co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT3G49470

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0006429: leucyl-tRNA aminoacylation	0.00E+00
2	GO:0010275: NAD(P)H dehydrogenase complex assembly	0.00E+00
3	GO:0046719: regulation by virus of viral protein levels in host cell	0.00E+00
4	GO:0032194: ubiquinone biosynthetic process via 3,4-dihydroxy-5-polyprenylbenzoate	0.00E+00
5	GO:0070681: glutaminyl-tRNAGln biosynthesis via transamidation	0.00E+00
6	GO:1901698: response to nitrogen compound	0.00E+00
7	GO:2000121: regulation of removal of superoxide radicals	0.00E+00
8	GO:0061635: regulation of protein complex stability	0.00E+00
9	GO:0016553: base conversion or substitution editing	0.00E+00
10	GO:0060416: response to growth hormone	0.00E+00
11	GO:0042371: vitamin K biosynthetic process	0.00E+00
12	GO:0006399: tRNA metabolic process	0.00E+00
13	GO:0070125: mitochondrial translational elongation	0.00E+00
14	GO:0006412: translation	1.78E-15
15	GO:0032544: plastid translation	2.80E-11
16	GO:0042254: ribosome biogenesis	2.16E-10
17	GO:0009735: response to cytokinin	9.21E-08
18	GO:0010027: thylakoid membrane organization	4.03E-07
19	GO:0009658: chloroplast organization	5.75E-07
20	GO:0015995: chlorophyll biosynthetic process	6.81E-07
21	GO:0015979: photosynthesis	2.46E-06
22	GO:0006782: protoporphyrinogen IX biosynthetic process	5.74E-05
23	GO:0009793: embryo development ending in seed dormancy	5.90E-05
24	GO:0032543: mitochondrial translation	1.54E-04
25	GO:0045038: protein import into chloroplast thylakoid membrane	1.54E-04
26	GO:0042372: phylloquinone biosynthetic process	2.97E-04
27	GO:1901259: chloroplast rRNA processing	2.97E-04
28	GO:0010729: positive regulation of hydrogen peroxide biosynthetic process	4.10E-04
29	GO:0006434: seryl-tRNA aminoacylation	4.10E-04
30	GO:0046901: tetrahydrofolylpolyglutamate biosynthetic process	4.10E-04
31	GO:0000476: maturation of 4.5S rRNA	4.10E-04
32	GO:0000967: rRNA 5'-end processing	4.10E-04
33	GO:0043489: RNA stabilization	4.10E-04
34	GO:0097056: selenocysteinyl-tRNA(Sec) biosynthetic process	4.10E-04
35	GO:1904966: positive regulation of vitamin E biosynthetic process	4.10E-04
36	GO:0042547: cell wall modification involved in multidimensional cell growth	4.10E-04
37	GO:1904964: positive regulation of phytol biosynthetic process	4.10E-04
38	GO:1902458: positive regulation of stomatal opening	4.10E-04
39	GO:0034337: RNA folding	4.10E-04
40	GO:0009790: embryo development	4.68E-04
41	GO:0042255: ribosome assembly	4.80E-04
42	GO:0071482: cellular response to light stimulus	5.86E-04
43	GO:0006783: heme biosynthetic process	7.02E-04
44	GO:0006779: porphyrin-containing compound biosynthetic process	8.29E-04
45	GO:0034470: ncRNA processing	8.88E-04
46	GO:0043039: tRNA aminoacylation	8.88E-04
47	GO:1902326: positive regulation of chlorophyll biosynthetic process	8.88E-04
48	GO:1900871: chloroplast mRNA modification	8.88E-04
49	GO:0034755: iron ion transmembrane transport	8.88E-04
50	GO:0080148: negative regulation of response to water deprivation	8.88E-04
51	GO:1903426: regulation of reactive oxygen species biosynthetic process	8.88E-04
52	GO:0009409: response to cold	1.07E-03
53	GO:0006352: DNA-templated transcription, initiation	1.11E-03
54	GO:0015706: nitrate transport	1.27E-03
55	GO:0045037: protein import into chloroplast stroma	1.27E-03
56	GO:0006011: UDP-glucose metabolic process	1.44E-03
57	GO:0006954: inflammatory response	1.44E-03
58	GO:0006518: peptide metabolic process	1.44E-03
59	GO:0006617: SRP-dependent cotranslational protein targeting to membrane, signal sequence recognition	1.44E-03
60	GO:0071705: nitrogen compound transport	1.44E-03
61	GO:0006006: glucose metabolic process	1.44E-03
62	GO:0005977: glycogen metabolic process	1.44E-03
63	GO:0010167: response to nitrate	1.82E-03
64	GO:0090351: seedling development	1.82E-03
65	GO:0006636: unsaturated fatty acid biosynthetic process	2.03E-03
66	GO:0006241: CTP biosynthetic process	2.08E-03
67	GO:0080170: hydrogen peroxide transmembrane transport	2.08E-03
68	GO:0006165: nucleoside diphosphate phosphorylation	2.08E-03
69	GO:0006228: UTP biosynthetic process	2.08E-03
70	GO:0006424: glutamyl-tRNA aminoacylation	2.08E-03
71	GO:0016556: mRNA modification	2.08E-03
72	GO:2001141: regulation of RNA biosynthetic process	2.08E-03
73	GO:1902476: chloride transmembrane transport	2.08E-03
74	GO:0071249: cellular response to nitrate	2.80E-03
75	GO:0006183: GTP biosynthetic process	2.80E-03
76	GO:0030104: water homeostasis	2.80E-03
77	GO:0006749: glutathione metabolic process	2.80E-03
78	GO:0071483: cellular response to blue light	2.80E-03
79	GO:0006808: regulation of nitrogen utilization	2.80E-03
80	GO:0009814: defense response, incompatible interaction	2.98E-03
81	GO:0006730: one-carbon metabolic process	2.98E-03
82	GO:0009306: protein secretion	3.54E-03
83	GO:0009247: glycolipid biosynthetic process	3.59E-03
84	GO:0034052: positive regulation of plant-type hypersensitive response	3.59E-03
85	GO:0006564: L-serine biosynthetic process	3.59E-03
86	GO:0010236: plastoquinone biosynthetic process	3.59E-03
87	GO:0000413: protein peptidyl-prolyl isomerization	4.15E-03
88	GO:0016554: cytidine to uridine editing	4.44E-03
89	GO:0006655: phosphatidylglycerol biosynthetic process	4.44E-03
90	GO:0010190: cytochrome b6f complex assembly	4.44E-03
91	GO:0032973: amino acid export	4.44E-03
92	GO:0018258: protein O-linked glycosylation via hydroxyproline	4.44E-03
93	GO:0010942: positive regulation of cell death	4.44E-03
94	GO:0010405: arabinogalactan protein metabolic process	4.44E-03
95	GO:0042549: photosystem II stabilization	4.44E-03
96	GO:0009955: adaxial/abaxial pattern specification	5.35E-03
97	GO:0000462: maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)	5.35E-03
98	GO:0032502: developmental process	5.90E-03
99	GO:0009772: photosynthetic electron transport in photosystem II	6.32E-03
100	GO:0043090: amino acid import	6.32E-03
101	GO:0006614: SRP-dependent cotranslational protein targeting to membrane	6.32E-03
102	GO:0006821: chloride transport	6.32E-03
103	GO:0050829: defense response to Gram-negative bacterium	6.32E-03
104	GO:0010444: guard mother cell differentiation	6.32E-03
105	GO:0009610: response to symbiotic fungus	6.32E-03
106	GO:0052543: callose deposition in cell wall	7.35E-03
107	GO:0048564: photosystem I assembly	7.35E-03
108	GO:0043068: positive regulation of programmed cell death	7.35E-03
109	GO:0006353: DNA-templated transcription, termination	7.35E-03
110	GO:0006605: protein targeting	7.35E-03
111	GO:0019375: galactolipid biosynthetic process	7.35E-03
112	GO:0010078: maintenance of root meristem identity	7.35E-03
113	GO:0009704: de-etiolation	7.35E-03
114	GO:2000070: regulation of response to water deprivation	7.35E-03
115	GO:0009932: cell tip growth	8.43E-03
116	GO:0009657: plastid organization	8.43E-03
117	GO:0043562: cellular response to nitrogen levels	8.43E-03
118	GO:0017004: cytochrome complex assembly	8.43E-03
119	GO:0009051: pentose-phosphate shunt, oxidative branch	9.58E-03
120	GO:0009821: alkaloid biosynthetic process	9.58E-03
121	GO:0010206: photosystem II repair	9.58E-03
122	GO:0080144: amino acid homeostasis	9.58E-03
123	GO:0031146: SCF-dependent proteasomal ubiquitin-dependent protein catabolic process	1.08E-02
124	GO:0010205: photoinhibition	1.08E-02
125	GO:1900865: chloroplast RNA modification	1.08E-02
126	GO:0000160: phosphorelay signal transduction system	1.10E-02
127	GO:0009407: toxin catabolic process	1.16E-02
128	GO:0046686: response to cadmium ion	1.16E-02
129	GO:0006535: cysteine biosynthetic process from serine	1.20E-02
130	GO:0048527: lateral root development	1.21E-02
131	GO:0009684: indoleacetic acid biosynthetic process	1.33E-02
132	GO:0019684: photosynthesis, light reaction	1.33E-02
133	GO:0009773: photosynthetic electron transport in photosystem I	1.33E-02
134	GO:0009089: lysine biosynthetic process via diaminopimelate	1.33E-02
135	GO:0045087: innate immune response	1.33E-02
136	GO:0009073: aromatic amino acid family biosynthetic process	1.33E-02
137	GO:0006415: translational termination	1.33E-02
138	GO:0006879: cellular iron ion homeostasis	1.33E-02
139	GO:0009451: RNA modification	1.38E-02
140	GO:0016024: CDP-diacylglycerol biosynthetic process	1.47E-02
141	GO:0009767: photosynthetic electron transport chain	1.61E-02
142	GO:0010588: cotyledon vascular tissue pattern formation	1.61E-02
143	GO:0010628: positive regulation of gene expression	1.61E-02
144	GO:0050826: response to freezing	1.61E-02
145	GO:0008380: RNA splicing	1.68E-02
146	GO:0048467: gynoecium development	1.75E-02
147	GO:0010207: photosystem II assembly	1.75E-02
148	GO:0019253: reductive pentose-phosphate cycle	1.75E-02
149	GO:0009636: response to toxic substance	1.93E-02
150	GO:0019344: cysteine biosynthetic process	2.21E-02
151	GO:0000027: ribosomal large subunit assembly	2.21E-02
152	GO:0006364: rRNA processing	2.32E-02
153	GO:0009736: cytokinin-activated signaling pathway	2.32E-02
154	GO:0006418: tRNA aminoacylation for protein translation	2.37E-02
155	GO:0019915: lipid storage	2.53E-02
156	GO:0061077: chaperone-mediated protein folding	2.53E-02
157	GO:0031408: oxylipin biosynthetic process	2.53E-02
158	GO:0007005: mitochondrion organization	2.70E-02
159	GO:0009411: response to UV	2.87E-02
160	GO:0019722: calcium-mediated signaling	3.05E-02
161	GO:0009561: megagametogenesis	3.05E-02
162	GO:0016117: carotenoid biosynthetic process	3.23E-02
163	GO:0080022: primary root development	3.41E-02
164	GO:0008033: tRNA processing	3.41E-02
165	GO:0034220: ion transmembrane transport	3.41E-02
166	GO:0010087: phloem or xylem histogenesis	3.41E-02
167	GO:0009958: positive gravitropism	3.60E-02
168	GO:0009741: response to brassinosteroid	3.60E-02
169	GO:0045454: cell redox homeostasis	3.82E-02
170	GO:0048825: cotyledon development	3.99E-02
171	GO:0009851: auxin biosynthetic process	3.99E-02
172	GO:0002229: defense response to oomycetes	4.18E-02
173	GO:0000302: response to reactive oxygen species	4.18E-02
174	GO:0042744: hydrogen peroxide catabolic process	4.69E-02
175	GO:0009567: double fertilization forming a zygote and endosperm	4.79E-02
176	GO:0006457: protein folding	4.90E-02

Rank	GO Term	Adjusted P value
1	GO:0005048: signal sequence binding	0.00E+00
2	GO:0009974: zeinoxanthin epsilon hydroxylase activity	0.00E+00
3	GO:0047513: 1,2-alpha-L-fucosidase activity	0.00E+00
4	GO:0046428: 1,4-dihydroxy-2-naphthoate octaprenyltransferase activity	0.00E+00
5	GO:0009979: 16:0 monogalactosyldiacylglycerol desaturase activity	0.00E+00
6	GO:0004823: leucine-tRNA ligase activity	0.00E+00
7	GO:0008756: o-succinylbenzoate-CoA ligase activity	0.00E+00
8	GO:0015038: glutathione disulfide oxidoreductase activity	0.00E+00
9	GO:0008935: 1,4-dihydroxy-2-naphthoyl-CoA synthase activity	0.00E+00
10	GO:0019843: rRNA binding	9.79E-32
11	GO:0003735: structural constituent of ribosome	6.90E-20
12	GO:0003755: peptidyl-prolyl cis-trans isomerase activity	6.81E-06
13	GO:0004326: tetrahydrofolylpolyglutamate synthase activity	7.51E-06
14	GO:0016851: magnesium chelatase activity	5.66E-05
15	GO:0016987: sigma factor activity	9.96E-05
16	GO:0001053: plastid sigma factor activity	9.96E-05
17	GO:0008266: poly(U) RNA binding	1.31E-04
18	GO:0003723: RNA binding	3.82E-04
19	GO:0003727: single-stranded RNA binding	3.95E-04
20	GO:0004729: oxygen-dependent protoporphyrinogen oxidase activity	4.10E-04
21	GO:0050567: glutaminyl-tRNA synthase (glutamine-hydrolyzing) activity	4.10E-04
22	GO:0004828: serine-tRNA ligase activity	4.10E-04
23	GO:0004655: porphobilinogen synthase activity	4.10E-04
24	GO:0009671: nitrate:proton symporter activity	4.10E-04
25	GO:0004853: uroporphyrinogen decarboxylase activity	4.10E-04
26	GO:0016717: oxidoreductase activity, acting on paired donors, with oxidation of a pair of donors resulting in the reduction of molecular oxygen to two molecules of water	5.86E-04
27	GO:0009977: proton motive force dependent protein transmembrane transporter activity	8.88E-04
28	GO:0004617: phosphoglycerate dehydrogenase activity	8.88E-04
29	GO:0046509: 1,2-diacylglycerol 3-beta-galactosyltransferase activity	8.88E-04
30	GO:0080097: L-tryptophan:pyruvate aminotransferase activity	8.88E-04
31	GO:0008839: 4-hydroxy-tetrahydrodipicolinate reductase	8.88E-04
32	GO:0047100: glyceraldehyde-3-phosphate dehydrogenase (NADP+) (phosphorylating) activity	8.88E-04
33	GO:0042389: omega-3 fatty acid desaturase activity	8.88E-04
34	GO:0050362: L-tryptophan:2-oxoglutarate aminotransferase activity	8.88E-04
35	GO:0003729: mRNA binding	1.36E-03
36	GO:0017150: tRNA dihydrouridine synthase activity	1.44E-03
37	GO:0002161: aminoacyl-tRNA editing activity	1.44E-03
38	GO:0004148: dihydrolipoyl dehydrogenase activity	1.44E-03
39	GO:0003983: UTP:glucose-1-phosphate uridylyltransferase activity	1.44E-03
40	GO:0031072: heat shock protein binding	1.44E-03
41	GO:0035250: UDP-galactosyltransferase activity	2.08E-03
42	GO:0016149: translation release factor activity, codon specific	2.08E-03
43	GO:0004550: nucleoside diphosphate kinase activity	2.08E-03
44	GO:0008097: 5S rRNA binding	2.08E-03
45	GO:0004365: glyceraldehyde-3-phosphate dehydrogenase (NAD+) (phosphorylating) activity	2.08E-03
46	GO:0005528: FK506 binding	2.25E-03
47	GO:0004345: glucose-6-phosphate dehydrogenase activity	2.80E-03
48	GO:0004607: phosphatidylcholine-sterol O-acyltransferase activity	2.80E-03
49	GO:0043495: protein anchor	2.80E-03
50	GO:0005253: anion channel activity	2.80E-03
51	GO:0003841: 1-acylglycerol-3-phosphate O-acyltransferase activity	2.80E-03
52	GO:0004659: prenyltransferase activity	2.80E-03
53	GO:0008374: O-acyltransferase activity	3.59E-03
54	GO:0016846: carbon-sulfur lyase activity	3.59E-03
55	GO:0016773: phosphotransferase activity, alcohol group as acceptor	3.59E-03
56	GO:1990714: hydroxyproline O-galactosyltransferase activity	4.44E-03
57	GO:0004130: cytochrome-c peroxidase activity	4.44E-03
58	GO:0016208: AMP binding	4.44E-03
59	GO:0005247: voltage-gated chloride channel activity	4.44E-03
60	GO:0004124: cysteine synthase activity	5.35E-03
61	GO:0051920: peroxiredoxin activity	5.35E-03
62	GO:0045156: electron transporter, transferring electrons within the cyclic electron transport pathway of photosynthesis activity	5.35E-03
63	GO:0000156: phosphorelay response regulator activity	6.30E-03
64	GO:0019899: enzyme binding	6.32E-03
65	GO:0016722: oxidoreductase activity, oxidizing metal ions	7.12E-03
66	GO:0016209: antioxidant activity	7.35E-03
67	GO:0008312: 7S RNA binding	7.35E-03
68	GO:0004033: aldo-keto reductase (NADP) activity	7.35E-03
69	GO:0016597: amino acid binding	7.56E-03
70	GO:0003747: translation release factor activity	9.58E-03
71	GO:0005381: iron ion transmembrane transporter activity	1.08E-02
72	GO:0016844: strictosidine synthase activity	1.08E-02
73	GO:0015112: nitrate transmembrane transporter activity	1.08E-02
74	GO:0004222: metalloendopeptidase activity	1.16E-02
75	GO:0008794: arsenate reductase (glutaredoxin) activity	1.33E-02
76	GO:0050661: NADP binding	1.52E-02
77	GO:0004519: endonuclease activity	1.64E-02
78	GO:0004364: glutathione transferase activity	1.65E-02
79	GO:0042973: glucan endo-1,3-beta-D-glucosidase activity	1.75E-02
80	GO:0051537: 2 iron, 2 sulfur cluster binding	1.86E-02
81	GO:0008146: sulfotransferase activity	1.90E-02
82	GO:0051119: sugar transmembrane transporter activity	1.90E-02
83	GO:0051287: NAD binding	2.08E-02
84	GO:0003899: DNA-directed 5'-3' RNA polymerase activity	2.32E-02
85	GO:0004601: peroxidase activity	2.34E-02
86	GO:0043424: protein histidine kinase binding	2.37E-02
87	GO:0003690: double-stranded DNA binding	2.40E-02
88	GO:0004176: ATP-dependent peptidase activity	2.53E-02
89	GO:0022891: substrate-specific transmembrane transporter activity	2.87E-02
90	GO:0030570: pectate lyase activity	2.87E-02
91	GO:0003756: protein disulfide isomerase activity	3.05E-02
92	GO:0004812: aminoacyl-tRNA ligase activity	3.23E-02
93	GO:0051082: unfolded protein binding	3.31E-02
94	GO:0015035: protein disulfide oxidoreductase activity	3.40E-02
95	GO:0008080: N-acetyltransferase activity	3.60E-02
96	GO:0010181: FMN binding	3.79E-02
97	GO:0004252: serine-type endopeptidase activity	4.58E-02
98	GO:0008565: protein transporter activity	4.93E-02

Rank	GO Term	Adjusted P value
1	GO:0044391: ribosomal subunit	0.00E+00
2	GO:0009507: chloroplast	3.56E-76
3	GO:0009570: chloroplast stroma	1.99E-42
4	GO:0009941: chloroplast envelope	1.02E-38
5	GO:0009535: chloroplast thylakoid membrane	1.26E-23
6	GO:0009543: chloroplast thylakoid lumen	6.72E-20
7	GO:0009579: thylakoid	3.17E-19
8	GO:0005840: ribosome	1.13E-17
9	GO:0009534: chloroplast thylakoid	2.12E-14
10	GO:0031977: thylakoid lumen	2.38E-10
11	GO:0000311: plastid large ribosomal subunit	5.02E-08
12	GO:0009654: photosystem II oxygen evolving complex	3.78E-07
13	GO:0031969: chloroplast membrane	1.33E-05
14	GO:0010007: magnesium chelatase complex	2.60E-05
15	GO:0019898: extrinsic component of membrane	5.94E-05
16	GO:0009536: plastid	6.95E-05
17	GO:0009295: nucleoid	1.09E-04
18	GO:0000312: plastid small ribosomal subunit	1.31E-04
19	GO:0009706: chloroplast inner membrane	2.28E-04
20	GO:0015934: large ribosomal subunit	2.73E-04
21	GO:0009533: chloroplast stromal thylakoid	3.84E-04
22	GO:0043674: columella	4.10E-04
23	GO:0030956: glutamyl-tRNA(Gln) amidotransferase complex	4.10E-04
24	GO:0009344: nitrite reductase complex [NAD(P)H]	4.10E-04
25	GO:0009547: plastid ribosome	4.10E-04
26	GO:0042170: plastid membrane	8.88E-04
27	GO:0080085: signal recognition particle, chloroplast targeting	8.88E-04
28	GO:0033281: TAT protein transport complex	1.44E-03
29	GO:0009508: plastid chromosome	1.44E-03
30	GO:0009509: chromoplast	1.44E-03
31	GO:0030095: chloroplast photosystem II	1.62E-03
32	GO:0042646: plastid nucleoid	2.08E-03
33	GO:0042651: thylakoid membrane	2.48E-03
34	GO:0015935: small ribosomal subunit	2.73E-03
35	GO:0016020: membrane	3.06E-03
36	GO:0034707: chloride channel complex	4.44E-03
37	GO:0016363: nuclear matrix	5.35E-03
38	GO:0005762: mitochondrial large ribosomal subunit	5.35E-03
39	GO:0042807: central vacuole	6.32E-03
40	GO:0010319: stromule	7.12E-03
41	GO:0030529: intracellular ribonucleoprotein complex	8.01E-03
42	GO:0009539: photosystem II reaction center	8.43E-03
43	GO:0005786: signal recognition particle, endoplasmic reticulum targeting	8.43E-03
44	GO:0010598: NAD(P)H dehydrogenase complex (plastoquinone)	9.58E-03
45	GO:0005763: mitochondrial small ribosomal subunit	9.58E-03
46	GO:0032040: small-subunit processome	1.47E-02
47	GO:0019013: viral nucleocapsid	1.61E-02
48	GO:0022627: cytosolic small ribosomal subunit	1.92E-02
49	GO:0046658: anchored component of plasma membrane	1.92E-02
50	GO:0005622: intracellular	2.87E-02
51	GO:0022626: cytosolic ribosome	3.17E-02
52	GO:0022625: cytosolic large ribosomal subunit	3.26E-02
53	GO:0009522: photosystem I	3.79E-02
54	GO:0009523: photosystem II	3.99E-02
55	GO:0005623: cell	4.24E-02
56	GO:0071944: cell periphery	4.59E-02