co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT3G50240

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0090627: plant epidermal cell differentiation	0.00E+00
2	GO:0006003: fructose 2,6-bisphosphate metabolic process	0.00E+00
3	GO:0061157: mRNA destabilization	0.00E+00
4	GO:0006780: uroporphyrinogen III biosynthetic process	0.00E+00
5	GO:0006428: isoleucyl-tRNA aminoacylation	0.00E+00
6	GO:0006086: acetyl-CoA biosynthetic process from pyruvate	1.54E-05
7	GO:0009742: brassinosteroid mediated signaling pathway	2.79E-05
8	GO:0010480: microsporocyte differentiation	7.90E-05
9	GO:0034628: 'de novo' NAD biosynthetic process from aspartate	7.90E-05
10	GO:0043609: regulation of carbon utilization	7.90E-05
11	GO:0010115: regulation of abscisic acid biosynthetic process	1.89E-04
12	GO:0010541: acropetal auxin transport	1.89E-04
13	GO:0007017: microtubule-based process	2.59E-04
14	GO:0051176: positive regulation of sulfur metabolic process	3.17E-04
15	GO:2001295: malonyl-CoA biosynthetic process	3.17E-04
16	GO:0006000: fructose metabolic process	3.17E-04
17	GO:0006013: mannose metabolic process	3.17E-04
18	GO:0010160: formation of animal organ boundary	3.17E-04
19	GO:0009226: nucleotide-sugar biosynthetic process	4.58E-04
20	GO:1901332: negative regulation of lateral root development	4.58E-04
21	GO:0010031: circumnutation	4.58E-04
22	GO:0034059: response to anoxia	4.58E-04
23	GO:0080170: hydrogen peroxide transmembrane transport	4.58E-04
24	GO:0043481: anthocyanin accumulation in tissues in response to UV light	4.58E-04
25	GO:0010088: phloem development	4.58E-04
26	GO:0045727: positive regulation of translation	6.09E-04
27	GO:2000762: regulation of phenylpropanoid metabolic process	7.72E-04
28	GO:0009435: NAD biosynthetic process	7.72E-04
29	GO:0009913: epidermal cell differentiation	9.42E-04
30	GO:0060918: auxin transport	9.42E-04
31	GO:1902456: regulation of stomatal opening	9.42E-04
32	GO:0006751: glutathione catabolic process	9.42E-04
33	GO:0042549: photosystem II stabilization	9.42E-04
34	GO:0010256: endomembrane system organization	9.42E-04
35	GO:0000741: karyogamy	9.42E-04
36	GO:0015995: chlorophyll biosynthetic process	9.59E-04
37	GO:0009416: response to light stimulus	9.97E-04
38	GO:0006694: steroid biosynthetic process	1.12E-03
39	GO:0010067: procambium histogenesis	1.12E-03
40	GO:0005975: carbohydrate metabolic process	1.26E-03
41	GO:0051510: regulation of unidimensional cell growth	1.31E-03
42	GO:0048437: floral organ development	1.31E-03
43	GO:0070413: trehalose metabolism in response to stress	1.51E-03
44	GO:0032544: plastid translation	1.72E-03
45	GO:0009808: lignin metabolic process	1.72E-03
46	GO:0006002: fructose 6-phosphate metabolic process	1.72E-03
47	GO:0010206: photosystem II repair	1.95E-03
48	GO:0009060: aerobic respiration	1.95E-03
49	GO:0046685: response to arsenic-containing substance	1.95E-03
50	GO:0045892: negative regulation of transcription, DNA-templated	2.04E-03
51	GO:0006779: porphyrin-containing compound biosynthetic process	2.18E-03
52	GO:0009641: shade avoidance	2.41E-03
53	GO:0006782: protoporphyrinogen IX biosynthetic process	2.41E-03
54	GO:0048229: gametophyte development	2.66E-03
55	GO:0010015: root morphogenesis	2.66E-03
56	GO:0009807: lignan biosynthetic process	2.66E-03
57	GO:0008361: regulation of cell size	2.92E-03
58	GO:0008152: metabolic process	2.95E-03
59	GO:0009718: anthocyanin-containing compound biosynthetic process	3.18E-03
60	GO:0010075: regulation of meristem growth	3.18E-03
61	GO:0010223: secondary shoot formation	3.45E-03
62	GO:0010540: basipetal auxin transport	3.45E-03
63	GO:0009934: regulation of meristem structural organization	3.45E-03
64	GO:0010143: cutin biosynthetic process	3.45E-03
65	GO:0010030: positive regulation of seed germination	3.73E-03
66	GO:0006833: water transport	4.02E-03
67	GO:0005992: trehalose biosynthetic process	4.31E-03
68	GO:0006418: tRNA aminoacylation for protein translation	4.61E-03
69	GO:0016226: iron-sulfur cluster assembly	5.24E-03
70	GO:0040008: regulation of growth	5.28E-03
71	GO:0001944: vasculature development	5.56E-03
72	GO:0010089: xylem development	5.89E-03
73	GO:0048443: stamen development	5.89E-03
74	GO:0019722: calcium-mediated signaling	5.89E-03
75	GO:0009789: positive regulation of abscisic acid-activated signaling pathway	6.22E-03
76	GO:0034220: ion transmembrane transport	6.57E-03
77	GO:0048653: anther development	6.57E-03
78	GO:0042631: cellular response to water deprivation	6.57E-03
79	GO:0009958: positive gravitropism	6.92E-03
80	GO:0010197: polar nucleus fusion	6.92E-03
81	GO:0009741: response to brassinosteroid	6.92E-03
82	GO:0048825: cotyledon development	7.64E-03
83	GO:0009791: post-embryonic development	7.64E-03
84	GO:0016132: brassinosteroid biosynthetic process	8.01E-03
85	GO:0009826: unidimensional cell growth	8.23E-03
86	GO:0010583: response to cyclopentenone	8.39E-03
87	GO:0032502: developmental process	8.39E-03
88	GO:0030163: protein catabolic process	8.77E-03
89	GO:0071281: cellular response to iron ion	8.77E-03
90	GO:0007165: signal transduction	8.79E-03
91	GO:0009639: response to red or far red light	9.16E-03
92	GO:0007267: cell-cell signaling	9.56E-03
93	GO:0071805: potassium ion transmembrane transport	9.56E-03
94	GO:0009723: response to ethylene	9.89E-03
95	GO:0007169: transmembrane receptor protein tyrosine kinase signaling pathway	1.10E-02
96	GO:0048481: plant ovule development	1.25E-02
97	GO:0010311: lateral root formation	1.29E-02
98	GO:0006499: N-terminal protein myristoylation	1.34E-02
99	GO:0010218: response to far red light	1.34E-02
100	GO:0009834: plant-type secondary cell wall biogenesis	1.34E-02
101	GO:0048527: lateral root development	1.38E-02
102	GO:0009637: response to blue light	1.48E-02
103	GO:0009926: auxin polar transport	1.77E-02
104	GO:0009640: photomorphogenesis	1.77E-02
105	GO:0009651: response to salt stress	1.80E-02
106	GO:0006855: drug transmembrane transport	1.97E-02
107	GO:0006468: protein phosphorylation	2.14E-02
108	GO:0006364: rRNA processing	2.19E-02
109	GO:0006813: potassium ion transport	2.19E-02
110	GO:0009734: auxin-activated signaling pathway	2.21E-02
111	GO:0051603: proteolysis involved in cellular protein catabolic process	2.24E-02
112	GO:0006096: glycolytic process	2.46E-02
113	GO:0045893: positive regulation of transcription, DNA-templated	3.20E-02
114	GO:0009845: seed germination	3.49E-02
115	GO:0055085: transmembrane transport	3.54E-02
116	GO:0006633: fatty acid biosynthetic process	3.88E-02
117	GO:0043161: proteasome-mediated ubiquitin-dependent protein catabolic process	4.49E-02

Rank	GO Term	Adjusted P value
1	GO:0004331: fructose-2,6-bisphosphate 2-phosphatase activity	0.00E+00
2	GO:0003873: 6-phosphofructo-2-kinase activity	0.00E+00
3	GO:0004852: uroporphyrinogen-III synthase activity	0.00E+00
4	GO:0050614: delta24-sterol reductase activity	0.00E+00
5	GO:0047513: 1,2-alpha-L-fucosidase activity	0.00E+00
6	GO:0008987: quinolinate synthetase A activity	0.00E+00
7	GO:0004822: isoleucine-tRNA ligase activity	0.00E+00
8	GO:0050139: nicotinate-N-glucosyltransferase activity	7.90E-05
9	GO:0004565: beta-galactosidase activity	1.45E-04
10	GO:0010283: pinoresinol reductase activity	1.89E-04
11	GO:0016868: intramolecular transferase activity, phosphotransferases	1.89E-04
12	GO:0003839: gamma-glutamylcyclotransferase activity	1.89E-04
13	GO:0004075: biotin carboxylase activity	3.17E-04
14	GO:0002161: aminoacyl-tRNA editing activity	3.17E-04
15	GO:0004148: dihydrolipoyl dehydrogenase activity	3.17E-04
16	GO:0004871: signal transducer activity	3.24E-04
17	GO:0003825: alpha,alpha-trehalose-phosphate synthase (UDP-forming) activity	4.58E-04
18	GO:0004739: pyruvate dehydrogenase (acetyl-transferring) activity	6.09E-04
19	GO:0005200: structural constituent of cytoskeleton	7.35E-04
20	GO:0003989: acetyl-CoA carboxylase activity	7.72E-04
21	GO:2001070: starch binding	9.42E-04
22	GO:0042578: phosphoric ester hydrolase activity	9.42E-04
23	GO:0004559: alpha-mannosidase activity	1.12E-03
24	GO:0042803: protein homodimerization activity	2.12E-03
25	GO:0004805: trehalose-phosphatase activity	2.41E-03
26	GO:0008047: enzyme activator activity	2.41E-03
27	GO:0000049: tRNA binding	2.92E-03
28	GO:0010329: auxin efflux transmembrane transporter activity	3.18E-03
29	GO:0008266: poly(U) RNA binding	3.45E-03
30	GO:0003712: transcription cofactor activity	3.73E-03
31	GO:0005528: FK506 binding	4.31E-03
32	GO:0004252: serine-type endopeptidase activity	4.45E-03
33	GO:0015079: potassium ion transmembrane transporter activity	4.61E-03
34	GO:0033612: receptor serine/threonine kinase binding	4.92E-03
35	GO:0003727: single-stranded RNA binding	5.89E-03
36	GO:0004812: aminoacyl-tRNA ligase activity	6.22E-03
37	GO:0050662: coenzyme binding	7.28E-03
38	GO:0050660: flavin adenine dinucleotide binding	9.89E-03
39	GO:0015250: water channel activity	1.04E-02
40	GO:0008236: serine-type peptidase activity	1.21E-02
41	GO:0005096: GTPase activator activity	1.29E-02
42	GO:0015238: drug transmembrane transporter activity	1.29E-02
43	GO:0016614: oxidoreductase activity, acting on CH-OH group of donors	1.38E-02
44	GO:0003924: GTPase activity	1.57E-02
45	GO:0051539: 4 iron, 4 sulfur cluster binding	1.62E-02
46	GO:0004185: serine-type carboxypeptidase activity	1.77E-02
47	GO:0051537: 2 iron, 2 sulfur cluster binding	1.87E-02
48	GO:0043621: protein self-association	1.87E-02
49	GO:0035091: phosphatidylinositol binding	1.87E-02
50	GO:0046983: protein dimerization activity	1.90E-02
51	GO:0003755: peptidyl-prolyl cis-trans isomerase activity	1.97E-02
52	GO:0004672: protein kinase activity	2.15E-02
53	GO:0008289: lipid binding	2.19E-02
54	GO:0031625: ubiquitin protein ligase binding	2.35E-02
55	GO:0004650: polygalacturonase activity	2.63E-02
56	GO:0080043: quercetin 3-O-glucosyltransferase activity	2.63E-02
57	GO:0080044: quercetin 7-O-glucosyltransferase activity	2.63E-02
58	GO:0004674: protein serine/threonine kinase activity	3.18E-02
59	GO:0019843: rRNA binding	3.30E-02
60	GO:0016829: lyase activity	3.49E-02
61	GO:0004675: transmembrane receptor protein serine/threonine kinase activity	3.94E-02
62	GO:0015297: antiporter activity	4.01E-02
63	GO:0008194: UDP-glycosyltransferase activity	4.49E-02
64	GO:0005525: GTP binding	4.57E-02
65	GO:0042626: ATPase activity, coupled to transmembrane movement of substances	4.91E-02

Rank	GO Term	Adjusted P value
1	GO:0009570: chloroplast stroma	3.25E-06
2	GO:0005773: vacuole	5.65E-05
3	GO:0045298: tubulin complex	6.25E-05
4	GO:0009505: plant-type cell wall	1.81E-04
5	GO:0009533: chloroplast stromal thylakoid	1.31E-03
6	GO:0005874: microtubule	1.53E-03
7	GO:0048046: apoplast	1.60E-03
8	GO:0005886: plasma membrane	1.61E-03
9	GO:0009506: plasmodesma	2.45E-03
10	GO:0009941: chloroplast envelope	2.66E-03
11	GO:0009507: chloroplast	1.41E-02
12	GO:0005618: cell wall	2.31E-02
13	GO:0010287: plastoglobule	3.17E-02
14	GO:0009543: chloroplast thylakoid lumen	3.30E-02
15	GO:0009579: thylakoid	3.33E-02
16	GO:0009534: chloroplast thylakoid	3.37E-02
17	GO:0009705: plant-type vacuole membrane	4.14E-02
18	GO:0005576: extracellular region	4.30E-02