co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT3G48140

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0006182: cGMP biosynthetic process	0.00E+00
2	GO:0072722: response to amitrole	0.00E+00
3	GO:0044794: positive regulation by host of viral process	0.00E+00
4	GO:0006616: SRP-dependent cotranslational protein targeting to membrane, translocation	0.00E+00
5	GO:0030149: sphingolipid catabolic process	0.00E+00
6	GO:0006457: protein folding	1.06E-14
7	GO:0034976: response to endoplasmic reticulum stress	2.45E-11
8	GO:0042742: defense response to bacterium	1.98E-07
9	GO:0055074: calcium ion homeostasis	3.63E-06
10	GO:0006468: protein phosphorylation	9.19E-06
11	GO:0045454: cell redox homeostasis	1.74E-05
12	GO:0010150: leaf senescence	2.62E-05
13	GO:0052033: pathogen-associated molecular pattern dependent induction by symbiont of host innate immune response	5.48E-05
14	GO:0030091: protein repair	9.51E-05
15	GO:0030968: endoplasmic reticulum unfolded protein response	1.20E-04
16	GO:0010120: camalexin biosynthetic process	1.20E-04
17	GO:0034975: protein folding in endoplasmic reticulum	1.40E-04
18	GO:0051938: L-glutamate import	1.40E-04
19	GO:1990022: RNA polymerase III complex localization to nucleus	1.40E-04
20	GO:0042964: thioredoxin reduction	1.40E-04
21	GO:0046244: salicylic acid catabolic process	1.40E-04
22	GO:0044376: RNA polymerase II complex import to nucleus	1.40E-04
23	GO:0043266: regulation of potassium ion transport	1.40E-04
24	GO:0043067: regulation of programmed cell death	1.76E-04
25	GO:0043091: L-arginine import	3.20E-04
26	GO:0031204: posttranslational protein targeting to membrane, translocation	3.20E-04
27	GO:0080151: positive regulation of salicylic acid mediated signaling pathway	3.20E-04
28	GO:0044419: interspecies interaction between organisms	3.20E-04
29	GO:0030003: cellular cation homeostasis	3.20E-04
30	GO:0019752: carboxylic acid metabolic process	3.20E-04
31	GO:0033512: L-lysine catabolic process to acetyl-CoA via saccharopine	3.20E-04
32	GO:0046686: response to cadmium ion	3.68E-04
33	GO:0010272: response to silver ion	5.26E-04
34	GO:0006979: response to oxidative stress	5.98E-04
35	GO:0002239: response to oomycetes	7.53E-04
36	GO:0072334: UDP-galactose transmembrane transport	7.53E-04
37	GO:0009620: response to fungus	8.38E-04
38	GO:0009553: embryo sac development	9.04E-04
39	GO:0051365: cellular response to potassium ion starvation	9.98E-04
40	GO:0000302: response to reactive oxygen species	1.20E-03
41	GO:0046283: anthocyanin-containing compound metabolic process	1.26E-03
42	GO:0034052: positive regulation of plant-type hypersensitive response	1.26E-03
43	GO:0000304: response to singlet oxygen	1.26E-03
44	GO:0007264: small GTPase mediated signal transduction	1.27E-03
45	GO:0006561: proline biosynthetic process	1.55E-03
46	GO:0010256: endomembrane system organization	1.55E-03
47	GO:0010555: response to mannitol	1.86E-03
48	GO:0009651: response to salt stress	2.00E-03
49	GO:0006952: defense response	2.03E-03
50	GO:1900056: negative regulation of leaf senescence	2.18E-03
51	GO:0008219: cell death	2.22E-03
52	GO:0009617: response to bacterium	2.32E-03
53	GO:0006499: N-terminal protein myristoylation	2.45E-03
54	GO:0055075: potassium ion homeostasis	2.52E-03
55	GO:0006605: protein targeting	2.52E-03
56	GO:0045087: innate immune response	2.81E-03
57	GO:0010204: defense response signaling pathway, resistance gene-independent	2.88E-03
58	GO:0009699: phenylpropanoid biosynthetic process	2.88E-03
59	GO:0019430: removal of superoxide radicals	2.88E-03
60	GO:0006099: tricarboxylic acid cycle	2.93E-03
61	GO:0010112: regulation of systemic acquired resistance	3.26E-03
62	GO:0015780: nucleotide-sugar transport	3.26E-03
63	GO:0015031: protein transport	3.63E-03
64	GO:0010205: photoinhibition	3.65E-03
65	GO:0030042: actin filament depolymerization	3.65E-03
66	GO:0006032: chitin catabolic process	4.06E-03
67	GO:0000272: polysaccharide catabolic process	4.48E-03
68	GO:0006816: calcium ion transport	4.48E-03
69	GO:0009682: induced systemic resistance	4.48E-03
70	GO:0006790: sulfur compound metabolic process	4.92E-03
71	GO:0018107: peptidyl-threonine phosphorylation	5.37E-03
72	GO:0009718: anthocyanin-containing compound biosynthetic process	5.37E-03
73	GO:0010075: regulation of meristem growth	5.37E-03
74	GO:0009934: regulation of meristem structural organization	5.84E-03
75	GO:0010143: cutin biosynthetic process	5.84E-03
76	GO:0002237: response to molecule of bacterial origin	5.84E-03
77	GO:0048316: seed development	5.92E-03
78	GO:0009626: plant-type hypersensitive response	6.11E-03
79	GO:0046854: phosphatidylinositol phosphorylation	6.32E-03
80	GO:0006071: glycerol metabolic process	6.81E-03
81	GO:0009751: response to salicylic acid	6.81E-03
82	GO:0010025: wax biosynthetic process	6.81E-03
83	GO:0005992: trehalose biosynthetic process	7.32E-03
84	GO:0006874: cellular calcium ion homeostasis	7.84E-03
85	GO:0003333: amino acid transmembrane transport	8.38E-03
86	GO:0016998: cell wall macromolecule catabolic process	8.38E-03
87	GO:0019748: secondary metabolic process	8.92E-03
88	GO:0030433: ubiquitin-dependent ERAD pathway	8.92E-03
89	GO:0010227: floral organ abscission	9.48E-03
90	GO:0009306: protein secretion	1.01E-02
91	GO:0009790: embryo development	1.01E-02
92	GO:0000413: protein peptidyl-prolyl isomerization	1.12E-02
93	GO:0042391: regulation of membrane potential	1.12E-02
94	GO:0010197: polar nucleus fusion	1.18E-02
95	GO:0048868: pollen tube development	1.18E-02
96	GO:0006520: cellular amino acid metabolic process	1.18E-02
97	GO:0007166: cell surface receptor signaling pathway	1.37E-02
98	GO:0002229: defense response to oomycetes	1.37E-02
99	GO:0009555: pollen development	1.44E-02
100	GO:0016032: viral process	1.44E-02
101	GO:0009567: double fertilization forming a zygote and endosperm	1.58E-02
102	GO:0006464: cellular protein modification process	1.58E-02
103	GO:0009615: response to virus	1.79E-02
104	GO:0009607: response to biotic stimulus	1.86E-02
105	GO:0009627: systemic acquired resistance	1.93E-02
106	GO:0016311: dephosphorylation	2.08E-02
107	GO:0016049: cell growth	2.08E-02
108	GO:0009817: defense response to fungus, incompatible interaction	2.16E-02
109	GO:0055114: oxidation-reduction process	2.27E-02
110	GO:0010043: response to zinc ion	2.39E-02
111	GO:0007165: signal transduction	2.81E-02
112	GO:0006631: fatty acid metabolic process	2.88E-02
113	GO:0042542: response to hydrogen peroxide	2.97E-02
114	GO:0051707: response to other organism	3.06E-02
115	GO:0009644: response to high light intensity	3.23E-02
116	GO:0009636: response to toxic substance	3.32E-02
117	GO:0009408: response to heat	3.39E-02
118	GO:0006855: drug transmembrane transport	3.41E-02
119	GO:0031347: regulation of defense response	3.50E-02
120	GO:0016310: phosphorylation	3.56E-02
121	GO:0009846: pollen germination	3.59E-02
122	GO:0042538: hyperosmotic salinity response	3.59E-02
123	GO:0006486: protein glycosylation	3.78E-02
124	GO:0009909: regulation of flower development	4.06E-02
125	GO:0018105: peptidyl-serine phosphorylation	4.95E-02

Rank	GO Term	Adjusted P value
1	GO:0050269: coniferyl-aldehyde dehydrogenase activity	0.00E+00
2	GO:0008117: sphinganine-1-phosphate aldolase activity	0.00E+00
3	GO:0047720: indoleacetaldoxime dehydratase activity	0.00E+00
4	GO:0015165: pyrimidine nucleotide-sugar transmembrane transporter activity	0.00E+00
5	GO:0016312: inositol bisphosphate phosphatase activity	0.00E+00
6	GO:0003756: protein disulfide isomerase activity	1.81E-10
7	GO:0004674: protein serine/threonine kinase activity	1.43E-08
8	GO:0016301: kinase activity	1.88E-07
9	GO:0051082: unfolded protein binding	2.86E-07
10	GO:0005460: UDP-glucose transmembrane transporter activity	8.48E-06
11	GO:0005459: UDP-galactose transmembrane transporter activity	2.60E-05
12	GO:0033743: peptide-methionine (R)-S-oxide reductase activity	5.48E-05
13	GO:0005524: ATP binding	1.30E-04
14	GO:0004149: dihydrolipoyllysine-residue succinyltransferase activity	1.40E-04
15	GO:0031957: very long-chain fatty acid-CoA ligase activity	1.40E-04
16	GO:0048037: cofactor binding	1.40E-04
17	GO:0004776: succinate-CoA ligase (GDP-forming) activity	3.20E-04
18	GO:0004775: succinate-CoA ligase (ADP-forming) activity	3.20E-04
19	GO:0005509: calcium ion binding	5.00E-04
20	GO:0004383: guanylate cyclase activity	5.26E-04
21	GO:0000030: mannosyltransferase activity	5.26E-04
22	GO:0005093: Rab GDP-dissociation inhibitor activity	5.26E-04
23	GO:0004441: inositol-1,4-bisphosphate 1-phosphatase activity	5.26E-04
24	GO:0015189: L-lysine transmembrane transporter activity	7.53E-04
25	GO:0015181: arginine transmembrane transporter activity	7.53E-04
26	GO:0035529: NADH pyrophosphatase activity	7.53E-04
27	GO:0016004: phospholipase activator activity	9.98E-04
28	GO:0005086: ARF guanyl-nucleotide exchange factor activity	9.98E-04
29	GO:0005313: L-glutamate transmembrane transporter activity	9.98E-04
30	GO:0047631: ADP-ribose diphosphatase activity	1.26E-03
31	GO:0000210: NAD+ diphosphatase activity	1.55E-03
32	GO:0004029: aldehyde dehydrogenase (NAD) activity	1.55E-03
33	GO:0051213: dioxygenase activity	1.71E-03
34	GO:0008113: peptide-methionine (S)-S-oxide reductase activity	1.86E-03
35	GO:0008441: 3'(2'),5'-bisphosphate nucleotidase activity	1.86E-03
36	GO:0102391: decanoate--CoA ligase activity	1.86E-03
37	GO:0005261: cation channel activity	1.86E-03
38	GO:0030247: polysaccharide binding	2.01E-03
39	GO:0004467: long-chain fatty acid-CoA ligase activity	2.18E-03
40	GO:0016831: carboxy-lyase activity	2.18E-03
41	GO:0016706: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors	2.81E-03
42	GO:0008889: glycerophosphodiester phosphodiesterase activity	3.26E-03
43	GO:0004028: 3-chloroallyl aldehyde dehydrogenase activity	3.65E-03
44	GO:0015174: basic amino acid transmembrane transporter activity	3.65E-03
45	GO:0004568: chitinase activity	4.06E-03
46	GO:0004129: cytochrome-c oxidase activity	4.48E-03
47	GO:0004672: protein kinase activity	4.67E-03
48	GO:0030246: carbohydrate binding	5.04E-03
49	GO:0005262: calcium channel activity	5.37E-03
50	GO:0005516: calmodulin binding	5.98E-03
51	GO:0004970: ionotropic glutamate receptor activity	6.32E-03
52	GO:0030552: cAMP binding	6.32E-03
53	GO:0030553: cGMP binding	6.32E-03
54	GO:0005217: intracellular ligand-gated ion channel activity	6.32E-03
55	GO:0008061: chitin binding	6.32E-03
56	GO:0003712: transcription cofactor activity	6.32E-03
57	GO:0005216: ion channel activity	7.84E-03
58	GO:0008565: protein transporter activity	1.03E-02
59	GO:0005249: voltage-gated potassium channel activity	1.12E-02
60	GO:0030551: cyclic nucleotide binding	1.12E-02
61	GO:0004791: thioredoxin-disulfide reductase activity	1.25E-02
62	GO:0016853: isomerase activity	1.25E-02
63	GO:0016671: oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor	1.51E-02
64	GO:0004683: calmodulin-dependent protein kinase activity	2.00E-02
65	GO:0008757: S-adenosylmethionine-dependent methyltransferase activity	2.08E-02
66	GO:0015450: P-P-bond-hydrolysis-driven protein transmembrane transporter activity	2.16E-02
67	GO:0005096: GTPase activator activity	2.23E-02
68	GO:0015238: drug transmembrane transporter activity	2.23E-02
69	GO:0008233: peptidase activity	2.26E-02
70	GO:0016614: oxidoreductase activity, acting on CH-OH group of donors	2.39E-02
71	GO:0004712: protein serine/threonine/tyrosine kinase activity	2.72E-02
72	GO:0003755: peptidyl-prolyl cis-trans isomerase activity	3.41E-02
73	GO:0051287: NAD binding	3.50E-02
74	GO:0015171: amino acid transmembrane transporter activity	4.06E-02
75	GO:0080043: quercetin 3-O-glucosyltransferase activity	4.55E-02
76	GO:0080044: quercetin 7-O-glucosyltransferase activity	4.55E-02
77	GO:0003779: actin binding	4.75E-02
78	GO:0015035: protein disulfide oxidoreductase activity	4.95E-02
79	GO:0016746: transferase activity, transferring acyl groups	4.95E-02

Rank	GO Term	Adjusted P value
1	GO:0031205: endoplasmic reticulum Sec complex	0.00E+00
2	GO:0000327: lytic vacuole within protein storage vacuole	0.00E+00
3	GO:0005784: Sec61 translocon complex	0.00E+00
4	GO:0005788: endoplasmic reticulum lumen	5.30E-21
5	GO:0005783: endoplasmic reticulum	6.70E-20
6	GO:0005886: plasma membrane	5.20E-07
7	GO:0045252: oxoglutarate dehydrogenase complex	1.40E-04
8	GO:0005774: vacuolar membrane	1.83E-04
9	GO:0030176: integral component of endoplasmic reticulum membrane	4.07E-04
10	GO:0009898: cytoplasmic side of plasma membrane	9.98E-04
11	GO:0005746: mitochondrial respiratory chain	1.26E-03
12	GO:0016592: mediator complex	1.27E-03
13	GO:0005798: Golgi-associated vesicle	1.55E-03
14	GO:0005773: vacuole	1.83E-03
15	GO:0030173: integral component of Golgi membrane	1.86E-03
16	GO:0000326: protein storage vacuole	2.88E-03
17	GO:0009505: plant-type cell wall	3.54E-03
18	GO:0005789: endoplasmic reticulum membrane	5.01E-03
19	GO:0016021: integral component of membrane	8.30E-03
20	GO:0005623: cell	8.87E-03
21	GO:0015629: actin cytoskeleton	9.48E-03
22	GO:0048046: apoplast	2.24E-02
23	GO:0005576: extracellular region	2.49E-02
24	GO:0005829: cytosol	3.13E-02
25	GO:0009506: plasmodesma	3.67E-02
26	GO:0009507: chloroplast	3.76E-02