Gene type: Transcription factor Metabolic gene Others DE type: Up Down Slightly_up Slightly_down Mixeded Others

GO Enrichment Analysis of Co-expressed Genes with

AT3G48090

GO-BP
GO-MF
GO-CC
RankGO TermAdjusted P value
1GO:0072660: maintenance of protein location in plasma membrane0.00E+00
2GO:0071327: cellular response to trehalose stimulus0.00E+00
3GO:0051245: negative regulation of cellular defense response0.00E+00
4GO:0045792: negative regulation of cell size0.00E+00
5GO:1900367: positive regulation of defense response to insect0.00E+00
6GO:0051553: flavone biosynthetic process0.00E+00
7GO:0006468: protein phosphorylation7.80E-14
8GO:0006952: defense response1.60E-09
9GO:0007166: cell surface receptor signaling pathway5.17E-07
10GO:0009816: defense response to bacterium, incompatible interaction6.02E-07
11GO:0031349: positive regulation of defense response1.74E-06
12GO:0031348: negative regulation of defense response1.84E-06
13GO:0010200: response to chitin3.42E-06
14GO:0043069: negative regulation of programmed cell death9.49E-06
15GO:0042742: defense response to bacterium1.23E-05
16GO:0048194: Golgi vesicle budding1.47E-05
17GO:0006612: protein targeting to membrane1.47E-05
18GO:0060548: negative regulation of cell death2.72E-05
19GO:0010363: regulation of plant-type hypersensitive response2.72E-05
20GO:0080142: regulation of salicylic acid biosynthetic process2.72E-05
21GO:0006887: exocytosis6.14E-05
22GO:0010942: positive regulation of cell death6.48E-05
23GO:0070370: cellular heat acclimation1.20E-04
24GO:0061025: membrane fusion1.32E-04
25GO:2000031: regulation of salicylic acid mediated signaling pathway1.91E-04
26GO:0006643: membrane lipid metabolic process1.91E-04
27GO:1901183: positive regulation of camalexin biosynthetic process1.91E-04
28GO:0060862: negative regulation of floral organ abscission1.91E-04
29GO:0043562: cellular response to nitrogen levels1.91E-04
30GO:0009620: response to fungus1.95E-04
31GO:0050832: defense response to fungus4.23E-04
32GO:0080151: positive regulation of salicylic acid mediated signaling pathway4.29E-04
33GO:0009838: abscission4.29E-04
34GO:0080185: effector dependent induction by symbiont of host immune response4.29E-04
35GO:0010618: aerenchyma formation4.29E-04
36GO:0006452: translational frameshifting4.29E-04
37GO:0006212: uracil catabolic process4.29E-04
38GO:0007584: response to nutrient4.29E-04
39GO:0019483: beta-alanine biosynthetic process4.29E-04
40GO:0045905: positive regulation of translational termination4.29E-04
41GO:0046740: transport of virus in host, cell to cell4.29E-04
42GO:0015914: phospholipid transport4.29E-04
43GO:2000072: regulation of defense response to fungus, incompatible interaction4.29E-04
44GO:0045901: positive regulation of translational elongation4.29E-04
45GO:0000266: mitochondrial fission4.34E-04
46GO:0071365: cellular response to auxin stimulus4.34E-04
47GO:0034605: cellular response to heat5.55E-04
48GO:0010167: response to nitrate6.22E-04
49GO:0048281: inflorescence morphogenesis6.99E-04
50GO:0007188: adenylate cyclase-modulating G-protein coupled receptor signaling pathway6.99E-04
51GO:0055074: calcium ion homeostasis6.99E-04
52GO:1900140: regulation of seedling development6.99E-04
53GO:0072661: protein targeting to plasma membrane6.99E-04
54GO:0009617: response to bacterium7.12E-04
55GO:0009863: salicylic acid mediated signaling pathway7.65E-04
56GO:0048278: vesicle docking9.21E-04
57GO:0010071: root meristem specification9.97E-04
58GO:0070301: cellular response to hydrogen peroxide9.97E-04
59GO:0002239: response to oomycetes9.97E-04
60GO:0072583: clathrin-dependent endocytosis9.97E-04
61GO:0010148: transpiration9.97E-04
62GO:0071323: cellular response to chitin9.97E-04
63GO:2000022: regulation of jasmonic acid mediated signaling pathway1.00E-03
64GO:0010508: positive regulation of autophagy1.32E-03
65GO:0010107: potassium ion import1.32E-03
66GO:0009626: plant-type hypersensitive response1.38E-03
67GO:0044550: secondary metabolite biosynthetic process1.65E-03
68GO:0010225: response to UV-C1.68E-03
69GO:0009697: salicylic acid biosynthetic process1.68E-03
70GO:0030041: actin filament polymerization1.68E-03
71GO:0046283: anthocyanin-containing compound metabolic process1.68E-03
72GO:0031365: N-terminal protein amino acid modification1.68E-03
73GO:0006623: protein targeting to vacuole1.71E-03
74GO:0006886: intracellular protein transport2.00E-03
75GO:1900425: negative regulation of defense response to bacterium2.07E-03
76GO:0006904: vesicle docking involved in exocytosis2.34E-03
77GO:0010310: regulation of hydrogen peroxide metabolic process2.49E-03
78GO:2000067: regulation of root morphogenesis2.49E-03
79GO:0000911: cytokinesis by cell plate formation2.49E-03
80GO:0009612: response to mechanical stimulus2.49E-03
81GO:0010555: response to mannitol2.49E-03
82GO:0010161: red light signaling pathway2.93E-03
83GO:0009627: systemic acquired resistance2.93E-03
84GO:0046470: phosphatidylcholine metabolic process2.93E-03
85GO:0071446: cellular response to salicylic acid stimulus2.93E-03
86GO:0006906: vesicle fusion2.93E-03
87GO:0010044: response to aluminum ion2.93E-03
88GO:0016559: peroxisome fission3.40E-03
89GO:0009787: regulation of abscisic acid-activated signaling pathway3.40E-03
90GO:0018401: peptidyl-proline hydroxylation to 4-hydroxy-L-proline3.40E-03
91GO:0030162: regulation of proteolysis3.40E-03
92GO:1900150: regulation of defense response to fungus3.40E-03
93GO:0010078: maintenance of root meristem identity3.40E-03
94GO:0010492: maintenance of shoot apical meristem identity3.40E-03
95GO:0006102: isocitrate metabolic process3.40E-03
96GO:0009817: defense response to fungus, incompatible interaction3.42E-03
97GO:0008219: cell death3.42E-03
98GO:0006075: (1->3)-beta-D-glucan biosynthetic process3.88E-03
99GO:0007186: G-protein coupled receptor signaling pathway3.88E-03
100GO:0006367: transcription initiation from RNA polymerase II promoter3.88E-03
101GO:0010120: camalexin biosynthetic process3.88E-03
102GO:0010204: defense response signaling pathway, resistance gene-independent3.88E-03
103GO:0010119: regulation of stomatal movement3.95E-03
104GO:0009867: jasmonic acid mediated signaling pathway4.33E-03
105GO:0045087: innate immune response4.33E-03
106GO:0010112: regulation of systemic acquired resistance4.40E-03
107GO:1900426: positive regulation of defense response to bacterium4.93E-03
108GO:0009862: systemic acquired resistance, salicylic acid mediated signaling pathway4.93E-03
109GO:0006896: Golgi to vacuole transport5.48E-03
110GO:0006032: chitin catabolic process5.48E-03
111GO:0051707: response to other organism5.57E-03
112GO:0009750: response to fructose6.06E-03
113GO:0030148: sphingolipid biosynthetic process6.06E-03
114GO:0009737: response to abscisic acid6.26E-03
115GO:0012501: programmed cell death6.66E-03
116GO:0002213: defense response to insect6.66E-03
117GO:0015706: nitrate transport6.66E-03
118GO:0010105: negative regulation of ethylene-activated signaling pathway6.66E-03
119GO:0031347: regulation of defense response6.74E-03
120GO:0006807: nitrogen compound metabolic process7.28E-03
121GO:0007169: transmembrane receptor protein tyrosine kinase signaling pathway7.70E-03
122GO:0016192: vesicle-mediated transport7.87E-03
123GO:0002237: response to molecule of bacterial origin7.91E-03
124GO:0007034: vacuolar transport7.91E-03
125GO:0010053: root epidermal cell differentiation8.57E-03
126GO:0042343: indole glucosinolate metabolic process8.57E-03
127GO:0070588: calcium ion transmembrane transport8.57E-03
128GO:0006874: cellular calcium ion homeostasis1.07E-02
129GO:0010073: meristem maintenance1.07E-02
130GO:0098542: defense response to other organism1.14E-02
131GO:0016998: cell wall macromolecule catabolic process1.14E-02
132GO:0009751: response to salicylic acid1.19E-02
133GO:0009814: defense response, incompatible interaction1.21E-02
134GO:0007005: mitochondrion organization1.21E-02
135GO:0071456: cellular response to hypoxia1.21E-02
136GO:0071215: cellular response to abscisic acid stimulus1.29E-02
137GO:0009625: response to insect1.29E-02
138GO:0010089: xylem development1.37E-02
139GO:0010118: stomatal movement1.53E-02
140GO:0042631: cellular response to water deprivation1.53E-02
141GO:0042391: regulation of membrane potential1.53E-02
142GO:0080022: primary root development1.53E-02
143GO:0008360: regulation of cell shape1.62E-02
144GO:0010197: polar nucleus fusion1.62E-02
145GO:0006413: translational initiation1.73E-02
146GO:0010183: pollen tube guidance1.79E-02
147GO:0009749: response to glucose1.79E-02
148GO:0010150: leaf senescence1.86E-02
149GO:0002229: defense response to oomycetes1.88E-02
150GO:0000302: response to reactive oxygen species1.88E-02
151GO:0006891: intra-Golgi vesicle-mediated transport1.88E-02
152GO:0030163: protein catabolic process2.06E-02
153GO:0043161: proteasome-mediated ubiquitin-dependent protein catabolic process2.08E-02
154GO:0001666: response to hypoxia2.44E-02
155GO:0009607: response to biotic stimulus2.54E-02
156GO:0015031: protein transport2.60E-02
157GO:0042128: nitrate assimilation2.64E-02
158GO:0035556: intracellular signal transduction2.68E-02
159GO:0048573: photoperiodism, flowering2.74E-02
160GO:0009409: response to cold2.85E-02
161GO:0009813: flavonoid biosynthetic process3.05E-02
162GO:0006970: response to osmotic stress3.09E-02
163GO:0006499: N-terminal protein myristoylation3.16E-02
164GO:0006508: proteolysis3.53E-02
165GO:0006099: tricarboxylic acid cycle3.60E-02
166GO:0046777: protein autophosphorylation3.81E-02
167GO:0009744: response to sucrose4.18E-02
168GO:0009965: leaf morphogenesis4.54E-02
169GO:0042787: protein ubiquitination involved in ubiquitin-dependent protein catabolic process4.78E-02
170GO:0007275: multicellular organism development4.88E-02
RankGO TermAdjusted P value
1GO:0033759: flavone synthase activity0.00E+00
2GO:0003837: beta-ureidopropionase activity0.00E+00
3GO:0016301: kinase activity1.18E-09
4GO:0005524: ATP binding2.10E-09
5GO:0004674: protein serine/threonine kinase activity5.13E-09
6GO:0004012: phospholipid-translocating ATPase activity1.02E-06
7GO:0005516: calmodulin binding3.89E-06
8GO:0004713: protein tyrosine kinase activity9.49E-06
9GO:0015662: ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism1.94E-05
10GO:0004675: transmembrane receptor protein serine/threonine kinase activity6.04E-05
11GO:0004714: transmembrane receptor protein tyrosine kinase activity1.53E-04
12GO:0032050: clathrin heavy chain binding1.91E-04
13GO:1901149: salicylic acid binding1.91E-04
14GO:0004672: protein kinase activity2.33E-04
15GO:0005515: protein binding3.14E-04
16GO:0045140: inositol phosphoceramide synthase activity4.29E-04
17GO:0016706: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors5.21E-04
18GO:0004190: aspartic-type endopeptidase activity6.22E-04
19GO:0001664: G-protein coupled receptor binding6.99E-04
20GO:0031683: G-protein beta/gamma-subunit complex binding6.99E-04
21GO:0003955: NAD(P)H dehydrogenase (quinone) activity6.99E-04
22GO:0005484: SNAP receptor activity7.18E-04
23GO:0033612: receptor serine/threonine kinase binding9.21E-04
24GO:0004449: isocitrate dehydrogenase (NAD+) activity9.97E-04
25GO:0016655: oxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor1.32E-03
26GO:0043495: protein anchor1.32E-03
27GO:0005546: phosphatidylinositol-4,5-bisphosphate binding1.68E-03
28GO:0016709: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, NAD(P)H as one donor, and incorporation of one atom of oxygen2.14E-03
29GO:0004656: procollagen-proline 4-dioxygenase activity2.49E-03
30GO:0008235: metalloexopeptidase activity2.93E-03
31GO:0043022: ribosome binding3.40E-03
32GO:0003843: 1,3-beta-D-glucan synthase activity3.88E-03
33GO:0004630: phospholipase D activity3.88E-03
34GO:0005267: potassium channel activity3.88E-03
35GO:0070290: N-acylphosphatidylethanolamine-specific phospholipase D activity3.88E-03
36GO:0005509: calcium ion binding4.49E-03
37GO:0004712: protein serine/threonine/tyrosine kinase activity4.72E-03
38GO:0000149: SNARE binding4.72E-03
39GO:0015112: nitrate transmembrane transporter activity4.93E-03
40GO:0005506: iron ion binding5.03E-03
41GO:0004568: chitinase activity5.48E-03
42GO:0000287: magnesium ion binding5.48E-03
43GO:0004177: aminopeptidase activity6.06E-03
44GO:0005262: calcium channel activity7.28E-03
45GO:0005388: calcium-transporting ATPase activity7.28E-03
46GO:0031072: heat shock protein binding7.28E-03
47GO:0031625: ubiquitin protein ligase binding8.31E-03
48GO:0030552: cAMP binding8.57E-03
49GO:0030553: cGMP binding8.57E-03
50GO:0008061: chitin binding8.57E-03
51GO:0005217: intracellular ligand-gated ion channel activity8.57E-03
52GO:0003712: transcription cofactor activity8.57E-03
53GO:0004970: ionotropic glutamate receptor activity8.57E-03
54GO:0042803: protein homodimerization activity9.85E-03
55GO:0031418: L-ascorbic acid binding9.94E-03
56GO:0003954: NADH dehydrogenase activity9.94E-03
57GO:0005216: ion channel activity1.07E-02
58GO:0019825: oxygen binding1.07E-02
59GO:0051082: unfolded protein binding1.07E-02
60GO:0030551: cyclic nucleotide binding1.53E-02
61GO:0005249: voltage-gated potassium channel activity1.53E-02
62GO:0010181: FMN binding1.70E-02
63GO:0003743: translation initiation factor activity2.17E-02
64GO:0016722: oxidoreductase activity, oxidizing metal ions2.25E-02
65GO:0051213: dioxygenase activity2.44E-02
66GO:0009931: calcium-dependent protein serine/threonine kinase activity2.64E-02
67GO:0004806: triglyceride lipase activity2.74E-02
68GO:0030247: polysaccharide binding2.74E-02
69GO:0004721: phosphoprotein phosphatase activity2.74E-02
70GO:0004683: calmodulin-dependent protein kinase activity2.74E-02
71GO:0004222: metalloendopeptidase activity3.16E-02
72GO:0003746: translation elongation factor activity3.49E-02
73GO:0020037: heme binding3.56E-02
74GO:0004871: signal transducer activity4.45E-02
75GO:0005198: structural molecule activity4.54E-02
RankGO TermAdjusted P value
1GO:0005674: transcription factor TFIIF complex0.00E+00
2GO:0005886: plasma membrane5.69E-16
3GO:0016021: integral component of membrane1.12E-09
4GO:0070062: extracellular exosome1.47E-05
5GO:0009504: cell plate1.46E-04
6GO:0005911: cell-cell junction1.91E-04
7GO:0017119: Golgi transport complex3.27E-04
8GO:0031304: intrinsic component of mitochondrial inner membrane4.29E-04
9GO:0005802: trans-Golgi network8.91E-04
10GO:0000145: exocyst1.95E-03
11GO:0005789: endoplasmic reticulum membrane3.26E-03
12GO:0019005: SCF ubiquitin ligase complex3.42E-03
13GO:0009506: plasmodesma3.49E-03
14GO:0000148: 1,3-beta-D-glucan synthase complex3.88E-03
15GO:0005887: integral component of plasma membrane4.17E-03
16GO:0030665: clathrin-coated vesicle membrane4.93E-03
17GO:0031201: SNARE complex5.13E-03
18GO:0031902: late endosome membrane5.13E-03
19GO:0030125: clathrin vesicle coat5.48E-03
20GO:0031012: extracellular matrix7.28E-03
21GO:0005795: Golgi stack8.57E-03
22GO:0005741: mitochondrial outer membrane1.14E-02
23GO:0030136: clathrin-coated vesicle1.45E-02
24GO:0019898: extrinsic component of membrane1.79E-02
25GO:0005778: peroxisomal membrane2.25E-02
26GO:0016020: membrane2.44E-02
27GO:0005788: endoplasmic reticulum lumen2.54E-02
28GO:0000139: Golgi membrane2.85E-02
29GO:0000151: ubiquitin ligase complex2.95E-02
30GO:0005794: Golgi apparatus3.87E-02
31GO:0090406: pollen tube4.18E-02
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Gene type



Gene DE type