GO Enrichment Analysis of Co-expressed Genes with
AT3G50270
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0016553: base conversion or substitution editing | 0.00E+00 |
| 2 | GO:0006399: tRNA metabolic process | 0.00E+00 |
| 3 | GO:0034337: RNA folding | 0.00E+00 |
| 4 | GO:1901918: negative regulation of exoribonuclease activity | 0.00E+00 |
| 5 | GO:2000121: regulation of removal of superoxide radicals | 0.00E+00 |
| 6 | GO:0005996: monosaccharide metabolic process | 0.00E+00 |
| 7 | GO:0015979: photosynthesis | 5.35E-25 |
| 8 | GO:0015995: chlorophyll biosynthetic process | 2.51E-11 |
| 9 | GO:0009773: photosynthetic electron transport in photosystem I | 2.67E-11 |
| 10 | GO:0009409: response to cold | 4.39E-09 |
| 11 | GO:0019253: reductive pentose-phosphate cycle | 1.12E-08 |
| 12 | GO:0015976: carbon utilization | 2.22E-07 |
| 13 | GO:0010207: photosystem II assembly | 8.35E-07 |
| 14 | GO:0009735: response to cytokinin | 1.72E-06 |
| 15 | GO:0030388: fructose 1,6-bisphosphate metabolic process | 2.56E-06 |
| 16 | GO:0009772: photosynthetic electron transport in photosystem II | 2.78E-06 |
| 17 | GO:0010196: nonphotochemical quenching | 2.78E-06 |
| 18 | GO:0006000: fructose metabolic process | 9.29E-06 |
| 19 | GO:0006412: translation | 1.19E-05 |
| 20 | GO:0018119: peptidyl-cysteine S-nitrosylation | 1.99E-05 |
| 21 | GO:2001141: regulation of RNA biosynthetic process | 2.11E-05 |
| 22 | GO:0010027: thylakoid membrane organization | 2.88E-05 |
| 23 | GO:0006006: glucose metabolic process | 3.12E-05 |
| 24 | GO:0042742: defense response to bacterium | 3.63E-05 |
| 25 | GO:2000122: negative regulation of stomatal complex development | 3.85E-05 |
| 26 | GO:0006546: glycine catabolic process | 3.85E-05 |
| 27 | GO:0010037: response to carbon dioxide | 3.85E-05 |
| 28 | GO:0018298: protein-chromophore linkage | 4.87E-05 |
| 29 | GO:0006636: unsaturated fatty acid biosynthetic process | 5.46E-05 |
| 30 | GO:0009768: photosynthesis, light harvesting in photosystem I | 7.50E-05 |
| 31 | GO:0042549: photosystem II stabilization | 9.03E-05 |
| 32 | GO:0010114: response to red light | 1.22E-04 |
| 33 | GO:0010019: chloroplast-nucleus signaling pathway | 1.24E-04 |
| 34 | GO:0046467: membrane lipid biosynthetic process | 2.34E-04 |
| 35 | GO:0043489: RNA stabilization | 2.34E-04 |
| 36 | GO:1904966: positive regulation of vitamin E biosynthetic process | 2.34E-04 |
| 37 | GO:0071370: cellular response to gibberellin stimulus | 2.34E-04 |
| 38 | GO:0000481: maturation of 5S rRNA | 2.34E-04 |
| 39 | GO:1904964: positive regulation of phytol biosynthetic process | 2.34E-04 |
| 40 | GO:0071461: cellular response to redox state | 2.34E-04 |
| 41 | GO:0071588: hydrogen peroxide mediated signaling pathway | 2.34E-04 |
| 42 | GO:0010729: positive regulation of hydrogen peroxide biosynthetic process | 2.34E-04 |
| 43 | GO:0006002: fructose 6-phosphate metabolic process | 2.59E-04 |
| 44 | GO:0071482: cellular response to light stimulus | 2.59E-04 |
| 45 | GO:0010206: photosystem II repair | 3.13E-04 |
| 46 | GO:0042254: ribosome biogenesis | 3.23E-04 |
| 47 | GO:0010205: photoinhibition | 3.73E-04 |
| 48 | GO:0006352: DNA-templated transcription, initiation | 5.04E-04 |
| 49 | GO:0034755: iron ion transmembrane transport | 5.20E-04 |
| 50 | GO:0080005: photosystem stoichiometry adjustment | 5.20E-04 |
| 51 | GO:1902326: positive regulation of chlorophyll biosynthetic process | 5.20E-04 |
| 52 | GO:0006094: gluconeogenesis | 6.54E-04 |
| 53 | GO:0005986: sucrose biosynthetic process | 6.54E-04 |
| 54 | GO:0009637: response to blue light | 7.52E-04 |
| 55 | GO:0034599: cellular response to oxidative stress | 7.94E-04 |
| 56 | GO:0005985: sucrose metabolic process | 8.23E-04 |
| 57 | GO:0006013: mannose metabolic process | 8.44E-04 |
| 58 | GO:0090391: granum assembly | 8.44E-04 |
| 59 | GO:0006518: peptide metabolic process | 8.44E-04 |
| 60 | GO:0045493: xylan catabolic process | 8.44E-04 |
| 61 | GO:0009744: response to sucrose | 1.03E-03 |
| 62 | GO:0051513: regulation of monopolar cell growth | 1.20E-03 |
| 63 | GO:0071484: cellular response to light intensity | 1.20E-03 |
| 64 | GO:0006542: glutamine biosynthetic process | 1.61E-03 |
| 65 | GO:0019676: ammonia assimilation cycle | 1.61E-03 |
| 66 | GO:0019464: glycine decarboxylation via glycine cleavage system | 1.61E-03 |
| 67 | GO:0009765: photosynthesis, light harvesting | 1.61E-03 |
| 68 | GO:0045727: positive regulation of translation | 1.61E-03 |
| 69 | GO:0015994: chlorophyll metabolic process | 1.61E-03 |
| 70 | GO:0009658: chloroplast organization | 1.63E-03 |
| 71 | GO:0006096: glycolytic process | 1.85E-03 |
| 72 | GO:0032543: mitochondrial translation | 2.05E-03 |
| 73 | GO:0031365: N-terminal protein amino acid modification | 2.05E-03 |
| 74 | GO:0009247: glycolipid biosynthetic process | 2.05E-03 |
| 75 | GO:0034052: positive regulation of plant-type hypersensitive response | 2.05E-03 |
| 76 | GO:0015986: ATP synthesis coupled proton transport | 2.12E-03 |
| 77 | GO:0000302: response to reactive oxygen species | 2.43E-03 |
| 78 | GO:0010190: cytochrome b6f complex assembly | 2.52E-03 |
| 79 | GO:0055114: oxidation-reduction process | 2.64E-03 |
| 80 | GO:1901259: chloroplast rRNA processing | 3.03E-03 |
| 81 | GO:0010189: vitamin E biosynthetic process | 3.03E-03 |
| 82 | GO:0050829: defense response to Gram-negative bacterium | 3.58E-03 |
| 83 | GO:0009645: response to low light intensity stimulus | 3.58E-03 |
| 84 | GO:0009610: response to symbiotic fungus | 3.58E-03 |
| 85 | GO:0009850: auxin metabolic process | 4.15E-03 |
| 86 | GO:0043068: positive regulation of programmed cell death | 4.15E-03 |
| 87 | GO:0019375: galactolipid biosynthetic process | 4.15E-03 |
| 88 | GO:0032508: DNA duplex unwinding | 4.15E-03 |
| 89 | GO:0009657: plastid organization | 4.74E-03 |
| 90 | GO:0032544: plastid translation | 4.74E-03 |
| 91 | GO:0010218: response to far red light | 5.04E-03 |
| 92 | GO:0009631: cold acclimation | 5.28E-03 |
| 93 | GO:0010119: regulation of stomatal movement | 5.28E-03 |
| 94 | GO:0007568: aging | 5.28E-03 |
| 95 | GO:0006783: heme biosynthetic process | 5.37E-03 |
| 96 | GO:0006754: ATP biosynthetic process | 5.37E-03 |
| 97 | GO:0000373: Group II intron splicing | 5.37E-03 |
| 98 | GO:0009051: pentose-phosphate shunt, oxidative branch | 5.37E-03 |
| 99 | GO:0046686: response to cadmium ion | 6.06E-03 |
| 100 | GO:0006949: syncytium formation | 6.71E-03 |
| 101 | GO:0006782: protoporphyrinogen IX biosynthetic process | 6.71E-03 |
| 102 | GO:0019684: photosynthesis, light reaction | 7.43E-03 |
| 103 | GO:0009089: lysine biosynthetic process via diaminopimelate | 7.43E-03 |
| 104 | GO:0043085: positive regulation of catalytic activity | 7.43E-03 |
| 105 | GO:0006879: cellular iron ion homeostasis | 7.43E-03 |
| 106 | GO:0000272: polysaccharide catabolic process | 7.43E-03 |
| 107 | GO:0009750: response to fructose | 7.43E-03 |
| 108 | GO:0009698: phenylpropanoid metabolic process | 7.43E-03 |
| 109 | GO:0010628: positive regulation of gene expression | 8.93E-03 |
| 110 | GO:0006417: regulation of translation | 1.12E-02 |
| 111 | GO:0000027: ribosomal large subunit assembly | 1.22E-02 |
| 112 | GO:0031408: oxylipin biosynthetic process | 1.40E-02 |
| 113 | GO:0042545: cell wall modification | 1.40E-02 |
| 114 | GO:0006396: RNA processing | 1.48E-02 |
| 115 | GO:0009814: defense response, incompatible interaction | 1.50E-02 |
| 116 | GO:0009831: plant-type cell wall modification involved in multidimensional cell growth | 1.59E-02 |
| 117 | GO:0006810: transport | 1.68E-02 |
| 118 | GO:0006284: base-excision repair | 1.69E-02 |
| 119 | GO:0006397: mRNA processing | 1.86E-02 |
| 120 | GO:0080022: primary root development | 1.89E-02 |
| 121 | GO:0000413: protein peptidyl-prolyl isomerization | 1.89E-02 |
| 122 | GO:0042631: cellular response to water deprivation | 1.89E-02 |
| 123 | GO:0042744: hydrogen peroxide catabolic process | 2.05E-02 |
| 124 | GO:0009790: embryo development | 2.11E-02 |
| 125 | GO:0009749: response to glucose | 2.20E-02 |
| 126 | GO:0019252: starch biosynthetic process | 2.20E-02 |
| 127 | GO:0006633: fatty acid biosynthetic process | 2.27E-02 |
| 128 | GO:0002229: defense response to oomycetes | 2.31E-02 |
| 129 | GO:0045490: pectin catabolic process | 2.49E-02 |
| 130 | GO:0009451: RNA modification | 2.55E-02 |
| 131 | GO:0009828: plant-type cell wall loosening | 2.65E-02 |
| 132 | GO:0009627: systemic acquired resistance | 3.25E-02 |
| 133 | GO:0042128: nitrate assimilation | 3.25E-02 |
| 134 | GO:0010411: xyloglucan metabolic process | 3.38E-02 |
| 135 | GO:0009793: embryo development ending in seed dormancy | 3.60E-02 |
| 136 | GO:0009416: response to light stimulus | 3.60E-02 |
| 137 | GO:0009817: defense response to fungus, incompatible interaction | 3.63E-02 |
| 138 | GO:0009407: toxin catabolic process | 3.89E-02 |
| 139 | GO:0045087: innate immune response | 4.30E-02 |
| 140 | GO:0016051: carbohydrate biosynthetic process | 4.30E-02 |
| 141 | GO:0080167: response to karrikin | 4.76E-02 |
| 142 | GO:0007169: transmembrane receptor protein tyrosine kinase signaling pathway | 4.91E-02 |
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0045550: geranylgeranyl reductase activity | 0.00E+00 |
| 2 | GO:0009979: 16:0 monogalactosyldiacylglycerol desaturase activity | 0.00E+00 |
| 3 | GO:0050278: sedoheptulose-bisphosphatase activity | 0.00E+00 |
| 4 | GO:0080176: xyloglucan 1,6-alpha-xylosidase activity | 0.00E+00 |
| 5 | GO:0008942: nitrite reductase [NAD(P)H] activity | 0.00E+00 |
| 6 | GO:0051738: xanthophyll binding | 0.00E+00 |
| 7 | GO:0046406: magnesium protoporphyrin IX methyltransferase activity | 0.00E+00 |
| 8 | GO:0016754: sinapoylglucose-malate O-sinapoyltransferase activity | 0.00E+00 |
| 9 | GO:0061634: alpha-D-xyloside xylohydrolase | 0.00E+00 |
| 10 | GO:0019843: rRNA binding | 5.31E-13 |
| 11 | GO:0003735: structural constituent of ribosome | 4.78E-08 |
| 12 | GO:0016168: chlorophyll binding | 1.30E-06 |
| 13 | GO:0047100: glyceraldehyde-3-phosphate dehydrogenase (NADP+) (phosphorylating) activity | 2.56E-06 |
| 14 | GO:0042132: fructose 1,6-bisphosphate 1-phosphatase activity | 2.56E-06 |
| 15 | GO:0016851: magnesium chelatase activity | 2.11E-05 |
| 16 | GO:0004089: carbonate dehydratase activity | 3.12E-05 |
| 17 | GO:0001053: plastid sigma factor activity | 3.85E-05 |
| 18 | GO:0016987: sigma factor activity | 3.85E-05 |
| 19 | GO:0031409: pigment binding | 5.46E-05 |
| 20 | GO:0004130: cytochrome-c peroxidase activity | 9.03E-05 |
| 21 | GO:0019899: enzyme binding | 1.64E-04 |
| 22 | GO:0004853: uroporphyrinogen decarboxylase activity | 2.34E-04 |
| 23 | GO:0045485: omega-6 fatty acid desaturase activity | 2.34E-04 |
| 24 | GO:0052638: indole-3-butyrate beta-glucosyltransferase activity | 2.34E-04 |
| 25 | GO:0046906: tetrapyrrole binding | 2.34E-04 |
| 26 | GO:0016717: oxidoreductase activity, acting on paired donors, with oxidation of a pair of donors resulting in the reduction of molecular oxygen to two molecules of water | 2.59E-04 |
| 27 | GO:0016630: protochlorophyllide reductase activity | 5.20E-04 |
| 28 | GO:0008839: 4-hydroxy-tetrahydrodipicolinate reductase | 5.20E-04 |
| 29 | GO:0047746: chlorophyllase activity | 5.20E-04 |
| 30 | GO:0042389: omega-3 fatty acid desaturase activity | 5.20E-04 |
| 31 | GO:0004618: phosphoglycerate kinase activity | 5.20E-04 |
| 32 | GO:0010297: heteropolysaccharide binding | 5.20E-04 |
| 33 | GO:0004047: aminomethyltransferase activity | 5.20E-04 |
| 34 | GO:0046509: 1,2-diacylglycerol 3-beta-galactosyltransferase activity | 5.20E-04 |
| 35 | GO:0047158: sinapoylglucose-sinapoylglucose O-sinapoyltransferase activity | 5.20E-04 |
| 36 | GO:0008266: poly(U) RNA binding | 7.36E-04 |
| 37 | GO:0016620: oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor | 8.44E-04 |
| 38 | GO:0010277: chlorophyllide a oxygenase [overall] activity | 8.44E-04 |
| 39 | GO:0050661: NADP binding | 8.84E-04 |
| 40 | GO:0051537: 2 iron, 2 sulfur cluster binding | 1.13E-03 |
| 41 | GO:0016628: oxidoreductase activity, acting on the CH-CH group of donors, NAD or NADP as acceptor | 1.20E-03 |
| 42 | GO:0035250: UDP-galactosyltransferase activity | 1.20E-03 |
| 43 | GO:0004365: glyceraldehyde-3-phosphate dehydrogenase (NAD+) (phosphorylating) activity | 1.20E-03 |
| 44 | GO:0004375: glycine dehydrogenase (decarboxylating) activity | 1.20E-03 |
| 45 | GO:0003755: peptidyl-prolyl cis-trans isomerase activity | 1.25E-03 |
| 46 | GO:0022891: substrate-specific transmembrane transporter activity | 1.44E-03 |
| 47 | GO:0043495: protein anchor | 1.61E-03 |
| 48 | GO:0009044: xylan 1,4-beta-xylosidase activity | 1.61E-03 |
| 49 | GO:0046556: alpha-L-arabinofuranosidase activity | 1.61E-03 |
| 50 | GO:0004345: glucose-6-phosphate dehydrogenase activity | 1.61E-03 |
| 51 | GO:0046933: proton-transporting ATP synthase activity, rotational mechanism | 1.97E-03 |
| 52 | GO:0003959: NADPH dehydrogenase activity | 2.05E-03 |
| 53 | GO:0004356: glutamate-ammonia ligase activity | 2.05E-03 |
| 54 | GO:0008725: DNA-3-methyladenine glycosylase activity | 2.05E-03 |
| 55 | GO:0042578: phosphoric ester hydrolase activity | 2.52E-03 |
| 56 | GO:0016688: L-ascorbate peroxidase activity | 2.52E-03 |
| 57 | GO:0004559: alpha-mannosidase activity | 3.03E-03 |
| 58 | GO:0051920: peroxiredoxin activity | 3.03E-03 |
| 59 | GO:0008235: metalloexopeptidase activity | 3.58E-03 |
| 60 | GO:0004564: beta-fructofuranosidase activity | 4.15E-03 |
| 61 | GO:0016209: antioxidant activity | 4.15E-03 |
| 62 | GO:0003723: RNA binding | 4.49E-03 |
| 63 | GO:0004575: sucrose alpha-glucosidase activity | 6.03E-03 |
| 64 | GO:0005381: iron ion transmembrane transporter activity | 6.03E-03 |
| 65 | GO:0030234: enzyme regulator activity | 6.71E-03 |
| 66 | GO:0004177: aminopeptidase activity | 7.43E-03 |
| 67 | GO:0031072: heat shock protein binding | 8.93E-03 |
| 68 | GO:0051287: NAD binding | 9.04E-03 |
| 69 | GO:0003899: DNA-directed 5'-3' RNA polymerase activity | 1.01E-02 |
| 70 | GO:0045330: aspartyl esterase activity | 1.12E-02 |
| 71 | GO:0005528: FK506 binding | 1.22E-02 |
| 72 | GO:0030599: pectinesterase activity | 1.35E-02 |
| 73 | GO:0004176: ATP-dependent peptidase activity | 1.40E-02 |
| 74 | GO:0003727: single-stranded RNA binding | 1.69E-02 |
| 75 | GO:0003756: protein disulfide isomerase activity | 1.69E-02 |
| 76 | GO:0009055: electron carrier activity | 1.92E-02 |
| 77 | GO:0050662: coenzyme binding | 2.10E-02 |
| 78 | GO:0005509: calcium ion binding | 2.50E-02 |
| 79 | GO:0008483: transaminase activity | 2.77E-02 |
| 80 | GO:0008194: UDP-glycosyltransferase activity | 2.79E-02 |
| 81 | GO:0016597: amino acid binding | 2.89E-02 |
| 82 | GO:0000982: transcription factor activity, RNA polymerase II core promoter proximal region sequence-specific binding | 3.50E-02 |
| 83 | GO:0004601: peroxidase activity | 3.85E-02 |
| 84 | GO:0004222: metalloendopeptidase activity | 3.89E-02 |
| 85 | GO:0016614: oxidoreductase activity, acting on CH-OH group of donors | 4.03E-02 |
| 86 | GO:0000987: core promoter proximal region sequence-specific DNA binding | 4.43E-02 |
| 87 | GO:0003729: mRNA binding | 4.99E-02 |
| 88 | GO:0004364: glutathione transferase activity | 5.00E-02 |
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0009575: chromoplast stroma | 0.00E+00 |
| 2 | GO:0005943: phosphatidylinositol 3-kinase complex, class IA | 0.00E+00 |
| 3 | GO:0009507: chloroplast | 3.74E-68 |
| 4 | GO:0009535: chloroplast thylakoid membrane | 1.58E-54 |
| 5 | GO:0009534: chloroplast thylakoid | 1.27E-43 |
| 6 | GO:0009941: chloroplast envelope | 1.39E-42 |
| 7 | GO:0009579: thylakoid | 1.02E-30 |
| 8 | GO:0009570: chloroplast stroma | 1.55E-30 |
| 9 | GO:0009543: chloroplast thylakoid lumen | 1.47E-14 |
| 10 | GO:0010319: stromule | 7.22E-12 |
| 11 | GO:0031977: thylakoid lumen | 8.68E-09 |
| 12 | GO:0030095: chloroplast photosystem II | 1.12E-08 |
| 13 | GO:0009706: chloroplast inner membrane | 1.28E-07 |
| 14 | GO:0010287: plastoglobule | 2.37E-07 |
| 15 | GO:0048046: apoplast | 2.68E-07 |
| 16 | GO:0009523: photosystem II | 3.34E-07 |
| 17 | GO:0031969: chloroplast membrane | 6.32E-07 |
| 18 | GO:0005840: ribosome | 8.61E-07 |
| 19 | GO:0016020: membrane | 2.02E-06 |
| 20 | GO:0009654: photosystem II oxygen evolving complex | 2.28E-06 |
| 21 | GO:0010598: NAD(P)H dehydrogenase complex (plastoquinone) | 8.65E-06 |
| 22 | GO:0010007: magnesium chelatase complex | 9.29E-06 |
| 23 | GO:0009522: photosystem I | 1.00E-05 |
| 24 | GO:0019898: extrinsic component of membrane | 1.16E-05 |
| 25 | GO:0000311: plastid large ribosomal subunit | 2.51E-05 |
| 26 | GO:0045261: proton-transporting ATP synthase complex, catalytic core F(1) | 9.03E-05 |
| 27 | GO:0009538: photosystem I reaction center | 2.09E-04 |
| 28 | GO:0009515: granal stacked thylakoid | 2.34E-04 |
| 29 | GO:0009547: plastid ribosome | 2.34E-04 |
| 30 | GO:0009783: photosystem II antenna complex | 2.34E-04 |
| 31 | GO:0042170: plastid membrane | 5.20E-04 |
| 32 | GO:0000427: plastid-encoded plastid RNA polymerase complex | 5.20E-04 |
| 33 | GO:0032040: small-subunit processome | 5.76E-04 |
| 34 | GO:0015934: large ribosomal subunit | 6.69E-04 |
| 35 | GO:0000312: plastid small ribosomal subunit | 7.36E-04 |
| 36 | GO:0030076: light-harvesting complex | 8.23E-04 |
| 37 | GO:0042651: thylakoid membrane | 1.11E-03 |
| 38 | GO:0009505: plant-type cell wall | 1.18E-03 |
| 39 | GO:0005960: glycine cleavage complex | 1.20E-03 |
| 40 | GO:0005775: vacuolar lumen | 1.20E-03 |
| 41 | GO:0042646: plastid nucleoid | 1.20E-03 |
| 42 | GO:0015935: small ribosomal subunit | 1.21E-03 |
| 43 | GO:0009544: chloroplast ATP synthase complex | 1.61E-03 |
| 44 | GO:0009517: PSII associated light-harvesting complex II | 1.61E-03 |
| 45 | GO:0005618: cell wall | 1.95E-03 |
| 46 | GO:0022626: cytosolic ribosome | 2.33E-03 |
| 47 | GO:0016363: nuclear matrix | 3.03E-03 |
| 48 | GO:0030529: intracellular ribonucleoprotein complex | 3.51E-03 |
| 49 | GO:0005763: mitochondrial small ribosomal subunit | 5.37E-03 |
| 50 | GO:0071944: cell periphery | 2.54E-02 |
| 51 | GO:0009295: nucleoid | 2.77E-02 |
| 52 | GO:0000325: plant-type vacuole | 4.03E-02 |
| 53 | GO:0031902: late endosome membrane | 4.85E-02 |