Gene type: Transcription factor Metabolic gene Others DE type: Up Down Slightly_up Slightly_down Mixeded Others

GO Enrichment Analysis of Co-expressed Genes with

AT3G48730

GO-BP
GO-MF
GO-CC
RankGO TermAdjusted P value
1GO:0032194: ubiquinone biosynthetic process via 3,4-dihydroxy-5-polyprenylbenzoate0.00E+00
2GO:0090071: negative regulation of ribosome biogenesis0.00E+00
3GO:2000121: regulation of removal of superoxide radicals0.00E+00
4GO:0006223: uracil salvage0.00E+00
5GO:0042407: cristae formation0.00E+00
6GO:0042821: pyridoxal biosynthetic process0.00E+00
7GO:0070272: proton-transporting ATP synthase complex biogenesis0.00E+00
8GO:0097164: ammonium ion metabolic process0.00E+00
9GO:0042820: vitamin B6 catabolic process0.00E+00
10GO:0015882: L-ascorbic acid transport0.00E+00
11GO:0006399: tRNA metabolic process0.00E+00
12GO:0018160: peptidyl-pyrromethane cofactor linkage0.00E+00
13GO:0070125: mitochondrial translational elongation0.00E+00
14GO:0009658: chloroplast organization1.89E-13
15GO:0006412: translation4.14E-11
16GO:0009735: response to cytokinin2.90E-10
17GO:0015995: chlorophyll biosynthetic process3.88E-10
18GO:0032544: plastid translation2.56E-09
19GO:0042254: ribosome biogenesis2.25E-08
20GO:0010027: thylakoid membrane organization2.43E-07
21GO:1901259: chloroplast rRNA processing5.48E-06
22GO:0015979: photosynthesis1.20E-05
23GO:0042255: ribosome assembly1.31E-05
24GO:0006353: DNA-templated transcription, termination1.31E-05
25GO:0090391: granum assembly2.13E-05
26GO:0006783: heme biosynthetic process2.59E-05
27GO:0006782: protoporphyrinogen IX biosynthetic process4.47E-05
28GO:0051085: chaperone mediated protein folding requiring cofactor4.69E-05
29GO:0032502: developmental process5.67E-05
30GO:0006655: phosphatidylglycerol biosynthetic process1.86E-04
31GO:0042372: phylloquinone biosynthetic process2.52E-04
32GO:0009306: protein secretion3.19E-04
33GO:0034337: RNA folding3.67E-04
34GO:0006434: seryl-tRNA aminoacylation3.67E-04
35GO:0009443: pyridoxal 5'-phosphate salvage3.67E-04
36GO:0006438: valyl-tRNA aminoacylation3.67E-04
37GO:0097056: selenocysteinyl-tRNA(Sec) biosynthetic process3.67E-04
38GO:1904966: positive regulation of vitamin E biosynthetic process3.67E-04
39GO:1904964: positive regulation of phytol biosynthetic process3.67E-04
40GO:0042371: vitamin K biosynthetic process3.67E-04
41GO:0006436: tryptophanyl-tRNA aminoacylation3.67E-04
42GO:1902458: positive regulation of stomatal opening3.67E-04
43GO:0010028: xanthophyll cycle3.67E-04
44GO:0048564: photosystem I assembly4.09E-04
45GO:0071482: cellular response to light stimulus5.01E-04
46GO:0006729: tetrahydrobiopterin biosynthetic process8.00E-04
47GO:1903426: regulation of reactive oxygen species biosynthetic process8.00E-04
48GO:0006568: tryptophan metabolic process8.00E-04
49GO:0043039: tRNA aminoacylation8.00E-04
50GO:1902326: positive regulation of chlorophyll biosynthetic process8.00E-04
51GO:0070981: L-asparagine biosynthetic process8.00E-04
52GO:0006423: cysteinyl-tRNA aminoacylation8.00E-04
53GO:0018026: peptidyl-lysine monomethylation8.00E-04
54GO:0080183: response to photooxidative stress8.00E-04
55GO:0006529: asparagine biosynthetic process8.00E-04
56GO:0008616: queuosine biosynthetic process8.00E-04
57GO:0006352: DNA-templated transcription, initiation9.51E-04
58GO:0042742: defense response to bacterium1.00E-03
59GO:0016024: CDP-diacylglycerol biosynthetic process1.08E-03
60GO:0045037: protein import into chloroplast stroma1.08E-03
61GO:0006518: peptide metabolic process1.29E-03
62GO:0051604: protein maturation1.29E-03
63GO:0006760: folic acid-containing compound metabolic process1.29E-03
64GO:0009790: embryo development1.79E-03
65GO:0006241: CTP biosynthetic process1.87E-03
66GO:0009052: pentose-phosphate shunt, non-oxidative branch1.87E-03
67GO:0006165: nucleoside diphosphate phosphorylation1.87E-03
68GO:0006228: UTP biosynthetic process1.87E-03
69GO:0006986: response to unfolded protein1.87E-03
70GO:0080158: chloroplast ribulose bisphosphate carboxylase complex biogenesis1.87E-03
71GO:2001141: regulation of RNA biosynthetic process1.87E-03
72GO:0019344: cysteine biosynthetic process1.91E-03
73GO:0006633: fatty acid biosynthetic process2.00E-03
74GO:0045454: cell redox homeostasis2.05E-03
75GO:0006418: tRNA aminoacylation for protein translation2.11E-03
76GO:0006183: GTP biosynthetic process2.51E-03
77GO:0046656: folic acid biosynthetic process2.51E-03
78GO:0030007: cellular potassium ion homeostasis2.51E-03
79GO:0044206: UMP salvage2.51E-03
80GO:0006021: inositol biosynthetic process2.51E-03
81GO:0071483: cellular response to blue light2.51E-03
82GO:0007005: mitochondrion organization2.54E-03
83GO:0008380: RNA splicing3.03E-03
84GO:0034052: positive regulation of plant-type hypersensitive response3.21E-03
85GO:0043097: pyrimidine nucleoside salvage3.21E-03
86GO:0010236: plastoquinone biosynthetic process3.21E-03
87GO:0045038: protein import into chloroplast thylakoid membrane3.21E-03
88GO:0006796: phosphate-containing compound metabolic process3.96E-03
89GO:0042793: transcription from plastid promoter3.96E-03
90GO:0010190: cytochrome b6f complex assembly3.96E-03
91GO:0006086: acetyl-CoA biosynthetic process from pyruvate3.96E-03
92GO:0006206: pyrimidine nucleobase metabolic process3.96E-03
93GO:0032973: amino acid export3.96E-03
94GO:0009117: nucleotide metabolic process3.96E-03
95GO:0046855: inositol phosphate dephosphorylation3.96E-03
96GO:0009955: adaxial/abaxial pattern specification4.78E-03
97GO:0042026: protein refolding4.78E-03
98GO:0017148: negative regulation of translation4.78E-03
99GO:0046654: tetrahydrofolate biosynthetic process4.78E-03
100GO:0010019: chloroplast-nucleus signaling pathway4.78E-03
101GO:0010555: response to mannitol4.78E-03
102GO:0009772: photosynthetic electron transport in photosystem II5.64E-03
103GO:0043090: amino acid import5.64E-03
104GO:0010196: nonphotochemical quenching5.64E-03
105GO:0006826: iron ion transport5.64E-03
106GO:0006400: tRNA modification5.64E-03
107GO:0052543: callose deposition in cell wall6.56E-03
108GO:0009642: response to light intensity6.56E-03
109GO:0043068: positive regulation of programmed cell death6.56E-03
110GO:0006605: protein targeting6.56E-03
111GO:0006875: cellular metal ion homeostasis6.56E-03
112GO:2000070: regulation of response to water deprivation6.56E-03
113GO:0009793: embryo development ending in seed dormancy7.35E-03
114GO:0009657: plastid organization7.52E-03
115GO:0017004: cytochrome complex assembly7.52E-03
116GO:0009627: systemic acquired resistance7.59E-03
117GO:0098656: anion transmembrane transport8.54E-03
118GO:0009245: lipid A biosynthetic process8.54E-03
119GO:0080144: amino acid homeostasis8.54E-03
120GO:0034765: regulation of ion transmembrane transport8.54E-03
121GO:0048481: plant ovule development8.88E-03
122GO:0043067: regulation of programmed cell death9.60E-03
123GO:0006779: porphyrin-containing compound biosynthetic process9.60E-03
124GO:0031425: chloroplast RNA processing9.60E-03
125GO:0019538: protein metabolic process1.07E-02
126GO:0006535: cysteine biosynthetic process from serine1.07E-02
127GO:0045036: protein targeting to chloroplast1.07E-02
128GO:0009089: lysine biosynthetic process via diaminopimelate1.19E-02
129GO:0009073: aromatic amino acid family biosynthetic process1.19E-02
130GO:0043085: positive regulation of catalytic activity1.19E-02
131GO:0006415: translational termination1.19E-02
132GO:0006457: protein folding1.27E-02
133GO:0006790: sulfur compound metabolic process1.31E-02
134GO:0006541: glutamine metabolic process1.56E-02
135GO:0010207: photosystem II assembly1.56E-02
136GO:0010020: chloroplast fission1.56E-02
137GO:0019253: reductive pentose-phosphate cycle1.56E-02
138GO:0019853: L-ascorbic acid biosynthetic process1.69E-02
139GO:0010039: response to iron ion1.69E-02
140GO:0090351: seedling development1.69E-02
141GO:0009409: response to cold1.69E-02
142GO:0046854: phosphatidylinositol phosphorylation1.69E-02
143GO:0042538: hyperosmotic salinity response1.83E-02
144GO:0009116: nucleoside metabolic process1.96E-02
145GO:0000027: ribosomal large subunit assembly1.96E-02
146GO:0061077: chaperone-mediated protein folding2.25E-02
147GO:0051260: protein homooligomerization2.25E-02
148GO:0009814: defense response, incompatible interaction2.40E-02
149GO:0080167: response to karrikin2.49E-02
150GO:0009411: response to UV2.56E-02
151GO:0016117: carotenoid biosynthetic process2.87E-02
152GO:0042335: cuticle development3.04E-02
153GO:0008033: tRNA processing3.04E-02
154GO:0000413: protein peptidyl-prolyl isomerization3.04E-02
155GO:0009741: response to brassinosteroid3.20E-02
156GO:0006662: glycerol ether metabolic process3.20E-02
157GO:0010197: polar nucleus fusion3.20E-02
158GO:0009646: response to absence of light3.37E-02
159GO:0008654: phospholipid biosynthetic process3.55E-02
160GO:1901657: glycosyl compound metabolic process4.08E-02
161GO:0009567: double fertilization forming a zygote and endosperm4.27E-02
162GO:0010286: heat acclimation4.45E-02
163GO:0071805: potassium ion transmembrane transport4.45E-02
164GO:0006413: translational initiation4.51E-02
RankGO TermAdjusted P value
1GO:0009974: zeinoxanthin epsilon hydroxylase activity0.00E+00
2GO:0033728: divinyl chlorophyllide a 8-vinyl-reductase activity0.00E+00
3GO:0050236: pyridoxine:NADP 4-dehydrogenase activity0.00E+00
4GO:0015269: calcium-activated potassium channel activity0.00E+00
5GO:0000979: RNA polymerase II core promoter sequence-specific DNA binding0.00E+00
6GO:0051744: 3,8-divinyl protochlorophyllide a 8-vinyl reductase activity0.00E+00
7GO:0046428: 1,4-dihydroxy-2-naphthoate octaprenyltransferase activity0.00E+00
8GO:0004853: uroporphyrinogen decarboxylase activity0.00E+00
9GO:0004418: hydroxymethylbilane synthase activity0.00E+00
10GO:0015229: L-ascorbic acid transporter activity0.00E+00
11GO:0008756: o-succinylbenzoate-CoA ligase activity0.00E+00
12GO:0004314: [acyl-carrier-protein] S-malonyltransferase activity0.00E+00
13GO:0015038: glutathione disulfide oxidoreductase activity0.00E+00
14GO:0046408: chlorophyll synthetase activity0.00E+00
15GO:0019843: rRNA binding2.54E-17
16GO:0003735: structural constituent of ribosome2.10E-13
17GO:0070402: NADPH binding2.13E-05
18GO:0016851: magnesium chelatase activity4.69E-05
19GO:0016987: sigma factor activity8.29E-05
20GO:0001053: plastid sigma factor activity8.29E-05
21GO:0016462: pyrophosphatase activity1.86E-04
22GO:0051920: peroxiredoxin activity2.52E-04
23GO:0003727: single-stranded RNA binding3.19E-04
24GO:0030794: (S)-coclaurine-N-methyltransferase activity3.67E-04
25GO:0004425: indole-3-glycerol-phosphate synthase activity3.67E-04
26GO:0050567: glutaminyl-tRNA synthase (glutamine-hydrolyzing) activity3.67E-04
27GO:0004828: serine-tRNA ligase activity3.67E-04
28GO:0004071: aspartate-ammonia ligase activity3.67E-04
29GO:0009374: biotin binding3.67E-04
30GO:0008124: 4-alpha-hydroxytetrahydrobiopterin dehydratase activity3.67E-04
31GO:0015088: copper uptake transmembrane transporter activity3.67E-04
32GO:0004832: valine-tRNA ligase activity3.67E-04
33GO:0004830: tryptophan-tRNA ligase activity3.67E-04
34GO:0010347: L-galactose-1-phosphate phosphatase activity3.67E-04
35GO:0016209: antioxidant activity4.09E-04
36GO:0003755: peptidyl-prolyl cis-trans isomerase activity4.71E-04
37GO:0003723: RNA binding4.81E-04
38GO:0009977: proton motive force dependent protein transmembrane transporter activity8.00E-04
39GO:0102083: 7,8-dihydromonapterin aldolase activity8.00E-04
40GO:0052832: inositol monophosphate 3-phosphatase activity8.00E-04
41GO:0004312: fatty acid synthase activity8.00E-04
42GO:0004817: cysteine-tRNA ligase activity8.00E-04
43GO:0008479: queuine tRNA-ribosyltransferase activity8.00E-04
44GO:0000774: adenyl-nucleotide exchange factor activity8.00E-04
45GO:0008934: inositol monophosphate 1-phosphatase activity8.00E-04
46GO:0016630: protochlorophyllide reductase activity8.00E-04
47GO:0052833: inositol monophosphate 4-phosphatase activity8.00E-04
48GO:0004150: dihydroneopterin aldolase activity8.00E-04
49GO:0008839: 4-hydroxy-tetrahydrodipicolinate reductase8.00E-04
50GO:0004066: asparagine synthase (glutamine-hydrolyzing) activity8.00E-04
51GO:0051082: unfolded protein binding1.01E-03
52GO:0004148: dihydrolipoyl dehydrogenase activity1.29E-03
53GO:0004751: ribose-5-phosphate isomerase activity1.29E-03
54GO:0004315: 3-oxoacyl-[acyl-carrier-protein] synthase activity1.29E-03
55GO:0001872: (1->3)-beta-D-glucan binding1.87E-03
56GO:0004742: dihydrolipoyllysine-residue acetyltransferase activity1.87E-03
57GO:0035529: NADH pyrophosphatase activity1.87E-03
58GO:0016149: translation release factor activity, codon specific1.87E-03
59GO:0004550: nucleoside diphosphate kinase activity1.87E-03
60GO:0043023: ribosomal large subunit binding1.87E-03
61GO:0008097: 5S rRNA binding1.87E-03
62GO:0005528: FK506 binding1.91E-03
63GO:0051087: chaperone binding2.11E-03
64GO:0004845: uracil phosphoribosyltransferase activity2.51E-03
65GO:0004045: aminoacyl-tRNA hydrolase activity2.51E-03
66GO:0043495: protein anchor2.51E-03
67GO:0003841: 1-acylglycerol-3-phosphate O-acyltransferase activity2.51E-03
68GO:0004659: prenyltransferase activity2.51E-03
69GO:0016279: protein-lysine N-methyltransferase activity2.51E-03
70GO:0003959: NADPH dehydrogenase activity3.21E-03
71GO:0030414: peptidase inhibitor activity3.21E-03
72GO:0004040: amidase activity3.21E-03
73GO:0003989: acetyl-CoA carboxylase activity3.21E-03
74GO:0004812: aminoacyl-tRNA ligase activity3.26E-03
75GO:0003690: double-stranded DNA binding3.62E-03
76GO:0015271: outward rectifier potassium channel activity3.96E-03
77GO:0004605: phosphatidate cytidylyltransferase activity3.96E-03
78GO:0031177: phosphopantetheine binding3.96E-03
79GO:0016208: AMP binding3.96E-03
80GO:0004601: peroxidase activity4.50E-03
81GO:0004124: cysteine synthase activity4.78E-03
82GO:0008441: 3'(2'),5'-bisphosphate nucleotidase activity4.78E-03
83GO:0004849: uridine kinase activity4.78E-03
84GO:0000035: acyl binding4.78E-03
85GO:0004427: inorganic diphosphatase activity5.64E-03
86GO:0019899: enzyme binding5.64E-03
87GO:0016491: oxidoreductase activity5.68E-03
88GO:0000036: ACP phosphopantetheine attachment site binding involved in fatty acid biosynthetic process6.56E-03
89GO:0004033: aldo-keto reductase (NADP) activity6.56E-03
90GO:0003729: mRNA binding7.38E-03
91GO:0005267: potassium channel activity7.52E-03
92GO:0003747: translation release factor activity8.54E-03
93GO:0042803: protein homodimerization activity8.81E-03
94GO:0015450: P-P-bond-hydrolysis-driven protein transmembrane transporter activity8.88E-03
95GO:0005381: iron ion transmembrane transporter activity9.60E-03
96GO:0008047: enzyme activator activity1.07E-02
97GO:0003746: translation elongation factor activity1.13E-02
98GO:0044183: protein binding involved in protein folding1.19E-02
99GO:0005315: inorganic phosphate transmembrane transporter activity1.43E-02
100GO:0031072: heat shock protein binding1.43E-02
101GO:0051119: sugar transmembrane transporter activity1.69E-02
102GO:0003899: DNA-directed 5'-3' RNA polymerase activity1.97E-02
103GO:0043424: protein histidine kinase binding2.11E-02
104GO:0005216: ion channel activity2.11E-02
105GO:0004176: ATP-dependent peptidase activity2.25E-02
106GO:0005509: calcium ion binding2.37E-02
107GO:0022891: substrate-specific transmembrane transporter activity2.56E-02
108GO:0008514: organic anion transmembrane transporter activity2.71E-02
109GO:0047134: protein-disulfide reductase activity2.87E-02
110GO:0015035: protein disulfide oxidoreductase activity2.89E-02
111GO:0016538: cyclin-dependent protein serine/threonine kinase regulator activity3.20E-02
112GO:0008080: N-acetyltransferase activity3.20E-02
113GO:0004791: thioredoxin-disulfide reductase activity3.37E-02
114GO:0010181: FMN binding3.37E-02
115GO:0016671: oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor4.08E-02
116GO:0008565: protein transporter activity4.19E-02
117GO:0016722: oxidoreductase activity, oxidizing metal ions4.45E-02
118GO:0005507: copper ion binding4.45E-02
119GO:0008237: metallopeptidase activity4.45E-02
RankGO TermAdjusted P value
1GO:0044391: ribosomal subunit0.00E+00
2GO:0009507: chloroplast1.23E-95
3GO:0009570: chloroplast stroma1.70E-64
4GO:0009941: chloroplast envelope1.80E-56
5GO:0009579: thylakoid7.70E-34
6GO:0009535: chloroplast thylakoid membrane1.44E-29
7GO:0005840: ribosome4.75E-15
8GO:0009543: chloroplast thylakoid lumen2.73E-14
9GO:0031977: thylakoid lumen8.10E-14
10GO:0009536: plastid2.65E-10
11GO:0009654: photosystem II oxygen evolving complex4.56E-09
12GO:0009534: chloroplast thylakoid1.81E-08
13GO:0019898: extrinsic component of membrane1.93E-06
14GO:0033281: TAT protein transport complex2.13E-05
15GO:0031969: chloroplast membrane5.98E-05
16GO:0009508: plastid chromosome8.61E-05
17GO:0009706: chloroplast inner membrane1.65E-04
18GO:0030956: glutamyl-tRNA(Gln) amidotransferase complex3.67E-04
19GO:0009515: granal stacked thylakoid3.67E-04
20GO:0009295: nucleoid7.88E-04
21GO:0000427: plastid-encoded plastid RNA polymerase complex8.00E-04
22GO:0000311: plastid large ribosomal subunit1.08E-03
23GO:0010007: magnesium chelatase complex1.29E-03
24GO:0009509: chromoplast1.29E-03
25GO:0009317: acetyl-CoA carboxylase complex1.29E-03
26GO:0030095: chloroplast photosystem II1.38E-03
27GO:0015934: large ribosomal subunit1.52E-03
28GO:0042651: thylakoid membrane2.11E-03
29GO:0022626: cytosolic ribosome2.16E-03
30GO:0015935: small ribosomal subunit2.32E-03
31GO:0009526: plastid envelope2.51E-03
32GO:0031897: Tic complex2.51E-03
33GO:0055035: plastid thylakoid membrane3.21E-03
34GO:0048046: apoplast3.54E-03
35GO:0009533: chloroplast stromal thylakoid5.64E-03
36GO:0010319: stromule6.05E-03
37GO:0030529: intracellular ribonucleoprotein complex6.80E-03
38GO:0009539: photosystem II reaction center7.52E-03
39GO:0005763: mitochondrial small ribosomal subunit8.54E-03
40GO:0009707: chloroplast outer membrane8.88E-03
41GO:0005759: mitochondrial matrix9.68E-03
42GO:0032040: small-subunit processome1.31E-02
43GO:0009532: plastid stroma2.25E-02
44GO:0022625: cytosolic large ribosomal subunit2.66E-02
45GO:0009523: photosystem II3.55E-02
46GO:0005623: cell3.61E-02
47GO:0016592: mediator complex3.90E-02
48GO:0005778: peroxisomal membrane4.45E-02
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Gene type



Gene DE type