co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT3G49010

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0044843: cell cycle G1/S phase transition	0.00E+00
2	GO:0006412: translation	1.84E-122
3	GO:0042254: ribosome biogenesis	7.43E-51
4	GO:0000027: ribosomal large subunit assembly	4.84E-13
5	GO:0000028: ribosomal small subunit assembly	4.41E-11
6	GO:0009735: response to cytokinin	1.61E-07
7	GO:0009955: adaxial/abaxial pattern specification	6.40E-07
8	GO:0002181: cytoplasmic translation	4.55E-06
9	GO:0009793: embryo development ending in seed dormancy	1.68E-05
10	GO:0006364: rRNA processing	7.69E-05
11	GO:0006407: rRNA export from nucleus	1.58E-04
12	GO:0030490: maturation of SSU-rRNA	1.58E-04
13	GO:0000461: endonucleolytic cleavage to generate mature 3'-end of SSU-rRNA from (SSU-rRNA, 5.8S rRNA, LSU-rRNA)	1.58E-04
14	GO:0000447: endonucleolytic cleavage in ITS1 to separate SSU-rRNA from 5.8S rRNA and LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)	1.58E-04
15	GO:0010162: seed dormancy process	2.50E-04
16	GO:0048569: post-embryonic animal organ development	3.60E-04
17	GO:0009967: positive regulation of signal transduction	3.60E-04
18	GO:0006626: protein targeting to mitochondrion	3.82E-04
19	GO:1902626: assembly of large subunit precursor of preribosome	5.89E-04
20	GO:0010476: gibberellin mediated signaling pathway	5.89E-04
21	GO:0042256: mature ribosome assembly	5.89E-04
22	GO:0090506: axillary shoot meristem initiation	5.89E-04
23	GO:0009944: polarity specification of adaxial/abaxial axis	5.95E-04
24	GO:0009965: leaf morphogenesis	5.99E-04
25	GO:0070301: cellular response to hydrogen peroxide	8.43E-04
26	GO:0006241: CTP biosynthetic process	8.43E-04
27	GO:0006165: nucleoside diphosphate phosphorylation	8.43E-04
28	GO:0006228: UTP biosynthetic process	8.43E-04
29	GO:0009294: DNA mediated transformation	8.52E-04
30	GO:2000032: regulation of secondary shoot formation	1.12E-03
31	GO:0042274: ribosomal small subunit biogenesis	1.12E-03
32	GO:0006183: GTP biosynthetic process	1.12E-03
33	GO:0071493: cellular response to UV-B	1.41E-03
34	GO:0000470: maturation of LSU-rRNA	1.74E-03
35	GO:0000911: cytokinesis by cell plate formation	2.09E-03
36	GO:0042255: ribosome assembly	2.84E-03
37	GO:0001558: regulation of cell growth	3.25E-03
38	GO:0000387: spliceosomal snRNP assembly	4.12E-03
39	GO:0008283: cell proliferation	4.29E-03
40	GO:0010015: root morphogenesis	5.05E-03
41	GO:0006913: nucleocytoplasmic transport	5.05E-03
42	GO:0006820: anion transport	5.55E-03
43	GO:0010229: inflorescence development	6.06E-03
44	GO:0010102: lateral root morphogenesis	6.06E-03
45	GO:0048467: gynoecium development	6.59E-03
46	GO:0006414: translational elongation	7.69E-03
47	GO:0030150: protein import into mitochondrial matrix	8.27E-03
48	GO:0051302: regulation of cell division	8.86E-03
49	GO:0007005: mitochondrion organization	1.01E-02
50	GO:0040007: growth	1.07E-02
51	GO:0071215: cellular response to abscisic acid stimulus	1.07E-02
52	GO:0010501: RNA secondary structure unwinding	1.27E-02
53	GO:0000413: protein peptidyl-prolyl isomerization	1.27E-02
54	GO:0006413: translational initiation	1.33E-02
55	GO:0009749: response to glucose	1.48E-02
56	GO:0009791: post-embryonic development	1.48E-02
57	GO:0032502: developmental process	1.63E-02
58	GO:0010090: trichome morphogenesis	1.71E-02
59	GO:0010252: auxin homeostasis	1.78E-02
60	GO:0009409: response to cold	1.93E-02
61	GO:0046686: response to cadmium ion	2.37E-02
62	GO:0006811: ion transport	2.62E-02
63	GO:0010043: response to zinc ion	2.71E-02
64	GO:0009644: response to high light intensity	3.66E-02
65	GO:0042787: protein ubiquitination involved in ubiquitin-dependent protein catabolic process	3.96E-02
66	GO:0006417: regulation of translation	4.60E-02

Rank	GO Term	Adjusted P value
1	GO:0016018: cyclosporin A binding	0.00E+00
2	GO:0003735: structural constituent of ribosome	5.67E-146
3	GO:0003729: mRNA binding	5.57E-38
4	GO:0019843: rRNA binding	3.98E-08
5	GO:0003723: RNA binding	4.74E-06
6	GO:0008097: 5S rRNA binding	1.06E-05
7	GO:0005078: MAP-kinase scaffold activity	3.60E-04
8	GO:0032947: protein complex scaffold	5.89E-04
9	GO:0070181: small ribosomal subunit rRNA binding	5.89E-04
10	GO:0004407: histone deacetylase activity	5.95E-04
11	GO:0004550: nucleoside diphosphate kinase activity	8.43E-04
12	GO:0008235: metalloexopeptidase activity	2.45E-03
13	GO:0015450: P-P-bond-hydrolysis-driven protein transmembrane transporter activity	2.64E-03
14	GO:0015288: porin activity	2.84E-03
15	GO:0008308: voltage-gated anion channel activity	3.25E-03
16	GO:0015266: protein channel activity	6.06E-03
17	GO:0008026: ATP-dependent helicase activity	8.71E-03
18	GO:0046872: metal ion binding	1.36E-02
19	GO:0004004: ATP-dependent RNA helicase activity	2.27E-02
20	GO:0003746: translation elongation factor activity	2.89E-02
21	GO:0003755: peptidyl-prolyl cis-trans isomerase activity	3.86E-02

Rank	GO Term	Adjusted P value
1	GO:0043186: P granule	0.00E+00
2	GO:0022626: cytosolic ribosome	1.30E-96
3	GO:0005840: ribosome	1.95E-94
4	GO:0022625: cytosolic large ribosomal subunit	7.98E-87
5	GO:0022627: cytosolic small ribosomal subunit	8.90E-59
6	GO:0005730: nucleolus	1.72E-43
7	GO:0005829: cytosol	3.73E-33
8	GO:0009506: plasmodesma	7.74E-29
9	GO:0005737: cytoplasm	1.56E-28
10	GO:0015934: large ribosomal subunit	1.66E-21
11	GO:0005774: vacuolar membrane	2.99E-14
12	GO:0005618: cell wall	1.18E-12
13	GO:0016020: membrane	6.87E-12
14	GO:0015935: small ribosomal subunit	1.26E-10
15	GO:0005773: vacuole	1.32E-10
16	GO:0005886: plasma membrane	1.45E-07
17	GO:0005742: mitochondrial outer membrane translocase complex	1.44E-04
18	GO:0030686: 90S preribosome	1.58E-04
19	GO:0009507: chloroplast	1.63E-04
20	GO:0034719: SMN-Sm protein complex	5.89E-04
21	GO:0005853: eukaryotic translation elongation factor 1 complex	5.89E-04
22	GO:0005682: U5 snRNP	1.12E-03
23	GO:0005687: U4 snRNP	1.41E-03
24	GO:0097526: spliceosomal tri-snRNP complex	1.41E-03
25	GO:0005689: U12-type spliceosomal complex	2.09E-03
26	GO:0005622: intracellular	2.58E-03
27	GO:0071004: U2-type prespliceosome	2.84E-03
28	GO:0046930: pore complex	3.25E-03
29	GO:0005763: mitochondrial small ribosomal subunit	3.67E-03
30	GO:0005685: U1 snRNP	3.67E-03
31	GO:0071011: precatalytic spliceosome	4.12E-03
32	GO:0005686: U2 snRNP	4.58E-03
33	GO:0071013: catalytic step 2 spliceosome	5.05E-03
34	GO:0019013: viral nucleocapsid	6.06E-03
35	GO:0005758: mitochondrial intermembrane space	8.27E-03
36	GO:0005741: mitochondrial outer membrane	9.46E-03
37	GO:0030529: intracellular ribonucleoprotein complex	2.02E-02
38	GO:0005743: mitochondrial inner membrane	3.75E-02
39	GO:0005681: spliceosomal complex	4.82E-02
40	GO:0005747: mitochondrial respiratory chain complex I	4.93E-02