-methyl-6-geranylgeranyl-1,4-benzoquinol methyltransferase activity0.00E+00
8GO:0050278: sedoheptulose-bisphosphatase activity0.00E+00
9GO:0008807: carboxyvinyl-carboxyphosphonate phosphorylmutase activity0.00E+00
10GO:0051721: protein phosphatase 2A binding0.00E+00
11GO:0043014: alpha-tubulin binding0.00E+00
12GO:0047538: 2-carboxy-D-arabinitol-1-phosphatase activity0.00E+00
13GO:0051744: 3,8-divinyl protochlorophyllide a 8-vinyl reductase activity0.00E+00
14GO:0080176: xyloglucan 1,6-alpha-xylosidase activity0.00E+00
15GO:0042903: tubulin deacetylase activity0.00E+00
16GO:0016730: oxidoreductase activity, acting on iron-sulfur proteins as donors0.00E+00
17GO:0004822: isoleucine-tRNA ligase activity0.00E+00
18GO:0008942: nitrite reductase [NAD(P)H] activity0.00E+00
19GO:0019843: rRNA binding1.32E-24
20GO:0003735: structural constituent of ribosome1.04E-12
21GO:0003755: peptidyl-prolyl cis-trans isomerase activity7.81E-12
22GO:0005528: FK506 binding2.03E-08
23GO:0016851: magnesium chelatase activity7.23E-07
24GO:0042132: fructose 1,6-bisphosphate 1-phosphatase activity1.28E-05
25GO:0051920: peroxiredoxin activity1.46E-05
26GO:0016209: antioxidant activity3.37E-05
27GO:0016655: oxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor1.57E-04
28GO:0016987: sigma factor activity1.57E-04
29GO:0001053: plastid sigma factor activity1.57E-04
30GO:0008266: poly(U) RNA binding2.35E-04
31GO:0016168: chlorophyll binding2.99E-04
32GO:0004130: cytochrome-c peroxidase activity3.38E-04
33GO:0042578: phosphoric ester hydrolase activity3.38E-04
34GO:0045156: electron transporter, transferring electrons within the cyclic electron transport pathway of photosynthesis activity4.50E-04
35GO:0004729: oxygen-dependent protoporphyrinogen oxidase activity5.40E-04
36GO:0046906: tetrapyrrole binding5.40E-04
37GO:0050567: glutaminyl-tRNA synthase (glutamine-hydrolyzing) activity5.40E-04
38GO:0052638: indole-3-butyrate beta-glucosyltransferase activity5.40E-04
39GO:0004853: uroporphyrinogen decarboxylase activity5.40E-04
40GO:0045485: omega-6 fatty acid desaturase activity5.40E-04
41GO:0030785: [ribulose-bisphosphate carboxylase]-lysine N-methyltransferase activity5.40E-04
42GO:0051741: 2-methyl-6-phytyl-1,4-benzoquinone methyltransferase activity5.40E-04
43GO:0019899: enzyme binding5.77E-04
44GO:0004033: aldo-keto reductase (NADP) activity7.18E-04
45GO:0009977: proton motive force dependent protein transmembrane transporter activity1.16E-03
46GO:0004047: aminomethyltransferase activity1.16E-03
47GO:0046509: 1,2-diacylglycerol 3-beta-galactosyltransferase activity1.16E-03
48GO:0003919: FMN adenylyltransferase activity1.16E-03
49GO:0008839: 4-hydroxy-tetrahydrodipicolinate reductase1.16E-03
50GO:0008967: phosphoglycolate phosphatase activity1.16E-03
51GO:0047746: chlorophyllase activity1.16E-03
52GO:0042389: omega-3 fatty acid desaturase activity1.16E-03
53GO:0016868: intramolecular transferase activity, phosphotransferases1.16E-03
54GO:0004618: phosphoglycerate kinase activity1.16E-03
55GO:0010297: heteropolysaccharide binding1.16E-03
56GO:0002161: aminoacyl-tRNA editing activity1.91E-03
57GO:0004075: biotin carboxylase activity1.91E-03
58GO:0030267: glyoxylate reductase (NADP) activity1.91E-03
59GO:0070402: NADPH binding1.91E-03
60GO:0031072: heat shock protein binding2.17E-03
61GO:0008236: serine-type peptidase activity2.48E-03
62GO:0008168: methyltransferase activity2.66E-03
63GO:0004375: glycine dehydrogenase (decarboxylating) activity2.76E-03
64GO:0035250: UDP-galactosyltransferase activity2.76E-03
65GO:0048487: beta-tubulin binding2.76E-03
66GO:0043023: ribosomal large subunit binding2.76E-03
67GO:0008097: 5S rRNA binding2.76E-03
68GO:0004601: peroxidase activity2.85E-03
69GO:0031409: pigment binding3.06E-03
70GO:0005509: calcium ion binding3.35E-03
71GO:0004345: glucose-6-phosphate dehydrogenase activity3.72E-03
72GO:0004739: pyruvate dehydrogenase (acetyl-transferring) activity3.72E-03
73GO:1990137: plant seed peroxidase activity3.72E-03
74GO:0009044: xylan 1,4-beta-xylosidase activity3.72E-03
75GO:0043495: protein anchor3.72E-03
76GO:0046556: alpha-L-arabinofuranosidase activity3.72E-03
77GO:0016279: protein-lysine N-methyltransferase activity3.72E-03
78GO:0004252: serine-type endopeptidase activity4.02E-03
79GO:0003723: RNA binding4.06E-03
80GO:0003989: acetyl-CoA carboxylase activity4.78E-03
81GO:0022891: substrate-specific transmembrane transporter activity4.93E-03
82GO:0004366: glycerol-3-phosphate O-acyltransferase activity5.92E-03
83GO:0016688: L-ascorbate peroxidase activity5.92E-03
84GO:0033743: peptide-methionine (R)-S-oxide reductase activity7.16E-03
85GO:0004616: phosphogluconate dehydrogenase (decarboxylating) activity7.16E-03
86GO:0004559: alpha-mannosidase activity7.16E-03
87GO:0050662: coenzyme binding7.31E-03
88GO:0048038: quinone binding8.41E-03
89GO:0004034: aldose 1-epimerase activity9.87E-03
90GO:0016787: hydrolase activity1.01E-02
91GO:0032041: NAD-dependent histone deacetylase activity (H3-K14 specific)1.13E-02
92GO:0016717: oxidoreductase activity, acting on paired donors, with oxidation of a pair of donors resulting in the reduction of molecular oxygen to two molecules of water1.13E-02
93GO:0051082: unfolded protein binding1.14E-02
94GO:0005381: iron ion transmembrane transporter activity1.45E-02
95GO:0004222: metalloendopeptidase activity1.77E-02
96GO:0044183: protein binding involved in protein folding1.80E-02
97GO:0047372: acylglycerol lipase activity1.80E-02
98GO:0016491: oxidoreductase activity1.97E-02
99GO:0000049: tRNA binding1.98E-02
100GO:0004565: beta-galactosidase activity2.17E-02
101GO:0004022: alcohol dehydrogenase (NAD) activity2.17E-02
102GO:0004089: carbonate dehydratase activity2.17E-02
103GO:0003774: motor activity2.36E-02
104GO:0051537: 2 iron, 2 sulfur cluster binding2.84E-02
105GO:0043621: protein self-association2.84E-02
106GO:0004407: histone deacetylase activity2.98E-02
107GO:0051536: iron-sulfur cluster binding2.98E-02
108GO:0042802: identical protein binding3.09E-02
109GO:0043424: protein histidine kinase binding3.20E-02
110GO:0003824: catalytic activity3.41E-02
111GO:0004707: MAP kinase activity3.42E-02
112GO:0004176: ATP-dependent peptidase activity3.42E-02
113GO:0033612: receptor serine/threonine kinase binding3.42E-02
114GO:0003899: DNA-directed 5'-3' RNA polymerase activity3.53E-02
115GO:0015171: amino acid transmembrane transporter activity3.91E-02
116GO:0003756: protein disulfide isomerase activity4.12E-02
117GO:0003727: single-stranded RNA binding4.12E-02
118GO:0004812: aminoacyl-tRNA ligase activity4.36E-02
RankGO TermAdjusted P value
1GO:0098572: stromal side of plastid thylakoid membrane0.00E+00
2GO:0005943: phosphatidylinositol 3-kinase complex, class IA0.00E+00
3GO:0044391: ribosomal subunit0.00E+00
4GO:0009344: nitrite reductase complex [NAD(P)H]0.00E+00
5GO:0009507: chloroplast8.23E-113
6GO:0009570: chloroplast stroma6.06E-60
7GO:0009941: chloroplast envelope7.46E-56
8GO:0009535: chloroplast thylakoid membrane4.18E-55
9GO:0009534: chloroplast thylakoid1.20E-54
10GO:0009543: chloroplast thylakoid lumen1.45E-36
11GO:0009579: thylakoid7.52E-34
12GO:0031977: thylakoid lumen1.71E-20
13GO:0005840: ribosome1.30E-13
14GO:0030095: chloroplast photosystem II1.10E-12
15GO:0009533: chloroplast stromal thylakoid2.96E-09
16GO:0010598: NAD(P)H dehydrogenase complex (plastoquinone)2.30E-08
17GO:0009654: photosystem II oxygen evolving complex2.88E-08
18GO:0010007: magnesium chelatase complex1.52E-07
19GO:0009523: photosystem II3.51E-07
20GO:0019898: extrinsic component of membrane3.51E-07
21GO:0009706: chloroplast inner membrane8.91E-06
22GO:0010319: stromule1.92E-05
23GO:0048046: apoplast2.61E-05
24GO:0010287: plastoglobule1.23E-04
25GO:0000311: plastid large ribosomal subunit1.64E-04
26GO:0042651: thylakoid membrane4.21E-04
27GO:0009782: photosystem I antenna complex5.40E-04
28GO:0030956: glutamyl-tRNA(Gln) amidotransferase complex5.40E-04
29GO:0009515: granal stacked thylakoid5.40E-04
30GO:0009547: plastid ribosome5.40E-04
31GO:0031969: chloroplast membrane1.10E-03
32GO:0000427: plastid-encoded plastid RNA polymerase complex1.16E-03
33GO:0042170: plastid membrane1.16E-03
34GO:0080085: signal recognition particle, chloroplast targeting1.16E-03
35GO:0032040: small-subunit processome1.91E-03
36GO:0033281: TAT protein transport complex1.91E-03
37GO:0000312: plastid small ribosomal subunit2.45E-03
38GO:0030076: light-harvesting complex2.74E-03
39GO:0042646: plastid nucleoid2.76E-03
40GO:0005960: glycine cleavage complex2.76E-03
41GO:0009531: secondary cell wall2.76E-03
42GO:0015934: large ribosomal subunit3.18E-03
43GO:0015935: small ribosomal subunit4.13E-03
44GO:0022626: cytosolic ribosome6.82E-03
45GO:0016363: nuclear matrix7.16E-03
46GO:0009522: photosystem I7.31E-03
47GO:0016020: membrane8.50E-03
48GO:0009538: photosystem I reaction center9.87E-03
49GO:0005786: signal recognition particle, endoplasmic reticulum targeting1.13E-02
50GO:0005811: lipid particle1.13E-02
51GO:0042644: chloroplast nucleoid1.29E-02
52GO:0016459: myosin complex1.62E-02
53GO:0022625: cytosolic large ribosomal subunit1.63E-02
54GO:0009536: plastid1.70E-02
55GO:0009508: plastid chromosome2.17E-02
56GO:0043231: intracellular membrane-bounded organelle3.12E-02
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Gene type



Gene DE type