Gene type: Transcription factor Metabolic gene Others DE type: Up Down Slightly_up Slightly_down Mixeded Others

GO Enrichment Analysis of Co-expressed Genes with

AT3G48930

GO-BP
GO-MF
GO-CC
RankGO TermAdjusted P value
1GO:0009967: positive regulation of signal transduction0.00E+00
2GO:0044843: cell cycle G1/S phase transition0.00E+00
3GO:0006412: translation3.63E-131
4GO:0042254: ribosome biogenesis2.75E-51
5GO:0000027: ribosomal large subunit assembly2.39E-15
6GO:0009735: response to cytokinin1.68E-06
7GO:0071215: cellular response to abscisic acid stimulus4.54E-05
8GO:0009955: adaxial/abaxial pattern specification6.27E-05
9GO:0000461: endonucleolytic cleavage to generate mature 3'-end of SSU-rRNA from (SSU-rRNA, 5.8S rRNA, LSU-rRNA)1.52E-04
10GO:0000447: endonucleolytic cleavage in ITS1 to separate SSU-rRNA from 5.8S rRNA and LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)1.52E-04
11GO:0006007: glucose catabolic process1.52E-04
12GO:0006407: rRNA export from nucleus1.52E-04
13GO:0048569: post-embryonic animal organ development3.47E-04
14GO:0009409: response to cold3.51E-04
15GO:0006414: translational elongation4.02E-04
16GO:0009965: leaf morphogenesis5.57E-04
17GO:1902626: assembly of large subunit precursor of preribosome5.68E-04
18GO:0002181: cytoplasmic translation5.68E-04
19GO:0010476: gibberellin mediated signaling pathway5.68E-04
20GO:0042256: mature ribosome assembly5.68E-04
21GO:0006241: CTP biosynthetic process8.13E-04
22GO:0006165: nucleoside diphosphate phosphorylation8.13E-04
23GO:0006228: UTP biosynthetic process8.13E-04
24GO:0070301: cellular response to hydrogen peroxide8.13E-04
25GO:0006183: GTP biosynthetic process1.08E-03
26GO:0044205: 'de novo' UMP biosynthetic process1.08E-03
27GO:0042274: ribosomal small subunit biogenesis1.08E-03
28GO:0071493: cellular response to UV-B1.36E-03
29GO:0009845: seed germination1.58E-03
30GO:0000470: maturation of LSU-rRNA1.67E-03
31GO:0000911: cytokinesis by cell plate formation2.01E-03
32GO:0006207: 'de novo' pyrimidine nucleobase biosynthetic process2.36E-03
33GO:0000028: ribosomal small subunit assembly2.73E-03
34GO:0001558: regulation of cell growth3.12E-03
35GO:0006526: arginine biosynthetic process3.12E-03
36GO:0009793: embryo development ending in seed dormancy3.90E-03
37GO:0000387: spliceosomal snRNP assembly3.96E-03
38GO:0008283: cell proliferation4.05E-03
39GO:0009644: response to high light intensity4.38E-03
40GO:0006913: nucleocytoplasmic transport4.86E-03
41GO:0010015: root morphogenesis4.86E-03
42GO:0006364: rRNA processing5.45E-03
43GO:0010102: lateral root morphogenesis5.83E-03
44GO:0006626: protein targeting to mitochondrion5.83E-03
45GO:0010229: inflorescence development5.83E-03
46GO:0006417: regulation of translation6.04E-03
47GO:0006541: glutamine metabolic process6.33E-03
48GO:0046686: response to cadmium ion6.38E-03
49GO:0048367: shoot system development6.65E-03
50GO:0051302: regulation of cell division8.51E-03
51GO:0007005: mitochondrion organization9.69E-03
52GO:0040007: growth1.03E-02
53GO:0010118: stomatal movement1.22E-02
54GO:0009791: post-embryonic development1.42E-02
55GO:0009749: response to glucose1.42E-02
56GO:0032502: developmental process1.57E-02
57GO:0010090: trichome morphogenesis1.64E-02
58GO:0010043: response to zinc ion2.60E-02
59GO:0042787: protein ubiquitination involved in ubiquitin-dependent protein catabolic process3.81E-02
60GO:0048364: root development3.98E-02
61GO:0006096: glycolytic process4.63E-02
62GO:0009620: response to fungus4.95E-02
RankGO TermAdjusted P value
1GO:0005078: MAP-kinase scaffold activity0.00E+00
2GO:0003735: structural constituent of ribosome1.23E-163
3GO:0003729: mRNA binding7.88E-37
4GO:0019843: rRNA binding3.25E-08
5GO:0008097: 5S rRNA binding9.86E-06
6GO:0004088: carbamoyl-phosphate synthase (glutamine-hydrolyzing) activity1.52E-04
7GO:0046537: 2,3-bisphosphoglycerate-independent phosphoglycerate mutase activity3.47E-04
8GO:0032947: protein complex scaffold5.68E-04
9GO:0070181: small ribosomal subunit rRNA binding5.68E-04
10GO:0004550: nucleoside diphosphate kinase activity8.13E-04
11GO:0008235: metalloexopeptidase activity2.36E-03
12GO:0004871: signal transducer activity6.55E-03
13GO:0003723: RNA binding1.60E-02
14GO:0000166: nucleotide binding1.67E-02
15GO:0015450: P-P-bond-hydrolysis-driven protein transmembrane transporter activity2.34E-02
16GO:0030145: manganese ion binding2.60E-02
RankGO TermAdjusted P value
1GO:0043186: P granule0.00E+00
2GO:0022626: cytosolic ribosome2.56E-124
3GO:0005840: ribosome7.38E-100
4GO:0022625: cytosolic large ribosomal subunit6.52E-95
5GO:0022627: cytosolic small ribosomal subunit1.63E-61
6GO:0005730: nucleolus5.21E-44
7GO:0005737: cytoplasm3.40E-40
8GO:0005829: cytosol2.00E-37
9GO:0009506: plasmodesma2.39E-29
10GO:0015934: large ribosomal subunit1.25E-17
11GO:0005774: vacuolar membrane1.26E-15
12GO:0016020: membrane1.56E-15
13GO:0015935: small ribosomal subunit8.91E-13
14GO:0005773: vacuole7.56E-10
15GO:0005886: plasma membrane4.66E-09
16GO:0005618: cell wall7.80E-09
17GO:0009507: chloroplast2.21E-06
18GO:0005951: carbamoyl-phosphate synthase complex1.52E-04
19GO:0030686: 90S preribosome1.52E-04
20GO:0034719: SMN-Sm protein complex5.68E-04
21GO:0005622: intracellular5.75E-04
22GO:0005682: U5 snRNP1.08E-03
23GO:0005687: U4 snRNP1.36E-03
24GO:0097526: spliceosomal tri-snRNP complex1.36E-03
25GO:0005689: U12-type spliceosomal complex2.01E-03
26GO:0071004: U2-type prespliceosome2.73E-03
27GO:0005742: mitochondrial outer membrane translocase complex3.12E-03
28GO:0005685: U1 snRNP3.53E-03
29GO:0005763: mitochondrial small ribosomal subunit3.53E-03
30GO:0071011: precatalytic spliceosome3.96E-03
31GO:0005740: mitochondrial envelope4.40E-03
32GO:0005686: U2 snRNP4.40E-03
33GO:0071013: catalytic step 2 spliceosome4.86E-03
34GO:0019013: viral nucleocapsid5.83E-03
35GO:0005834: heterotrimeric G-protein complex6.87E-03
36GO:0005758: mitochondrial intermembrane space7.95E-03
37GO:0030529: intracellular ribonucleoprotein complex1.94E-02
38GO:0005681: spliceosomal complex4.63E-02
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Gene type



Gene DE type