Gene type: Transcription factor Metabolic gene Others DE type: Up Down Slightly_up Slightly_down Mixeded Others

GO Enrichment Analysis of Co-expressed Genes with

AT3G48850

GO-BP
GO-MF
GO-CC
RankGO TermAdjusted P value
1GO:0006182: cGMP biosynthetic process0.00E+00
2GO:0006099: tricarboxylic acid cycle5.00E-06
3GO:0046686: response to cadmium ion3.49E-05
4GO:0006121: mitochondrial electron transport, succinate to ubiquinone9.17E-05
5GO:0009636: response to toxic substance1.53E-04
6GO:0006855: drug transmembrane transport1.63E-04
7GO:0009617: response to bacterium1.93E-04
8GO:0006979: response to oxidative stress1.95E-04
9GO:0006102: isocitrate metabolic process2.12E-04
10GO:0046244: salicylic acid catabolic process2.36E-04
11GO:0048448: stamen morphogenesis2.36E-04
12GO:0048455: stamen formation2.36E-04
13GO:0010450: inflorescence meristem growth2.36E-04
14GO:0051938: L-glutamate import2.36E-04
15GO:0015760: glucose-6-phosphate transport2.36E-04
16GO:1990641: response to iron ion starvation2.36E-04
17GO:0099132: ATP hydrolysis coupled cation transmembrane transport2.36E-04
18GO:0010726: positive regulation of hydrogen peroxide metabolic process2.36E-04
19GO:0010421: hydrogen peroxide-mediated programmed cell death2.36E-04
20GO:0003400: regulation of COPII vesicle coating2.36E-04
21GO:1901183: positive regulation of camalexin biosynthetic process2.36E-04
22GO:0033306: phytol metabolic process2.36E-04
23GO:0006007: glucose catabolic process2.36E-04
24GO:0010193: response to ozone2.47E-04
25GO:0009688: abscisic acid biosynthetic process4.42E-04
26GO:0008535: respiratory chain complex IV assembly5.24E-04
27GO:0015712: hexose phosphate transport5.24E-04
28GO:0060919: auxin influx5.24E-04
29GO:0097054: L-glutamate biosynthetic process5.24E-04
30GO:0043091: L-arginine import5.24E-04
31GO:0015802: basic amino acid transport5.24E-04
32GO:0048833: specification of floral organ number5.24E-04
33GO:0007051: spindle organization5.24E-04
34GO:0006101: citrate metabolic process5.24E-04
35GO:0019374: galactolipid metabolic process5.24E-04
36GO:0051788: response to misfolded protein5.24E-04
37GO:0048767: root hair elongation6.04E-04
38GO:0009407: toxin catabolic process6.43E-04
39GO:0035436: triose phosphate transmembrane transport8.52E-04
40GO:0015714: phosphoenolpyruvate transport8.52E-04
41GO:0010498: proteasomal protein catabolic process8.52E-04
42GO:0042823: pyridoxal phosphate biosynthetic process1.21E-03
43GO:0001676: long-chain fatty acid metabolic process1.21E-03
44GO:0010116: positive regulation of abscisic acid biosynthetic process1.21E-03
45GO:0002239: response to oomycetes1.21E-03
46GO:0006537: glutamate biosynthetic process1.21E-03
47GO:0010255: glucose mediated signaling pathway1.21E-03
48GO:0015713: phosphoglycerate transport1.62E-03
49GO:0034440: lipid oxidation1.62E-03
50GO:0010109: regulation of photosynthesis1.62E-03
51GO:0019676: ammonia assimilation cycle1.62E-03
52GO:0046345: abscisic acid catabolic process1.62E-03
53GO:0010363: regulation of plant-type hypersensitive response1.62E-03
54GO:0033356: UDP-L-arabinose metabolic process1.62E-03
55GO:0006468: protein phosphorylation1.83E-03
56GO:0010118: stomatal movement1.86E-03
57GO:0006096: glycolytic process1.88E-03
58GO:0006097: glyoxylate cycle2.07E-03
59GO:0007029: endoplasmic reticulum organization2.07E-03
60GO:0010225: response to UV-C2.07E-03
61GO:0006405: RNA export from nucleus2.07E-03
62GO:0000304: response to singlet oxygen2.07E-03
63GO:0009697: salicylic acid biosynthetic process2.07E-03
64GO:0009624: response to nematode2.38E-03
65GO:0002229: defense response to oomycetes2.47E-03
66GO:0018258: protein O-linked glycosylation via hydroxyproline2.55E-03
67GO:0009643: photosynthetic acclimation2.55E-03
68GO:0006014: D-ribose metabolic process2.55E-03
69GO:0000060: protein import into nucleus, translocation2.55E-03
70GO:0045899: positive regulation of RNA polymerase II transcriptional preinitiation complex assembly2.55E-03
71GO:0010942: positive regulation of cell death2.55E-03
72GO:0010405: arabinogalactan protein metabolic process2.55E-03
73GO:0043248: proteasome assembly2.55E-03
74GO:0006796: phosphate-containing compound metabolic process2.55E-03
75GO:0042176: regulation of protein catabolic process2.55E-03
76GO:0010315: auxin efflux2.55E-03
77GO:0009555: pollen development2.58E-03
78GO:0010252: auxin homeostasis2.99E-03
79GO:0006120: mitochondrial electron transport, NADH to ubiquinone3.06E-03
80GO:0000245: spliceosomal complex assembly3.06E-03
81GO:0080086: stamen filament development3.06E-03
82GO:0009615: response to virus3.56E-03
83GO:0000082: G1/S transition of mitotic cell cycle3.61E-03
84GO:1902074: response to salt3.61E-03
85GO:0048528: post-embryonic root development3.61E-03
86GO:1900056: negative regulation of leaf senescence3.61E-03
87GO:0042773: ATP synthesis coupled electron transport3.61E-03
88GO:0019745: pentacyclic triterpenoid biosynthetic process3.61E-03
89GO:0006644: phospholipid metabolic process4.19E-03
90GO:0009061: anaerobic respiration4.19E-03
91GO:0030091: protein repair4.19E-03
92GO:0009408: response to heat4.19E-03
93GO:0006511: ubiquitin-dependent protein catabolic process4.42E-03
94GO:0009657: plastid organization4.79E-03
95GO:0009880: embryonic pattern specification4.79E-03
96GO:0006952: defense response4.79E-03
97GO:0010120: camalexin biosynthetic process4.79E-03
98GO:0010043: response to zinc ion5.36E-03
99GO:0019432: triglyceride biosynthetic process5.43E-03
100GO:0006098: pentose-phosphate shunt5.43E-03
101GO:0009853: photorespiration5.87E-03
102GO:0000387: spliceosomal snRNP assembly6.09E-03
103GO:0030042: actin filament depolymerization6.09E-03
104GO:0048354: mucilage biosynthetic process involved in seed coat development6.09E-03
105GO:0010162: seed dormancy process6.78E-03
106GO:0007064: mitotic sister chromatid cohesion6.78E-03
107GO:0042542: response to hydrogen peroxide7.27E-03
108GO:0015770: sucrose transport7.50E-03
109GO:0009807: lignan biosynthetic process7.50E-03
110GO:0009744: response to sucrose7.57E-03
111GO:0051707: response to other organism7.57E-03
112GO:0006790: sulfur compound metabolic process8.25E-03
113GO:0012501: programmed cell death8.25E-03
114GO:0009735: response to cytokinin8.74E-03
115GO:0006094: gluconeogenesis9.02E-03
116GO:0010540: basipetal auxin transport9.82E-03
117GO:0009266: response to temperature stimulus9.82E-03
118GO:0006486: protein glycosylation1.02E-02
119GO:0009809: lignin biosynthetic process1.02E-02
120GO:0070588: calcium ion transmembrane transport1.06E-02
121GO:0046854: phosphatidylinositol phosphorylation1.06E-02
122GO:0010053: root epidermal cell differentiation1.06E-02
123GO:0009901: anther dehiscence1.06E-02
124GO:0009733: response to auxin1.08E-02
125GO:0007010: cytoskeleton organization1.24E-02
126GO:0009695: jasmonic acid biosynthetic process1.32E-02
127GO:0009620: response to fungus1.33E-02
128GO:0003333: amino acid transmembrane transport1.42E-02
129GO:0016998: cell wall macromolecule catabolic process1.42E-02
130GO:0031408: oxylipin biosynthetic process1.42E-02
131GO:0030433: ubiquitin-dependent ERAD pathway1.51E-02
132GO:0035428: hexose transmembrane transport1.51E-02
133GO:0031348: negative regulation of defense response1.51E-02
134GO:0019748: secondary metabolic process1.51E-02
135GO:0016226: iron-sulfur cluster assembly1.51E-02
136GO:0040007: growth1.61E-02
137GO:0006012: galactose metabolic process1.61E-02
138GO:0009306: protein secretion1.70E-02
139GO:0009751: response to salicylic acid1.76E-02
140GO:0016117: carotenoid biosynthetic process1.80E-02
141GO:0051028: mRNA transport1.80E-02
142GO:0008033: tRNA processing1.91E-02
143GO:0048653: anther development1.91E-02
144GO:0046323: glucose import2.01E-02
145GO:0019252: starch biosynthetic process2.23E-02
146GO:0009851: auxin biosynthetic process2.23E-02
147GO:0009749: response to glucose2.23E-02
148GO:0080156: mitochondrial mRNA modification2.34E-02
149GO:0000302: response to reactive oxygen species2.34E-02
150GO:0032502: developmental process2.45E-02
151GO:0009630: gravitropism2.45E-02
152GO:0010150: leaf senescence2.53E-02
153GO:0030163: protein catabolic process2.56E-02
154GO:0009651: response to salt stress2.71E-02
155GO:0010286: heat acclimation2.80E-02
156GO:0007166: cell surface receptor signaling pathway2.89E-02
157GO:0010029: regulation of seed germination3.16E-02
158GO:0009816: defense response to bacterium, incompatible interaction3.16E-02
159GO:0009607: response to biotic stimulus3.16E-02
160GO:0009737: response to abscisic acid3.22E-02
161GO:0006974: cellular response to DNA damage stimulus3.29E-02
162GO:0006888: ER to Golgi vesicle-mediated transport3.41E-02
163GO:0008219: cell death3.67E-02
164GO:0030244: cellulose biosynthetic process3.67E-02
165GO:0009611: response to wounding3.77E-02
166GO:0009832: plant-type cell wall biogenesis3.80E-02
167GO:0006970: response to osmotic stress4.20E-02
168GO:0045087: innate immune response4.34E-02
169GO:0080167: response to karrikin4.82E-02
170GO:0006631: fatty acid metabolic process4.90E-02
171GO:0055085: transmembrane transport4.91E-02
RankGO TermAdjusted P value
1GO:0003846: 2-acylglycerol O-acyltransferase activity0.00E+00
2GO:0004622: lysophospholipase activity0.00E+00
3GO:0015930: glutamate synthase activity0.00E+00
4GO:0005524: ATP binding1.27E-06
5GO:0010279: indole-3-acetic acid amido synthetase activity3.91E-05
6GO:0000104: succinate dehydrogenase activity6.26E-05
7GO:0051539: 4 iron, 4 sulfur cluster binding9.97E-05
8GO:0016301: kinase activity1.03E-04
9GO:0016041: glutamate synthase (ferredoxin) activity2.36E-04
10GO:0090430: caffeoyl-CoA: alcohol caffeoyl transferase activity2.36E-04
11GO:0005090: Sar guanyl-nucleotide exchange factor activity2.36E-04
12GO:0008171: O-methyltransferase activity4.42E-04
13GO:0004129: cytochrome-c oxidase activity5.11E-04
14GO:0008559: xenobiotic-transporting ATPase activity5.11E-04
15GO:0015036: disulfide oxidoreductase activity5.24E-04
16GO:0050736: O-malonyltransferase activity5.24E-04
17GO:0008517: folic acid transporter activity5.24E-04
18GO:0048531: beta-1,3-galactosyltransferase activity5.24E-04
19GO:0004776: succinate-CoA ligase (GDP-forming) activity5.24E-04
20GO:0003994: aconitate hydratase activity5.24E-04
21GO:0046537: 2,3-bisphosphoglycerate-independent phosphoglycerate mutase activity5.24E-04
22GO:0015152: glucose-6-phosphate transmembrane transporter activity5.24E-04
23GO:0004775: succinate-CoA ligase (ADP-forming) activity5.24E-04
24GO:0015238: drug transmembrane transporter activity6.04E-04
25GO:0015297: antiporter activity8.07E-04
26GO:0004383: guanylate cyclase activity8.52E-04
27GO:0016165: linoleate 13S-lipoxygenase activity8.52E-04
28GO:0016805: dipeptidase activity8.52E-04
29GO:0071917: triose-phosphate transmembrane transporter activity8.52E-04
30GO:0004441: inositol-1,4-bisphosphate 1-phosphatase activity8.52E-04
31GO:0004364: glutathione transferase activity9.97E-04
32GO:0051537: 2 iron, 2 sulfur cluster binding1.16E-03
33GO:0004449: isocitrate dehydrogenase (NAD+) activity1.21E-03
34GO:0042299: lupeol synthase activity1.21E-03
35GO:0015189: L-lysine transmembrane transporter activity1.21E-03
36GO:0008276: protein methyltransferase activity1.21E-03
37GO:0001653: peptide receptor activity1.21E-03
38GO:0004108: citrate (Si)-synthase activity1.21E-03
39GO:0015181: arginine transmembrane transporter activity1.21E-03
40GO:0004298: threonine-type endopeptidase activity1.23E-03
41GO:0004674: protein serine/threonine kinase activity1.32E-03
42GO:0009916: alternative oxidase activity1.62E-03
43GO:0016866: intramolecular transferase activity1.62E-03
44GO:0015120: phosphoglycerate transmembrane transporter activity1.62E-03
45GO:0004737: pyruvate decarboxylase activity1.62E-03
46GO:0010328: auxin influx transmembrane transporter activity1.62E-03
47GO:0005313: L-glutamate transmembrane transporter activity1.62E-03
48GO:0004031: aldehyde oxidase activity1.62E-03
49GO:0050302: indole-3-acetaldehyde oxidase activity1.62E-03
50GO:0005496: steroid binding2.07E-03
51GO:0051538: 3 iron, 4 sulfur cluster binding2.07E-03
52GO:0045549: 9-cis-epoxycarotenoid dioxygenase activity2.07E-03
53GO:0010294: abscisic acid glucosyltransferase activity2.07E-03
54GO:0015145: monosaccharide transmembrane transporter activity2.07E-03
55GO:0008177: succinate dehydrogenase (ubiquinone) activity2.07E-03
56GO:0005509: calcium ion binding2.22E-03
57GO:0008137: NADH dehydrogenase (ubiquinone) activity2.47E-03
58GO:0036402: proteasome-activating ATPase activity2.55E-03
59GO:0030976: thiamine pyrophosphate binding2.55E-03
60GO:1990714: hydroxyproline O-galactosyltransferase activity2.55E-03
61GO:0004332: fructose-bisphosphate aldolase activity2.55E-03
62GO:0031593: polyubiquitin binding2.55E-03
63GO:0016462: pyrophosphatase activity2.55E-03
64GO:0004747: ribokinase activity3.06E-03
65GO:0004144: diacylglycerol O-acyltransferase activity3.06E-03
66GO:0003978: UDP-glucose 4-epimerase activity3.06E-03
67GO:0008113: peptide-methionine (S)-S-oxide reductase activity3.06E-03
68GO:0051020: GTPase binding3.06E-03
69GO:0033743: peptide-methionine (R)-S-oxide reductase activity3.06E-03
70GO:0008441: 3'(2'),5'-bisphosphate nucleotidase activity3.06E-03
71GO:0102391: decanoate--CoA ligase activity3.06E-03
72GO:0004620: phospholipase activity3.61E-03
73GO:0004467: long-chain fatty acid-CoA ligase activity3.61E-03
74GO:0016831: carboxy-lyase activity3.61E-03
75GO:0008506: sucrose:proton symporter activity3.61E-03
76GO:0008235: metalloexopeptidase activity3.61E-03
77GO:0004427: inorganic diphosphatase activity3.61E-03
78GO:0004033: aldo-keto reductase (NADP) activity4.19E-03
79GO:0030247: polysaccharide binding4.19E-03
80GO:0008865: fructokinase activity4.19E-03
81GO:0005096: GTPase activator activity4.87E-03
82GO:0030145: manganese ion binding5.36E-03
83GO:0008194: UDP-glycosyltransferase activity5.49E-03
84GO:0047617: acyl-CoA hydrolase activity6.09E-03
85GO:0030955: potassium ion binding6.09E-03
86GO:0004743: pyruvate kinase activity6.09E-03
87GO:0045309: protein phosphorylated amino acid binding6.09E-03
88GO:0015174: basic amino acid transmembrane transporter activity6.09E-03
89GO:0042626: ATPase activity, coupled to transmembrane movement of substances6.46E-03
90GO:0030234: enzyme regulator activity6.78E-03
91GO:0004177: aminopeptidase activity7.50E-03
92GO:0019904: protein domain specific binding7.50E-03
93GO:0000287: magnesium ion binding8.11E-03
94GO:0008378: galactosyltransferase activity8.25E-03
95GO:0010329: auxin efflux transmembrane transporter activity9.02E-03
96GO:0005315: inorganic phosphate transmembrane transporter activity9.02E-03
97GO:0005388: calcium-transporting ATPase activity9.02E-03
98GO:0004022: alcohol dehydrogenase (NAD) activity9.02E-03
99GO:0046872: metal ion binding1.06E-02
100GO:0017025: TBP-class protein binding1.06E-02
101GO:0008233: peptidase activity1.07E-02
102GO:0051536: iron-sulfur cluster binding1.24E-02
103GO:0003954: NADH dehydrogenase activity1.24E-02
104GO:0043424: protein histidine kinase binding1.32E-02
105GO:0080043: quercetin 3-O-glucosyltransferase activity1.33E-02
106GO:0080044: quercetin 7-O-glucosyltransferase activity1.33E-02
107GO:0051082: unfolded protein binding1.46E-02
108GO:0022891: substrate-specific transmembrane transporter activity1.61E-02
109GO:0005507: copper ion binding1.71E-02
110GO:0016758: transferase activity, transferring hexosyl groups1.78E-02
111GO:0005516: calmodulin binding1.85E-02
112GO:0009055: electron carrier activity1.96E-02
113GO:0005199: structural constituent of cell wall2.01E-02
114GO:0008536: Ran GTPase binding2.01E-02
115GO:0010181: FMN binding2.12E-02
116GO:0005355: glucose transmembrane transporter activity2.12E-02
117GO:0050662: coenzyme binding2.12E-02
118GO:0048038: quinone binding2.34E-02
119GO:0004197: cysteine-type endopeptidase activity2.45E-02
120GO:0016757: transferase activity, transferring glycosyl groups2.78E-02
121GO:0005200: structural constituent of cytoskeleton2.80E-02
122GO:0051213: dioxygenase activity3.04E-02
123GO:0009931: calcium-dependent protein serine/threonine kinase activity3.29E-02
124GO:0003824: catalytic activity3.29E-02
125GO:0005215: transporter activity3.33E-02
126GO:0004683: calmodulin-dependent protein kinase activity3.41E-02
127GO:0008757: S-adenosylmethionine-dependent methyltransferase activity3.54E-02
128GO:0004222: metalloendopeptidase activity3.93E-02
129GO:0050897: cobalt ion binding4.07E-02
130GO:0016614: oxidoreductase activity, acting on CH-OH group of donors4.07E-02
131GO:0016491: oxidoreductase activity4.28E-02
132GO:0016706: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors4.34E-02
133GO:0003697: single-stranded DNA binding4.34E-02
134GO:0050660: flavin adenine dinucleotide binding4.51E-02
RankGO TermAdjusted P value
1GO:0046862: chromoplast membrane0.00E+00
2GO:0005829: cytosol1.27E-07
3GO:0005886: plasma membrane6.47E-07
4GO:0000502: proteasome complex1.79E-05
5GO:0005749: mitochondrial respiratory chain complex II, succinate dehydrogenase complex (ubiquinone)2.12E-04
6GO:0008540: proteasome regulatory particle, base subcomplex3.78E-04
7GO:0031314: extrinsic component of mitochondrial inner membrane5.24E-04
8GO:0071010: prespliceosome5.24E-04
9GO:0016020: membrane7.32E-04
10GO:0034719: SMN-Sm protein complex8.52E-04
11GO:0009530: primary cell wall8.52E-04
12GO:0005751: mitochondrial respiratory chain complex IV8.52E-04
13GO:0046861: glyoxysomal membrane8.52E-04
14GO:0034715: pICln-Sm protein complex8.52E-04
15GO:0005794: Golgi apparatus8.67E-04
16GO:0045271: respiratory chain complex I1.12E-03
17GO:0005839: proteasome core complex1.23E-03
18GO:0005774: vacuolar membrane1.43E-03
19GO:0005682: U5 snRNP1.62E-03
20GO:0005747: mitochondrial respiratory chain complex I1.96E-03
21GO:0005687: U4 snRNP2.07E-03
22GO:0097526: spliceosomal tri-snRNP complex2.07E-03
23GO:0005746: mitochondrial respiratory chain2.07E-03
24GO:0000243: commitment complex2.55E-03
25GO:0005689: U12-type spliceosomal complex3.06E-03
26GO:0031597: cytosolic proteasome complex3.06E-03
27GO:0031595: nuclear proteasome complex3.61E-03
28GO:0009506: plasmodesma3.80E-03
29GO:0009536: plastid3.90E-03
30GO:0005739: mitochondrion3.91E-03
31GO:0045273: respiratory chain complex II4.19E-03
32GO:0009514: glyoxysome4.79E-03
33GO:0019773: proteasome core complex, alpha-subunit complex4.79E-03
34GO:0005685: U1 snRNP5.43E-03
35GO:0071011: precatalytic spliceosome6.09E-03
36GO:0005686: U2 snRNP6.78E-03
37GO:0008541: proteasome regulatory particle, lid subcomplex7.50E-03
38GO:0071013: catalytic step 2 spliceosome7.50E-03
39GO:0019013: viral nucleocapsid9.02E-03
40GO:0031966: mitochondrial membrane9.52E-03
41GO:0005750: mitochondrial respiratory chain complex III9.82E-03
42GO:0030176: integral component of endoplasmic reticulum membrane1.06E-02
43GO:0005758: mitochondrial intermembrane space1.24E-02
44GO:0070469: respiratory chain1.32E-02
45GO:0016021: integral component of membrane1.37E-02
46GO:0015629: actin cytoskeleton1.61E-02
47GO:0010287: plastoglobule1.73E-02
48GO:0005759: mitochondrial matrix2.30E-02
49GO:0005773: vacuole2.68E-02
50GO:0005778: peroxisomal membrane2.80E-02
51GO:0030529: intracellular ribonucleoprotein complex3.04E-02
52GO:0005643: nuclear pore3.67E-02
53GO:0005618: cell wall3.68E-02
54GO:0005737: cytoplasm3.95E-02
55GO:0000325: plant-type vacuole4.07E-02
56GO:0005777: peroxisome4.34E-02
57GO:0005783: endoplasmic reticulum4.63E-02
58GO:0031969: chloroplast membrane4.82E-02
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Gene type



Gene DE type