Gene type: Transcription factor Metabolic gene Others DE type: Up Down Slightly_up Slightly_down Mixeded Others

GO Enrichment Analysis of Co-expressed Genes with

AT3G48760

GO-BP
GO-MF
GO-CC
RankGO TermAdjusted P value
1GO:1903798: regulation of production of miRNAs involved in gene silencing by miRNA0.00E+00
2GO:0036258: multivesicular body assembly0.00E+00
3GO:0070676: intralumenal vesicle formation6.79E-07
4GO:0046467: membrane lipid biosynthetic process3.25E-05
5GO:0031338: regulation of vesicle fusion3.25E-05
6GO:0050792: regulation of viral process3.25E-05
7GO:1900036: positive regulation of cellular response to heat3.25E-05
8GO:0046740: transport of virus in host, cell to cell8.18E-05
9GO:2000072: regulation of defense response to fungus, incompatible interaction8.18E-05
10GO:0090630: activation of GTPase activity1.42E-04
11GO:0043044: ATP-dependent chromatin remodeling1.42E-04
12GO:0006556: S-adenosylmethionine biosynthetic process1.42E-04
13GO:0010071: root meristem specification2.11E-04
14GO:1901000: regulation of response to salt stress2.11E-04
15GO:0045926: negative regulation of growth5.36E-04
16GO:0010199: organ boundary specification between lateral organs and the meristem5.36E-04
17GO:0015937: coenzyme A biosynthetic process6.27E-04
18GO:0010050: vegetative phase change6.27E-04
19GO:0010078: maintenance of root meristem identity7.22E-04
20GO:0010492: maintenance of shoot apical meristem identity7.22E-04
21GO:0040029: regulation of gene expression, epigenetic7.22E-04
22GO:0009819: drought recovery7.22E-04
23GO:0009821: alkaloid biosynthetic process9.20E-04
24GO:0008202: steroid metabolic process1.02E-03
25GO:0043069: negative regulation of programmed cell death1.13E-03
26GO:0032436: positive regulation of proteasomal ubiquitin-dependent protein catabolic process1.47E-03
27GO:0006829: zinc II ion transport1.47E-03
28GO:0007034: vacuolar transport1.60E-03
29GO:0048440: carpel development1.60E-03
30GO:0010053: root epidermal cell differentiation1.72E-03
31GO:0010187: negative regulation of seed germination1.99E-03
32GO:0006730: one-carbon metabolic process2.40E-03
33GO:0009693: ethylene biosynthetic process2.55E-03
34GO:0006468: protein phosphorylation2.77E-03
35GO:0080022: primary root development3.00E-03
36GO:0000226: microtubule cytoskeleton organization3.00E-03
37GO:0048366: leaf development3.19E-03
38GO:0055072: iron ion homeostasis3.47E-03
39GO:0030163: protein catabolic process3.97E-03
40GO:0071281: cellular response to iron ion3.97E-03
41GO:0006904: vesicle docking involved in exocytosis4.32E-03
42GO:0016579: protein deubiquitination4.49E-03
43GO:0009615: response to virus4.67E-03
44GO:0006950: response to stress5.22E-03
45GO:0009867: jasmonic acid mediated signaling pathway6.60E-03
46GO:0045087: innate immune response6.60E-03
47GO:0034599: cellular response to oxidative stress6.80E-03
48GO:0030001: metal ion transport7.22E-03
49GO:0006887: exocytosis7.43E-03
50GO:0008283: cell proliferation7.87E-03
51GO:0009908: flower development7.91E-03
52GO:0000209: protein polyubiquitination8.09E-03
53GO:0031347: regulation of defense response8.99E-03
54GO:0042787: protein ubiquitination involved in ubiquitin-dependent protein catabolic process8.99E-03
55GO:0006417: regulation of translation1.04E-02
56GO:0048367: shoot system development1.11E-02
57GO:0006511: ubiquitin-dependent protein catabolic process1.19E-02
58GO:0016569: covalent chromatin modification1.19E-02
59GO:0009742: brassinosteroid mediated signaling pathway1.29E-02
60GO:0043161: proteasome-mediated ubiquitin-dependent protein catabolic process1.98E-02
61GO:0006470: protein dephosphorylation2.01E-02
62GO:0007166: cell surface receptor signaling pathway2.01E-02
63GO:0010468: regulation of gene expression2.07E-02
64GO:0015031: protein transport2.26E-02
65GO:0016192: vesicle-mediated transport3.02E-02
66GO:0046777: protein autophosphorylation3.05E-02
67GO:0006886: intracellular protein transport3.38E-02
68GO:0007275: multicellular organism development3.50E-02
69GO:0006869: lipid transport3.53E-02
70GO:0007165: signal transduction3.70E-02
71GO:0009408: response to heat3.84E-02
72GO:0006397: mRNA processing3.96E-02
73GO:0048364: root development3.96E-02
74GO:0009793: embryo development ending in seed dormancy4.11E-02
75GO:0009734: auxin-activated signaling pathway4.90E-02
RankGO TermAdjusted P value
1GO:0004594: pantothenate kinase activity8.18E-05
2GO:0004478: methionine adenosyltransferase activity1.42E-04
3GO:0017137: Rab GTPase binding3.65E-04
4GO:0005515: protein binding4.17E-04
5GO:0004712: protein serine/threonine/tyrosine kinase activity4.81E-04
6GO:0035091: phosphatidylinositol binding6.09E-04
7GO:0008353: RNA polymerase II carboxy-terminal domain kinase activity8.20E-04
8GO:0008142: oxysterol binding8.20E-04
9GO:0004713: protein tyrosine kinase activity1.13E-03
10GO:0031624: ubiquitin conjugating enzyme binding1.60E-03
11GO:0043130: ubiquitin binding1.99E-03
12GO:0008094: DNA-dependent ATPase activity2.26E-03
13GO:0036459: thiol-dependent ubiquitinyl hydrolase activity2.26E-03
14GO:0016301: kinase activity3.12E-03
15GO:0046873: metal ion transmembrane transporter activity3.15E-03
16GO:0008536: Ran GTPase binding3.15E-03
17GO:0004843: thiol-dependent ubiquitin-specific protease activity3.63E-03
18GO:0005524: ATP binding4.02E-03
19GO:0051213: dioxygenase activity4.67E-03
20GO:0005096: GTPase activator activity5.80E-03
21GO:0004693: cyclin-dependent protein serine/threonine kinase activity5.99E-03
22GO:0016706: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors6.60E-03
23GO:0016874: ligase activity1.19E-02
24GO:0005516: calmodulin binding1.32E-02
25GO:0004386: helicase activity1.32E-02
26GO:0004675: transmembrane receptor protein serine/threonine kinase activity1.74E-02
27GO:0008017: microtubule binding1.89E-02
28GO:0008270: zinc ion binding2.16E-02
29GO:0016491: oxidoreductase activity2.34E-02
30GO:0004842: ubiquitin-protein transferase activity2.46E-02
31GO:0046982: protein heterodimerization activity2.46E-02
32GO:0003682: chromatin binding2.60E-02
33GO:0004672: protein kinase activity2.62E-02
34GO:0003729: mRNA binding2.65E-02
35GO:0061630: ubiquitin protein ligase activity3.02E-02
36GO:0042803: protein homodimerization activity3.42E-02
37GO:0004722: protein serine/threonine phosphatase activity3.53E-02
38GO:0046872: metal ion binding3.99E-02
39GO:0008289: lipid binding4.85E-02
RankGO TermAdjusted P value
1GO:0099738: cell cortex region0.00E+00
2GO:0070062: extracellular exosome2.11E-04
3GO:0000813: ESCRT I complex3.65E-04
4GO:0005771: multivesicular body4.48E-04
5GO:0000815: ESCRT III complex5.36E-04
6GO:0016604: nuclear body1.02E-03
7GO:0005770: late endosome3.15E-03
8GO:0000145: exocyst3.80E-03
9GO:0005829: cytosol4.75E-03
10GO:0000151: ubiquitin ligase complex5.60E-03
11GO:0019005: SCF ubiquitin ligase complex5.60E-03
12GO:0031902: late endosome membrane7.43E-03
13GO:0005886: plasma membrane7.44E-03
14GO:0005681: spliceosomal complex1.09E-02
15GO:0010008: endosome membrane1.11E-02
16GO:0012505: endomembrane system1.22E-02
17GO:0009706: chloroplast inner membrane1.24E-02
18GO:0005773: vacuole2.50E-02
19GO:0005874: microtubule2.84E-02
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Gene type



Gene DE type