co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT3G47070

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0006399: tRNA metabolic process	0.00E+00
2	GO:0061635: regulation of protein complex stability	0.00E+00
3	GO:0005996: monosaccharide metabolic process	0.00E+00
4	GO:0016553: base conversion or substitution editing	0.00E+00
5	GO:0015979: photosynthesis	7.97E-20
6	GO:0009773: photosynthetic electron transport in photosystem I	4.53E-10
7	GO:0032544: plastid translation	1.74E-06
8	GO:0018298: protein-chromophore linkage	1.14E-05
9	GO:0010207: photosystem II assembly	1.17E-05
10	GO:0019464: glycine decarboxylation via glycine cleavage system	1.59E-05
11	GO:0006546: glycine catabolic process	1.59E-05
12	GO:0009409: response to cold	5.02E-05
13	GO:0006810: transport	6.45E-05
14	GO:0010196: nonphotochemical quenching	7.34E-05
15	GO:1904966: positive regulation of vitamin E biosynthetic process	1.40E-04
16	GO:1904964: positive regulation of phytol biosynthetic process	1.40E-04
17	GO:0071588: hydrogen peroxide mediated signaling pathway	1.40E-04
18	GO:0043489: RNA stabilization	1.40E-04
19	GO:0010206: photosystem II repair	1.47E-04
20	GO:0015995: chlorophyll biosynthetic process	1.86E-04
21	GO:0019684: photosynthesis, light reaction	2.44E-04
22	GO:0030388: fructose 1,6-bisphosphate metabolic process	3.20E-04
23	GO:1902326: positive regulation of chlorophyll biosynthetic process	3.20E-04
24	GO:0009767: photosynthetic electron transport chain	3.21E-04
25	GO:0006000: fructose metabolic process	5.26E-04
26	GO:0090391: granum assembly	5.26E-04
27	GO:0009658: chloroplast organization	5.42E-04
28	GO:0009768: photosynthesis, light harvesting in photosystem I	5.53E-04
29	GO:0009735: response to cytokinin	5.94E-04
30	GO:2001141: regulation of RNA biosynthetic process	7.53E-04
31	GO:0071484: cellular response to light intensity	7.53E-04
32	GO:0043433: negative regulation of sequence-specific DNA binding transcription factor activity	7.53E-04
33	GO:0000413: protein peptidyl-prolyl isomerization	9.10E-04
34	GO:0010037: response to carbon dioxide	9.98E-04
35	GO:0015976: carbon utilization	9.98E-04
36	GO:0009765: photosynthesis, light harvesting	9.98E-04
37	GO:0045727: positive regulation of translation	9.98E-04
38	GO:0015994: chlorophyll metabolic process	9.98E-04
39	GO:2000122: negative regulation of stomatal complex development	9.98E-04
40	GO:0010190: cytochrome b6f complex assembly	1.55E-03
41	GO:0010027: thylakoid membrane organization	1.71E-03
42	GO:0009854: oxidative photosynthetic carbon pathway	1.86E-03
43	GO:0010019: chloroplast-nucleus signaling pathway	1.86E-03
44	GO:0010555: response to mannitol	1.86E-03
45	GO:0009772: photosynthetic electron transport in photosystem II	2.18E-03
46	GO:0009645: response to low light intensity stimulus	2.18E-03
47	GO:0042742: defense response to bacterium	2.38E-03
48	GO:0009642: response to light intensity	2.52E-03
49	GO:0009850: auxin metabolic process	2.52E-03
50	GO:0009631: cold acclimation	2.56E-03
51	GO:0009637: response to blue light	2.81E-03
52	GO:0009853: photorespiration	2.81E-03
53	GO:0017004: cytochrome complex assembly	2.88E-03
54	GO:0006002: fructose 6-phosphate metabolic process	2.88E-03
55	GO:0071482: cellular response to light stimulus	2.88E-03
56	GO:0009051: pentose-phosphate shunt, oxidative branch	3.26E-03
57	GO:0042254: ribosome biogenesis	3.30E-03
58	GO:0010114: response to red light	3.61E-03
59	GO:0009644: response to high light intensity	3.90E-03
60	GO:0006352: DNA-templated transcription, initiation	4.48E-03
61	GO:0000272: polysaccharide catabolic process	4.48E-03
62	GO:0018119: peptidyl-cysteine S-nitrosylation	4.48E-03
63	GO:0009089: lysine biosynthetic process via diaminopimelate	4.48E-03
64	GO:0006412: translation	5.22E-03
65	GO:0045454: cell redox homeostasis	5.31E-03
66	GO:0010628: positive regulation of gene expression	5.37E-03
67	GO:0006006: glucose metabolic process	5.37E-03
68	GO:0006094: gluconeogenesis	5.37E-03
69	GO:0005986: sucrose biosynthetic process	5.37E-03
70	GO:0010020: chloroplast fission	5.84E-03
71	GO:0019253: reductive pentose-phosphate cycle	5.84E-03
72	GO:0010167: response to nitrate	6.32E-03
73	GO:0006636: unsaturated fatty acid biosynthetic process	6.81E-03
74	GO:0019344: cysteine biosynthetic process	7.32E-03
75	GO:0000027: ribosomal large subunit assembly	7.32E-03
76	GO:0048511: rhythmic process	8.38E-03
77	GO:0061077: chaperone-mediated protein folding	8.38E-03
78	GO:0016226: iron-sulfur cluster assembly	8.92E-03
79	GO:0055114: oxidation-reduction process	1.05E-02
80	GO:0042631: cellular response to water deprivation	1.12E-02
81	GO:0007623: circadian rhythm	1.19E-02
82	GO:0015986: ATP synthesis coupled proton transport	1.25E-02
83	GO:0042752: regulation of circadian rhythm	1.25E-02
84	GO:0019252: starch biosynthetic process	1.31E-02
85	GO:0000302: response to reactive oxygen species	1.37E-02
86	GO:0042128: nitrate assimilation	1.93E-02
87	GO:0055085: transmembrane transport	1.94E-02
88	GO:0006457: protein folding	1.99E-02
89	GO:0010218: response to far red light	2.31E-02
90	GO:0010119: regulation of stomatal movement	2.39E-02
91	GO:0016051: carbohydrate biosynthetic process	2.55E-02
92	GO:0045087: innate immune response	2.55E-02
93	GO:0034599: cellular response to oxidative stress	2.63E-02
94	GO:0032259: methylation	3.25E-02
95	GO:0006364: rRNA processing	3.78E-02
96	GO:0006396: RNA processing	4.95E-02

Rank	GO Term	Adjusted P value
1	GO:0050421: nitrite reductase (NO-forming) activity	0.00E+00
2	GO:0051738: xanthophyll binding	0.00E+00
3	GO:0047889: ferredoxin-nitrate reductase activity	0.00E+00
4	GO:0033728: divinyl chlorophyllide a 8-vinyl-reductase activity	0.00E+00
5	GO:0051744: 3,8-divinyl protochlorophyllide a 8-vinyl reductase activity	0.00E+00
6	GO:0008887: glycerate kinase activity	0.00E+00
7	GO:0048307: ferredoxin-nitrite reductase activity	0.00E+00
8	GO:0050278: sedoheptulose-bisphosphatase activity	0.00E+00
9	GO:0019843: rRNA binding	2.12E-08
10	GO:0003755: peptidyl-prolyl cis-trans isomerase activity	5.88E-08
11	GO:0016168: chlorophyll binding	1.86E-07
12	GO:0005528: FK506 binding	3.57E-07
13	GO:0004375: glycine dehydrogenase (decarboxylating) activity	8.48E-06
14	GO:0005509: calcium ion binding	1.43E-05
15	GO:0022891: substrate-specific transmembrane transporter activity	3.77E-05
16	GO:0051920: peroxiredoxin activity	5.48E-05
17	GO:0045156: electron transporter, transferring electrons within the cyclic electron transport pathway of photosynthesis activity	5.48E-05
18	GO:0016209: antioxidant activity	9.51E-05
19	GO:0052638: indole-3-butyrate beta-glucosyltransferase activity	1.40E-04
20	GO:0047746: chlorophyllase activity	3.20E-04
21	GO:0042389: omega-3 fatty acid desaturase activity	3.20E-04
22	GO:0010297: heteropolysaccharide binding	3.20E-04
23	GO:0004047: aminomethyltransferase activity	3.20E-04
24	GO:0042132: fructose 1,6-bisphosphate 1-phosphatase activity	3.20E-04
25	GO:0008967: phosphoglycolate phosphatase activity	3.20E-04
26	GO:0008839: 4-hydroxy-tetrahydrodipicolinate reductase	3.20E-04
27	GO:0031409: pigment binding	4.54E-04
28	GO:0051537: 2 iron, 2 sulfur cluster binding	4.58E-04
29	GO:0010277: chlorophyllide a oxygenase [overall] activity	5.26E-04
30	GO:0003735: structural constituent of ribosome	6.41E-04
31	GO:0016851: magnesium chelatase activity	7.53E-04
32	GO:0004659: prenyltransferase activity	9.98E-04
33	GO:0001053: plastid sigma factor activity	9.98E-04
34	GO:0004345: glucose-6-phosphate dehydrogenase activity	9.98E-04
35	GO:0016987: sigma factor activity	9.98E-04
36	GO:0043495: protein anchor	9.98E-04
37	GO:0016688: L-ascorbate peroxidase activity	1.55E-03
38	GO:0004130: cytochrome-c peroxidase activity	1.55E-03
39	GO:0042578: phosphoric ester hydrolase activity	1.55E-03
40	GO:0019899: enzyme binding	2.18E-03
41	GO:0004033: aldo-keto reductase (NADP) activity	2.52E-03
42	GO:0016717: oxidoreductase activity, acting on paired donors, with oxidation of a pair of donors resulting in the reduction of molecular oxygen to two molecules of water	2.88E-03
43	GO:0008794: arsenate reductase (glutaredoxin) activity	4.48E-03
44	GO:0004089: carbonate dehydratase activity	5.37E-03
45	GO:0031072: heat shock protein binding	5.37E-03
46	GO:0008266: poly(U) RNA binding	5.84E-03
47	GO:0051536: iron-sulfur cluster binding	7.32E-03
48	GO:0009055: electron carrier activity	7.58E-03
49	GO:0003756: protein disulfide isomerase activity	1.01E-02
50	GO:0046933: proton-transporting ATP synthase activity, rotational mechanism	1.18E-02
51	GO:0050662: coenzyme binding	1.25E-02
52	GO:0048038: quinone binding	1.37E-02
53	GO:0042802: identical protein binding	1.52E-02
54	GO:0008483: transaminase activity	1.64E-02
55	GO:0046872: metal ion binding	1.71E-02
56	GO:0008168: methyltransferase activity	1.78E-02
57	GO:0004601: peroxidase activity	1.85E-02
58	GO:0000982: transcription factor activity, RNA polymerase II core promoter proximal region sequence-specific binding	2.08E-02
59	GO:0004222: metalloendopeptidase activity	2.31E-02
60	GO:0016614: oxidoreductase activity, acting on CH-OH group of donors	2.39E-02
61	GO:0000987: core promoter proximal region sequence-specific DNA binding	2.63E-02
62	GO:0050661: NADP binding	2.80E-02
63	GO:0051539: 4 iron, 4 sulfur cluster binding	2.80E-02
64	GO:0005198: structural molecule activity	3.32E-02
65	GO:0003899: DNA-directed 5'-3' RNA polymerase activity	3.78E-02
66	GO:0003690: double-stranded DNA binding	3.87E-02
67	GO:0003824: catalytic activity	3.90E-02
68	GO:0080043: quercetin 3-O-glucosyltransferase activity	4.55E-02
69	GO:0080044: quercetin 7-O-glucosyltransferase activity	4.55E-02
70	GO:0051082: unfolded protein binding	4.85E-02
71	GO:0015035: protein disulfide oxidoreductase activity	4.95E-02

Rank	GO Term	Adjusted P value
1	GO:0009344: nitrite reductase complex [NAD(P)H]	0.00E+00
2	GO:0009575: chromoplast stroma	0.00E+00
3	GO:0009507: chloroplast	3.68E-62
4	GO:0009535: chloroplast thylakoid membrane	7.37E-43
5	GO:0009534: chloroplast thylakoid	6.93E-32
6	GO:0009543: chloroplast thylakoid lumen	1.14E-29
7	GO:0009579: thylakoid	2.19E-25
8	GO:0009941: chloroplast envelope	1.45E-24
9	GO:0009570: chloroplast stroma	1.99E-21
10	GO:0009654: photosystem II oxygen evolving complex	2.36E-15
11	GO:0031977: thylakoid lumen	2.56E-15
12	GO:0019898: extrinsic component of membrane	7.79E-14
13	GO:0030095: chloroplast photosystem II	1.07E-11
14	GO:0010598: NAD(P)H dehydrogenase complex (plastoquinone)	1.89E-08
15	GO:0009706: chloroplast inner membrane	2.86E-07
16	GO:0010287: plastoglobule	4.89E-07
17	GO:0009523: photosystem II	2.46E-06
18	GO:0005960: glycine cleavage complex	8.48E-06
19	GO:0005840: ribosome	2.19E-05
20	GO:0042651: thylakoid membrane	2.41E-05
21	GO:0010319: stromule	1.25E-04
22	GO:0009515: granal stacked thylakoid	1.40E-04
23	GO:0009782: photosystem I antenna complex	1.40E-04
24	GO:0042170: plastid membrane	3.20E-04
25	GO:0000427: plastid-encoded plastid RNA polymerase complex	3.20E-04
26	GO:0030076: light-harvesting complex	4.07E-04
27	GO:0010007: magnesium chelatase complex	5.26E-04
28	GO:0009517: PSII associated light-harvesting complex II	9.98E-04
29	GO:0045261: proton-transporting ATP synthase complex, catalytic core F(1)	1.55E-03
30	GO:0009533: chloroplast stromal thylakoid	2.18E-03
31	GO:0048046: apoplast	2.39E-03
32	GO:0009538: photosystem I reaction center	2.52E-03
33	GO:0016020: membrane	5.63E-03
34	GO:0016021: integral component of membrane	8.30E-03
35	GO:0015935: small ribosomal subunit	8.38E-03
36	GO:0009532: plastid stroma	8.38E-03
37	GO:0009522: photosystem I	1.25E-02
38	GO:0022626: cytosolic ribosome	1.36E-02
39	GO:0030529: intracellular ribonucleoprotein complex	1.79E-02
40	GO:0015934: large ribosomal subunit	2.39E-02
41	GO:0009536: plastid	4.47E-02